mRNA_E-fasciculatus_F_contig1626.4261.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1626.4261.1
Unique NamemRNA_E-fasciculatus_F_contig1626.4261.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1626.4261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1626contigE-fasciculatus_F_contig1626:13042..13632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1626.4261.1prot_E-fasciculatus_F_contig1626.4261.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1626 13110..13607 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928094.102395-UTR-E-fasciculatus_F_contig1626:13041..131091622928094.102395-UTR-E-fasciculatus_F_contig1626:13041..13109Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1626 13042..13109 +
1695995818.6733172-UTR-E-fasciculatus_F_contig1626:13041..131091695995818.6733172-UTR-E-fasciculatus_F_contig1626:13041..13109Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1626 13042..13109 +
1622928094.156268-UTR-E-fasciculatus_F_contig1626:13607..136321622928094.156268-UTR-E-fasciculatus_F_contig1626:13607..13632Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1626 13608..13632 +
1695995818.7039266-UTR-E-fasciculatus_F_contig1626:13607..136321695995818.7039266-UTR-E-fasciculatus_F_contig1626:13607..13632Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1626 13608..13632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928094.1171832-CDS-E-fasciculatus_F_contig1626:13109..136071622928094.1171832-CDS-E-fasciculatus_F_contig1626:13109..13607Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1626 13110..13607 +
1695995818.6911066-CDS-E-fasciculatus_F_contig1626:13109..136071695995818.6911066-CDS-E-fasciculatus_F_contig1626:13109..13607Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1626 13110..13607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1626.4261.1

>prot_E-fasciculatus_F_contig1626.4261.1 ID=prot_E-fasciculatus_F_contig1626.4261.1|Name=mRNA_E-fasciculatus_F_contig1626.4261.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=166bp
MSKQSTQATDSEVMQIHLLEIHNGILSFFRAVASTTKIIRRLHQSHVRTD
RTASIHACVFVCMLRESSQFDFNIRIYILRLWAHQPGLYVGRMPPTTSFF
QPSLHRAFVSLKSTDASTHESMKKTSKTQITDHRQSINPKPNRSTTRTSP
PVCRRAPLNAPATKR*
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mRNA from alignment at E-fasciculatus_F_contig1626:13042..13632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1626.4261.1 ID=mRNA_E-fasciculatus_F_contig1626.4261.1|Name=mRNA_E-fasciculatus_F_contig1626.4261.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=591bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1626:13042..13632+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGAAATATTGTTGCACCCAAATCGCCAAGCAACATCATGTCTGCGAGCG
CATCAACCTGATGAGGATATGTCAAAACAAAGCACACAAGCTACAGACAG
CGAGGTGATGCAAATCCACCTTCTTGAAATTCACAACGGGATTCTTTCCT
TTTTTCGTGCCGTCGCTTCAACCACAAAAATTATTAGGCGGCTGCATCAA
TCCCACGTACGTACTGACCGTACCGCATCGATTCACGCCTGTGTATTTGT
GTGCATGCTGCGTGAGTCGTCTCAATTTGATTTTAACATCCGTATCTACA
TCTTACGGCTCTGGGCGCATCAGCCGGGCTTATACGTAGGAAGAATGCCA
CCAACAACTTCGTTTTTTCAACCGTCGTTACACCGTGCTTTCGTCAGTTT
GAAAAGTACAGATGCATCGACCCATGAGTCCATGAAAAAGACCAGCAAGA
CGCAGATCACCGATCATCGTCAATCGATCAACCCAAAACCAAACCGTTCG
ACTACCAGAACGAGTCCACCCGTGTGTCGGCGCGCACCGCTGAATGCCCC
AGCGACGAAGAGGTAGCCGGATCGGCGGTCGTGGCTAAGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1626:13042..13632+

>mRNA_E-fasciculatus_F_contig1626.4261.1 ID=mRNA_E-fasciculatus_F_contig1626.4261.1|Name=mRNA_E-fasciculatus_F_contig1626.4261.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1626:13042..13632+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCAAAACAAAGCACACAAGCTACAGACAGCGAGGTGATGCAAATCCA
CCTTCTTGAAATTCACAACGGGATTCTTTCCTTTTTTCGTGCCGTCGCTT
CAACCACAAAAATTATTAGGCGGCTGCATCAATCCCACGTACGTACTGAC
CGTACCGCATCGATTCACGCCTGTGTATTTGTGTGCATGCTGCGTGAGTC
GTCTCAATTTGATTTTAACATCCGTATCTACATCTTACGGCTCTGGGCGC
ATCAGCCGGGCTTATACGTAGGAAGAATGCCACCAACAACTTCGTTTTTT
CAACCGTCGTTACACCGTGCTTTCGTCAGTTTGAAAAGTACAGATGCATC
GACCCATGAGTCCATGAAAAAGACCAGCAAGACGCAGATCACCGATCATC
GTCAATCGATCAACCCAAAACCAAACCGTTCGACTACCAGAACGAGTCCA
CCCGTGTGTCGGCGCGCACCGCTGAATGCCCCAGCGACGAAGAGGTAGAT
GTCAAAACAAAGCACACAAGCTACAGACAGCGAGGTGATGCAAATCCACC
TTCTTGAAATTCACAACGGGATTCTTTCCTTTTTTCGTGCCGTCGCTTCA
ACCACAAAAATTATTAGGCGGCTGCATCAATCCCACGTACGTACTGACCG
TACCGCATCGATTCACGCCTGTGTATTTGTGTGCATGCTGCGTGAGTCGT
CTCAATTTGATTTTAACATCCGTATCTACATCTTACGGCTCTGGGCGCAT
CAGCCGGGCTTATACGTAGGAAGAATGCCACCAACAACTTCGTTTTTTCA
ACCGTCGTTACACCGTGCTTTCGTCAGTTTGAAAAGTACAGATGCATCGA
CCCATGAGTCCATGAAAAAGACCAGCAAGACGCAGATCACCGATCATCGT
CAATCGATCAACCCAAAACCAAACCGTTCGACTACCAGAACGAGTCCACC
CGTGTGTCGGCGCGCACCGCTGAATGCCCCAGCGACGAAGAGGTAG
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