mRNA_E-fasciculatus_F_contig16258.4257.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16258.4257.1
Unique NamemRNA_E-fasciculatus_F_contig16258.4257.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16258.4257.1 vs. uniprot
Match: D8LCK1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK1_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 1.460e-81
Identity = 176/184 (95.65%), Postives = 178/184 (96.74%), Query Frame = 1 
Query:    1 QTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPQGHPDIAESLESLGNVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQGRRPEAATLRARAVAILEEAAAAAPADGTTTAPP 552
            +TALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLP GHPDIAESLESLGNVAI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQGRRPEAA+LRARAVAILEEAAAA P  GTTTA P
Sbjct:  120 KTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEAAAAVPGGGTTTAAP 303
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BLAST of mRNA_E-fasciculatus_F_contig16258.4257.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 4.160e-66
Identity = 157/170 (92.35%), Postives = 159/170 (93.53%), Query Frame = 1 
Query:    1 QTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPQGHPDIAESLESLGNVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQGRRPEAATLRARAVAILEEA 510
            +TALADALDSTI GD WFERGELKEARYEHLRALRIRSARLP GHPDIAESLESLGNVAI      XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKL EAEAVCAHAMSIVEV DSQGHNTPHLMAALLKLQSKILKRQGRRPEAA+LRARAVAILEEA
Sbjct: 1565 KTALADALDSTIRGDQWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIREGNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLSEAEAVCAHAMSIVEVKDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEA 1734
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16258.4257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCK1_ECTSI1.460e-8195.65Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5JQC7_9PHAE4.160e-6692.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16258contigE-fasciculatus_F_contig16258:620..2630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.4
Seed ortholog evalue2.1e-65
Seed eggNOG ortholog2880.D8LCK1
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size552
Cds size552
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16258.4257.1prot_E-fasciculatus_F_contig16258.4257.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16258 620..2630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928093.9158914-CDS-E-fasciculatus_F_contig16258:619..8051622928093.9158914-CDS-E-fasciculatus_F_contig16258:619..805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16258 620..805 +
1695995818.6045315-CDS-E-fasciculatus_F_contig16258:619..8051695995818.6045315-CDS-E-fasciculatus_F_contig16258:619..805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16258 620..805 +
1622928093.9267452-CDS-E-fasciculatus_F_contig16258:1495..16251622928093.9267452-CDS-E-fasciculatus_F_contig16258:1495..1625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16258 1496..1625 +
1695995818.6214056-CDS-E-fasciculatus_F_contig16258:1495..16251695995818.6214056-CDS-E-fasciculatus_F_contig16258:1495..1625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16258 1496..1625 +
1622928093.9406881-CDS-E-fasciculatus_F_contig16258:1975..21101622928093.9406881-CDS-E-fasciculatus_F_contig16258:1975..2110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16258 1976..2110 +
1695995818.6344197-CDS-E-fasciculatus_F_contig16258:1975..21101695995818.6344197-CDS-E-fasciculatus_F_contig16258:1975..2110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16258 1976..2110 +
1622928093.9527526-CDS-E-fasciculatus_F_contig16258:2529..26301622928093.9527526-CDS-E-fasciculatus_F_contig16258:2529..2630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16258 2530..2630 +
1695995818.6445153-CDS-E-fasciculatus_F_contig16258:2529..26301695995818.6445153-CDS-E-fasciculatus_F_contig16258:2529..2630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16258 2530..2630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16258.4257.1

>prot_E-fasciculatus_F_contig16258.4257.1 ID=prot_E-fasciculatus_F_contig16258.4257.1|Name=mRNA_E-fasciculatus_F_contig16258.4257.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=184bp
QTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPQGHPDIAE
SLESLGNVAIREGNHMEAEGLHRRALDMRTRALGPNHMDVAATLNNLAVS
LKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQ
GRRPEAATLRARAVAILEEAAAAAPADGTTTAPP
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mRNA from alignment at E-fasciculatus_F_contig16258:620..2630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16258.4257.1 ID=mRNA_E-fasciculatus_F_contig16258.4257.1|Name=mRNA_E-fasciculatus_F_contig16258.4257.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2011bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16258:620..2630+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGACCGCACTGGCAGACGCTCTGGACAGCACCATCCTCGGAGACCTGTG
GTTCGAGCGCGGAGAGCTGAAGGAGGCGAGGTACGAGCACCTGCGCGCTC
TGAGGATAAGGTCGGCTAGGCTTCCGCAGGGCCACCCGGACATCGCCGAG
AGCCTGGAGAGCCTGGGGAACGTGGCCATTCGCGAGGTGGGGTTTTGGCC
TCGTTGCTGCTGCTGCTGCTGATGCTGATGCTGCGGTCGATGCCGTCTAT
TCCGTCTACCACTATTGCTGTTGCAGTTGGTGTTGATGCTGTGGCTGTTT
TTGTTTTTTCTGCTGTTGCTGTTGTTGCTGCCTACTCCGTCTACCGCTGT
TGCTGTTGCTGTCGCAGCTGTCGCTGCCGCTGTGCAACAACGTTCGGTGA
TTCTATCAAGTAAAACTTTCGGCAATGTAATGTGTCCCTTCATTTTCATC
GCCAACCGTACCTGTACAGATGGAACTTGATGGACAGCAGTAAGAACGTT
TGGCTTCAAAGTAGCAGTGTTTGTTTCCTCTTGTGCCTCGCTTGCTCCGG
CGCCAGCAACTTCACCCCCCTTTCAAACACCCACCAAACCAAGGTGGAAT
CCATGCCGTTCGCGACAAGGGCAAGGTGTCGAAGACCAAGAAAAAAAATA
AAAAATAAATAAATAAAAAAATGATGTTGAATTCCCTACTTCAAAAACAA
TGAAATATATGAAAGTAAATGCTCCCCGAGTAAATGCTCCCCGATGTCCC
CGCCCTTGCTTTTGTATCCCTCCGACGTGGTAGTTCAAGGTGGTTTGTAC
AAATTGACAACCCAGGCATGATAACCCACACCACCGCCACTGCTGTTGAC
GTTTTTTTTTTCCGTTTTTTTTGCAGGGGAACCACATGGAGGCGGAAGGG
CTCCACAGGAGGGCGCTGGACATGCGCACGAGGGCCCTCGGGCCCAACCA
CATGGACGTCGCGGCCACCCTGAACAACCTGGCCGTGTCTCTCAAGGGGC
AGGCTGGTGTGTCTGTCTGTCTCTCTGTCTGTCTGTCTGTCTCTCTGTCT
CTCTGTCTGTTGTTTTTGTTTTTTTGTATTGTTGTCGATGGTAACGTCGC
TGCAGTTGCATTTTTTTTTTTGAACCTTACGCAATGATAACAAGCGTGTG
TGTACGTCAGACGTCGAGAGACCCGTTTCTAAGGTATCGTCTCCGTCTCC
TGACCAGCGCGTGGGCAACAAGGTCATGTGGCGTCGGCAAGCAACGATTT
ATTTTCCCCCGTTTCCCATGCCATTTTGATTCAAGGCTCCCTCCTTTCTC
CCCCGCCGCCGCCCCCGCCCCCGCTACCCTTGTTGCAACCTTTTGGCTAA
CCGTAGGCAAGCTTCCCGAGGCCGAGGCGGTTTGCGCGCACGCGATGTCG
ATCGTGGAGGTCAACGACTCGCAGGGGCACAACACCCCGCACCTCATGGC
GGCGCTGCTGAAGCTCCAGAGCAAGATCCTCAAGCGCCAAGGTGAATGAG
TACCTGTTGTAGCGTTATCACGATGCTCCGCTATGGCTGCCTCCGTCCCC
AGTGCCAAAACCGATTGAGGCACGATACGCGTTGTGCTGCCGTTGTTTAT
CCTTGCATCAGCGCCAAAAAGAGGCAGAACCTAGTTAGAATGAAAATCCT
TGTTGCCTGGGGGACCTAACGCCTCTCCCTCTCTCTCCCCCTCTCTCTGT
TTTGGCGGCATCCTGATCCCAATCGCGGTCTTTGTTGTTCCTTCCGTGCT
AACCCCAACGCCCCCTCTCTCTCCGGGCATGCTGCTCTCCATCGCGCGCT
CCTGCCCGTCTGTCTGTTTGTCTGTCTCTCCCACCCCCCCTCTCTCTCCC
TCTCTTCGCTCCCGCTCTCTCTCCATCTCCCTTTCTCTCTCCCTTTCTCT
CCCTTCCCAGGAAGAAGGCCGGAAGCGGCGACCCTAAGAGCCCGGGCAGT
GGCCATCCTCGAGGAGGCCGCCGCGGCAGCCCCTGCAGACGGTACCACCA
CCGCGCCGCCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16258:620..2630+

>mRNA_E-fasciculatus_F_contig16258.4257.1 ID=mRNA_E-fasciculatus_F_contig16258.4257.1|Name=mRNA_E-fasciculatus_F_contig16258.4257.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16258:620..2630+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGACCGCACTGGCAGACGCTCTGGACAGCACCATCCTCGGAGACCTGTG
GTTCGAGCGCGGAGAGCTGAAGGAGGCGAGGTACGAGCACCTGCGCGCTC
TGAGGATAAGGTCGGCTAGGCTTCCGCAGGGCCACCCGGACATCGCCGAG
AGCCTGGAGAGCCTGGGGAACGTGGCCATTCGCGAGCAGACCGCACTGGC
AGACGCTCTGGACAGCACCATCCTCGGAGACCTGTGGTTCGAGCGCGGAG
AGCTGAAGGAGGCGAGGTACGAGCACCTGCGCGCTCTGAGGATAAGGTCG
GCTAGGCTTCCGCAGGGCCACCCGGACATCGCCGAGAGCCTGGAGAGCCT
GGGGAACGTGGCCATTCGCGAGGGGAACCACATGGAGGCGGAAGGGCTCC
ACAGGAGGGCGCTGGACATGCGCACGAGGGCCCTCGGGCCCAACCACATG
GACGTCGCGGCCACCCTGAACAACCTGGCCGTGTCTCTCAAGGGGCAGGC
TGGGGAACCACATGGAGGCGGAAGGGCTCCACAGGAGGGCGCTGGACATG
CGCACGAGGGCCCTCGGGCCCAACCACATGGACGTCGCGGCCACCCTGAA
CAACCTGGCCGTGTCTCTCAAGGGGCAGGCTGGCAAGCTTCCCGAGGCCG
AGGCGGTTTGCGCGCACGCGATGTCGATCGTGGAGGTCAACGACTCGCAG
GGGCACAACACCCCGCACCTCATGGCGGCGCTGCTGAAGCTCCAGAGCAA
GATCCTCAAGCGCCAAGGCAAGCTTCCCGAGGCCGAGGCGGTTTGCGCGC
ACGCGATGTCGATCGTGGAGGTCAACGACTCGCAGGGGCACAACACCCCG
CACCTCATGGCGGCGCTGCTGAAGCTCCAGAGCAAGATCCTCAAGCGCCA
AGGAAGAAGGCCGGAAGCGGCGACCCTAAGAGCCCGGGCAGTGGCCATCC
TCGAGGAGGCCGCCGCGGCAGCCCCTGCAGACGGTACCACCACCGCGCCG
CCGGAAGAAGGCCGGAAGCGGCGACCCTAAGAGCCCGGGCAGTGGCCATC
CTCGAGGAGGCCGCCGCGGCAGCCCCTGCAGACGGTACCACCACCGCGCC
GCCG
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