mRNA_E-fasciculatus_F_contig16260.4262.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16260.4262.1
Unique NamemRNA_E-fasciculatus_F_contig16260.4262.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16260.4262.1 vs. uniprot
Match: A0A6H5KDX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX6_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.940e-41
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 1 
Query:  388 SDLFHPRPETVELSATEKREMRKWGLDVDVVAWPDGFIPPPWVKAVGNTTNKWANREMALTAAREEQEFVEKLRAFSPS 624
            SDLFHPRPETV LSATEKREMRKWGLDVD VAW DGF+PPPWVKAVG+TTNKWANREMA+TAAREEQEFVEKLRA SPS
Sbjct:   28 SDLFHPRPETVVLSATEKREMRKWGLDVDAVAWSDGFVPPPWVKAVGSTTNKWANREMAITAAREEQEFVEKLRALSPS 106
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BLAST of mRNA_E-fasciculatus_F_contig16260.4262.1 vs. uniprot
Match: D7G5L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L9_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 3.050e-40
Identity = 82/125 (65.60%), Postives = 85/125 (68.00%), Query Frame = 1 
Query:  325 MRKEAARDQASALLRRPKDPLSDLFHPRPETVELSATEKREMRKWGLDVDVVAWPDGFIPPPWVK-------------------------AVGNTTNKWANREMALTAAREEQEFVEKLRAFSPS 624
            MRKEAARDQ            SDLFHPRPETV LSATEKREMRKWGL+VD VAWPDGF+PPPWVK                         AVGNTTNKWANREMA+TAAREEQEFVEKLRA SPS
Sbjct:    1 MRKEAARDQ------------SDLFHPRPETVVLSATEKREMRKWGLEVDAVAWPDGFVPPPWVKLCSSSVEGTLRTAPRLLRDLSPCLQAVGNTTNKWANREMAITAAREEQEFVEKLRALSPS 113
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16260.4262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDX6_9PHAE1.940e-4191.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5L9_ECTSI3.050e-4065.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16260contigE-fasciculatus_F_contig16260:182..2678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size624
Cds size624
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16260.4262.1prot_E-fasciculatus_F_contig16260.4262.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16260 182..2678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928094.5014074-CDS-E-fasciculatus_F_contig16260:181..2861622928094.5014074-CDS-E-fasciculatus_F_contig16260:181..286Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16260 182..286 -
1695995818.8981748-CDS-E-fasciculatus_F_contig16260:181..2861695995818.8981748-CDS-E-fasciculatus_F_contig16260:181..286Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16260 182..286 -
1622928094.5248973-CDS-E-fasciculatus_F_contig16260:859..9911622928094.5248973-CDS-E-fasciculatus_F_contig16260:859..991Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16260 860..991 -
1695995818.9125407-CDS-E-fasciculatus_F_contig16260:859..9911695995818.9125407-CDS-E-fasciculatus_F_contig16260:859..991Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16260 860..991 -
1622928094.5399892-CDS-E-fasciculatus_F_contig16260:1368..15781622928094.5399892-CDS-E-fasciculatus_F_contig16260:1368..1578Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16260 1369..1578 -
1695995818.9250062-CDS-E-fasciculatus_F_contig16260:1368..15781695995818.9250062-CDS-E-fasciculatus_F_contig16260:1368..1578Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16260 1369..1578 -
1622928095.0291579-CDS-E-fasciculatus_F_contig16260:2186..22351622928095.0291579-CDS-E-fasciculatus_F_contig16260:2186..2235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16260 2187..2235 -
1695995818.934472-CDS-E-fasciculatus_F_contig16260:2186..22351695995818.934472-CDS-E-fasciculatus_F_contig16260:2186..2235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16260 2187..2235 -
1622928095.6895278-CDS-E-fasciculatus_F_contig16260:2550..26781622928095.6895278-CDS-E-fasciculatus_F_contig16260:2550..2678Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16260 2551..2678 -
1695995818.9426482-CDS-E-fasciculatus_F_contig16260:2550..26781695995818.9426482-CDS-E-fasciculatus_F_contig16260:2550..2678Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16260 2551..2678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16260.4262.1

>prot_E-fasciculatus_F_contig16260.4262.1 ID=prot_E-fasciculatus_F_contig16260.4262.1|Name=mRNA_E-fasciculatus_F_contig16260.4262.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=208bp
ISKADEEQREQEQQPRRRAKQRRTTRDGLDIFAVTFFDGDKPKRTDWLAK
DAKSEAEFQPKGGRTMSKSRSEPCLGTFKRARRRQDEPRPTKIRPFRTLF
PVPAKGIDMRKEAARDQASALLRRPKDPLSDLFHPRPETVELSATEKREM
RKWGLDVDVVAWPDGFIPPPWVKAVGNTTNKWANREMALTAAREEQEFVE
KLRAFSPS
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mRNA from alignment at E-fasciculatus_F_contig16260:182..2678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16260.4262.1 ID=mRNA_E-fasciculatus_F_contig16260.4262.1|Name=mRNA_E-fasciculatus_F_contig16260.4262.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2497bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16260:182..2678- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTCCAAGGCCGACGAGGAGCAACGAGAACAAGAGCAGCAACCGCGGCG
AAGGGCAAAACAACGAAGGACGACTCGGGACGGATTGGACATATTCGCAG
TGACATTCTTCGACGGCGATAAGCCCAAGTGAGACAAACAGTCGTGTATG
AGTTGTTTCGAAACGCGTAACTTGTCGTCCAAGACATGCTACTTGGTACG
TGAAGAATCTCTGGCAATGAAGCAACAACGGGCGTGGAAACTGGTGCACA
GTTTTCATGTTTTGCTATCTGTCCGGTGGAAGGCCTCTTTTCGATAGATA
CGCATCTGTGTTGAGTACACGACACGGCTGTGTAAGTACACGAACGTTGA
TACAAAAGTTGATACCAGAACTAGTAGCGTTTGTCGAGATGCTGAACGCT
AGTTCATGCTATTTATTTCATGTACGCCAATTGAATCCAACAGGAGGACC
GACTGGCTTGCGAAGGATGCCAAGAGCGAAGCGGAATTCCAGGTGAGGGC
CCATGACACCAGAAGCAACAAGGTGCCGCGCACAGCAGCCCTGTGTGCGC
GTGTGTATGAGCATGTTGCTTCATAAATCTTCGGCGGTGCTCTCCGGCTG
CTGGCCCCAATGACAAAGAAAATGTCAGCGTTTCGCGTGTGTATGTGTTT
GTAGGATATTTTGATGCTCCACTTTGAAACATGGACGCTCATCCTGGTTC
GTGGCCCCGGATCGGCACTTGATGCGGCACACATGATAACACGCTGGACT
TCAGCCGGCGGGCGATCGCAGGGAGCTAAGTTTAACCACTCATTTTGATG
GCCGTGGGCAGGAGCTTCACCTACGCTCATTCTTAAACTCGATGAATTTC
TCAACGCCGTCCGAGTGTAGTGCGTTGTCGCGAGGTACCTGGTTGCTGCT
GCCAACACTGATTGATTTTCATCCGTTTGCGTTGATGATGGGACTTGCCA
ACCCGGAAACTCCGGAACCAAACGGTGAAATACACTCCTCCCGCGGGCTC
CCGCTACAACAATGTAGCAGTCGAACAGCCTCACACGTCGCCGGACTCGT
GTACGACCTCTCGTTGGACTGCCCCCAAAACGATTATCATGTCCGGATAG
CCGAAAGGTGGGAGAACGATGTCGAAATCGCGGTCGGAGCCTTGCCTCGG
CACCTTCAAGCGGGCGCGGAGACGACAAGACGAGCCTCGCCCGACGAAAA
TCAGACCGTTCCGGACCCTGTTCCCCGTTCCGGCGAAGGGAATAGACATG
AGGAAAGAGGCTGCTCGAGATCAGGCAAGCGCGCTTTTGCGGAGGCCGAA
AGACCCTTTGGTGTGATTCCTTAGGACACACGCGCGAGAGAGAGTGCCCC
AGGATGTCTTGGAGGGGGGTCTGGATGCCTTCATGGATGCGTTTTTCATG
CAGTTACAGAAACTCATGGAGCAGGGTCTCGACGCCTTCATGGATGCGGT
TTTCATGTACTGCAAGAAGTCTTGGAGGCCCTAGGGGTGTCTCGATGCCT
TCGAGGATGAGTTTTTTCATGCACTACCAACTGTGAAGAGACAAACGGAG
CGATAGGACAAACGAGCACTAGACACGAAAGCCACCCACCCTGAGACAAG
CACACCGTTTGCTGGCTGGCGCACGCGCGACATCCACTCGACCCCATCAC
GTCCTTGTCGTGCGAATCATCCCGCAACCCCACGTAGAGTGACCTGTTCC
ATCCAAGGCCGGAAACGGTGGAGCTGTCGGCTACCGAGAAACGAGAGATG
CGGAAGTGGGGCCTCGACGTGGACGTCGTGGCTTGGCCAGACGGATTCAT
TCCACCCCCCTGGGTCAAGGTACACTAGTGGCTACGGTTTGAGAGGGGGT
CGGGACAATAATCTCCTTGACCCGCTTTTCTATTAAAGTCGCACTGTGTA
GTATTTTTCATATTCGGGACAAGCCAAAGACACTCCGGTTTTGTCTTGGA
TGATCTCTCTTACACCGTAGCCGCTACTGTAAAAATACAAGACTGAATCC
GCGAGGCATTGGAGTTGAGCAGACCCTTGTTCACGGCGGCAAGGCTTCTT
GGGAAGGGGGTGTCAATCAGGCTAGGTTTGTGGTGCGCCTAACCACACTC
GAGTGGGGGCGCATCCAAGGCTGTGGAAGAGAGAAGAAGGCGATTCCACA
TCACCGCCACACCAGAACACTTTTCCTAAGTTCTGATAAACAGCTGCAAG
GTGCCTCGCTACCTTTAGCACATTCGAACGTCCTGATGGTGGTGCAATGT
ACCTTGCGACTCTTAGCACAAGCAAATGCTCTAAAGAGGGGATGCAAGCT
ACGGCTGCGACCTTTTAGCGCAACGGAATGCTCGGATGCTCCGTACAAGG
GACCTTGCGAATTTCCCCCGTTTCTTTTATCCTTGTCTCCAGGCCGTCGG
GAACACGACGAACAAGTGGGCTAACAGGGAAATGGCGCTAACTGCAGCGA
GGGAGGAGCAGGAGTTCGTCGAAAAATTACGGGCGTTTTCACCATCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16260:182..2678-

>mRNA_E-fasciculatus_F_contig16260.4262.1 ID=mRNA_E-fasciculatus_F_contig16260.4262.1|Name=mRNA_E-fasciculatus_F_contig16260.4262.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1248bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16260:182..2678- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTCCAAGGCCGACGAGGAGCAACGAGAACAAGAGCAGCAACCGCGGCG
AAGGGCAAAACAACGAAGGACGACTCGGGACGGATTGGACATATTCGCAG
TGACATTCTTCGACGGCGATAAGCCCAAATCTCCAAGGCCGACGAGGAGC
AACGAGAACAAGAGCAGCAACCGCGGCGAAGGGCAAAACAACGAAGGACG
ACTCGGGACGGATTGGACATATTCGCAGTGACATTCTTCGACGGCGATAA
GCCCAAGAGGACCGACTGGCTTGCGAAGGATGCCAAGAGCGAAGCGGAAT
TCCAGGAGGACCGACTGGCTTGCGAAGGATGCCAAGAGCGAAGCGGAATT
CCAGCCGAAAGGTGGGAGAACGATGTCGAAATCGCGGTCGGAGCCTTGCC
TCGGCACCTTCAAGCGGGCGCGGAGACGACAAGACGAGCCTCGCCCGACG
AAAATCAGACCGTTCCGGACCCTGTTCCCCGTTCCGGCGAAGGGAATAGA
CATGAGGAAAGAGGCTGCTCGAGATCAGGCAAGCGCGCTTTTGCGGAGGC
CGAAAGACCCTTTGCCGAAAGGTGGGAGAACGATGTCGAAATCGCGGTCG
GAGCCTTGCCTCGGCACCTTCAAGCGGGCGCGGAGACGACAAGACGAGCC
TCGCCCGACGAAAATCAGACCGTTCCGGACCCTGTTCCCCGTTCCGGCGA
AGGGAATAGACATGAGGAAAGAGGCTGCTCGAGATCAGGCAAGCGCGCTT
TTGCGGAGGCCGAAAGACCCTTTGAGTGACCTGTTCCATCCAAGGCCGGA
AACGGTGGAGCTGTCGGCTACCGAGAAACGAGAGATGCGGAAGTGGGGCC
TCGACGTGGACGTCGTGGCTTGGCCAGACGGATTCATTCCACCCCCCTGG
GTCAAGAGTGACCTGTTCCATCCAAGGCCGGAAACGGTGGAGCTGTCGGC
TACCGAGAAACGAGAGATGCGGAAGTGGGGCCTCGACGTGGACGTCGTGG
CTTGGCCAGACGGATTCATTCCACCCCCCTGGGTCAAGGCCGTCGGGAAC
ACGACGAACAAGTGGGCTAACAGGGAAATGGCGCTAACTGCAGCGAGGGA
GGAGCAGGAGTTCGTCGAAAAATTACGGGCGTTTTCACCATCCGCCGTCG
GGAACACGACGAACAAGTGGGCTAACAGGGAAATGGCGCTAACTGCAGCG
AGGGAGGAGCAGGAGTTCGTCGAAAAATTACGGGCGTTTTCACCATCC
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