mRNA_E-fasciculatus_F_contig16259.4258.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16259.4258.1
Unique NamemRNA_E-fasciculatus_F_contig16259.4258.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16259.4258.1 vs. uniprot
Match: D7G2C3_ECTSI (Putative Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C3_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.020e-29
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 RCLEIFYEAYDTLEMSTYSNVAAWRERVEARPATAKGLIINSGAQDGAFKEYHSA 165
            RCLEIFYEAYDTLEMSTYSNVAAWRERVEARPATAKGLIINSGAQ+GAFKEYHSA
Sbjct:  236 RCLEIFYEAYDTLEMSTYSNVAAWRERVEARPATAKGLIINSGAQNGAFKEYHSA 290
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BLAST of mRNA_E-fasciculatus_F_contig16259.4258.1 vs. uniprot
Match: A0A835ZJ35_9STRA (Putative glutathione S-transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ35_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.550e-8
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 RCLEIFYEAYDTLEMSTYSNVAAWRERVEARPATAKGLIINSGAQDGA-FKEYHSA 165
            +CL +FY+  + L +S Y  V  W+E + +RPA AKG+ INS A++   +KEYHS+
Sbjct:  235 QCLSVFYKGDEPLGLSEYQEVMRWKENLLSRPAIAKGMRINSPAEENQQYKEYHSS 290
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BLAST of mRNA_E-fasciculatus_F_contig16259.4258.1 vs. uniprot
Match: A0A7W6H161_9RHOB (GST-like protein n=1 Tax=Sulfitobacter undariae TaxID=1563671 RepID=A0A7W6H161_9RHOB)

HSP 1 Score: 48.1 bits (113), Expect = 6.070e-5
Identity = 19/47 (40.43%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   19 YEAYDTLEMSTYSNVAAWRERVEARPATAKGLIINSGAQDGAFKEYH 159
            Y A + L++++Y NV  W E ++ARPA A+GL++N    D   K+ H
Sbjct:  225 YSAAEFLDVASYKNVLRWAETIDARPAVARGLMVNRAFGDDPSKQLH 271
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BLAST of mRNA_E-fasciculatus_F_contig16259.4258.1 vs. uniprot
Match: UPI001CBEC2DD (glutathione-dependent disulfide-bond oxidoreductase n=1 Tax=Tateyamaria pelophila TaxID=328415 RepID=UPI001CBEC2DD)

HSP 1 Score: 47.8 bits (112), Expect = 8.340e-5
Identity = 21/56 (37.50%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    4 CLEIFYEAYDTLEMSTYSNVAAWRERVEARPATAKGLIINSGAQDGAFK--EYHSA 165
            CL   Y A + L++ +Y+NV AW ++++ARPAT +G ++N  + D + +  E H+A
Sbjct:  220 CLGRLYSAAEFLDVESYTNVMAWAKKIDARPATLRGRMVNRVSGDPSLQLHERHAA 275
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16259.4258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2C3_ECTSI1.020e-2998.18Putative Glutathione S-transferase n=1 Tax=Ectocar... [more]
A0A835ZJ35_9STRA5.550e-844.64Putative glutathione S-transferase n=1 Tax=Tribone... [more]
A0A7W6H161_9RHOB6.070e-540.43GST-like protein n=1 Tax=Sulfitobacter undariae Ta... [more]
UPI001CBEC2DD8.340e-537.50glutathione-dependent disulfide-bond oxidoreductas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16259contigE-fasciculatus_F_contig16259:823..990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928094.0112975-CDS-E-fasciculatus_F_contig16259:822..9901622928094.0112975-CDS-E-fasciculatus_F_contig16259:822..990Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16259 823..990 +
1695995818.6569855-CDS-E-fasciculatus_F_contig16259:822..9901695995818.6569855-CDS-E-fasciculatus_F_contig16259:822..990Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16259 823..990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16259.4258.1prot_E-fasciculatus_F_contig16259.4258.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16259 823..990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16259.4258.1

>prot_E-fasciculatus_F_contig16259.4258.1 ID=prot_E-fasciculatus_F_contig16259.4258.1|Name=mRNA_E-fasciculatus_F_contig16259.4258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=56bp
RCLEIFYEAYDTLEMSTYSNVAAWRERVEARPATAKGLIINSGAQDGAFK
EYHSA*
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mRNA from alignment at E-fasciculatus_F_contig16259:823..990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16259.4258.1 ID=mRNA_E-fasciculatus_F_contig16259.4258.1|Name=mRNA_E-fasciculatus_F_contig16259.4258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=168bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16259:823..990+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTGCTTGGAGATTTTCTATGAGGCCTACGACACGCTGGAGATGTCGAC
CTACTCGAACGTGGCGGCTTGGCGCGAGCGGGTGGAGGCACGACCGGCAA
CAGCCAAGGGGTTGATCATCAACTCCGGCGCGCAGGACGGGGCCTTCAAG
GAATACCACTCCGCCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16259:823..990+

>mRNA_E-fasciculatus_F_contig16259.4258.1 ID=mRNA_E-fasciculatus_F_contig16259.4258.1|Name=mRNA_E-fasciculatus_F_contig16259.4258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16259:823..990+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTGCTTGGAGATTTTCTATGAGGCCTACGACACGCTGGAGATGTCGAC
CTACTCGAACGTGGCGGCTTGGCGCGAGCGGGTGGAGGCACGACCGGCAA
CAGCCAAGGGGTTGATCATCAACTCCGGCGCGCAGGACGGGGCCTTCAAG
GAATACCACTCCGCCTAAAGGTGCTTGGAGATTTTCTATGAGGCCTACGA
CACGCTGGAGATGTCGACCTACTCGAACGTGGCGGCTTGGCGCGAGCGGG
TGGAGGCACGACCGGCAACAGCCAAGGGGTTGATCATCAACTCCGGCGCG
CAGGACGGGGCCTTCAAGGAATACCACTCCGCCTAA
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