mRNA_E-fasciculatus_F_contig16256.4256.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16256.4256.1
Unique NamemRNA_E-fasciculatus_F_contig16256.4256.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Match: D7G000_ECTSI (Coiled-coil flagellar protein, move backward only 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G000_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 1.110e-109
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 1
Query:    1 MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR 564
            MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQ EALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNN LKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLE+NNASMHYR
Sbjct:  288 MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQGEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNRLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLEANNASMHYR 475          
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Match: A0A7S3XQY0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQY0_HETAK)

HSP 1 Score: 239 bits (609), Expect = 9.240e-73
Identity = 131/188 (69.68%), Postives = 154/188 (81.91%), Query Frame = 1
Query:    1 MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR 564
            +RQ+VD+ +ARFL QE  E  KR  L  L+E+V+ LE E+ QWG EE++Q KL+ +L  QR+IK  EA+RAQ AE+DT +QVK+K+L I DL+KRCND NN LKEFSALYDVVKNERNKYVNLIQAS+QALAEMKEKIKIL NEVDILRNES AKDKAL+KE+ AH+ASQAQRDGLRLE N A   YR
Sbjct:   47 LRQEVDVAIARFLRQEGLEREKRDGLDLLVEQVEALEGEIAQWGAEERKQAKLLHVLSAQREIKAREAMRAQAAERDTREQVKVKELAILDLTKRCNDVNNRLKEFSALYDVVKNERNKYVNLIQASNQALAEMKEKIKILQNEVDILRNESAAKDKALQKEKSAHQASQAQRDGLRLELNKAQTEYR 234          
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Match: A0A7S1U464_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U464_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.970e-60
Identity = 115/185 (62.16%), Postives = 150/185 (81.08%), Query Frame = 1
Query:   10 DVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR 564
            +VDI +ARFL QE  E +KRS+L AL+EEVDGLE  + +W  EE++Q K++++L  QR+++  EALRA+ +EKDT +QV++K+LVI DL+K+CN+ NN LKEFSALYDVVKNERNKYVNLIQ+S+QA AEM+EKI+IL NEVDIL  ES AKD+AL+KE  A +A+Q QRD LRL++N A   YR
Sbjct:  386 EVDILIARFLQQESIEQNKRSELDALVEEVDGLEETLAKWHAEERKQNKILSVLSAQRELRSREALRAKASEKDTREQVRIKELVILDLTKKCNEVNNRLKEFSALYDVVKNERNKYVNLIQSSNQAQAEMREKIRILQNEVDILLAESGAKDRALQKEHAARQAAQTQRDALRLDTNKAQAEYR 570          
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Match: A0A1V9Z3F5_9STRA (MBO2, coiled coil flagellar protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3F5_9STRA)

HSP 1 Score: 204 bits (519), Expect = 8.810e-58
Identity = 113/188 (60.11%), Postives = 144/188 (76.60%), Query Frame = 1
Query:    1 MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR 564
            ++QDVD+ +AR    +  E +K ++L AL + V   EAE+ QW  EE +Q+K++ALL  QR++K   A  A   EK T Q++KMK+LVI D +K+CN+TNN LKEFSALYD+VKNERNKYVNLIQAS QALAEMKEKIKILHNEV++LRNESLAKDKAL KER+AH+ +Q  RD LRL++N +   YR
Sbjct:  387 LKQDVDVLIARLFKLDTVEKAKVAELQALAQRVTDYEAELTQWVAEEVKQQKIIALLSAQREMKARAASTAVDNEKATQQELKMKELVILDFAKKCNETNNRLKEFSALYDIVKNERNKYVNLIQASSQALAEMKEKIKILHNEVEVLRNESLAKDKALTKERLAHQTAQCSRDSLRLDTNKSHELYR 574          
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Match: A0A8K1C4E7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4E7_PYTOL)

HSP 1 Score: 203 bits (517), Expect = 2.130e-57
Identity = 113/188 (60.11%), Postives = 143/188 (76.06%), Query Frame = 1
Query:    1 MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR 564
            ++Q +D+ +ARFL  E +E  +  +L  + + V  LE EV QW +EE + +KLVA+L  QR++K  EA  A +AEK T Q++KMK+LVI DL+K+ N+TNN LKEFSALYDVVKNERNKYVNLIQA+ QALAEMKEKIKIL NEV++LRNES+AKDKAL KER+AH  +Q  RD LRLE+N     YR
Sbjct:  431 VKQQIDVLIARFLKHEDSEKEQNEELETMAQNVTSLEEEVAQWIQEEAKHKKLVAMLTAQRELKAREAASALEAEKQTQQELKMKELVIFDLAKKWNETNNHLKEFSALYDVVKNERNKYVNLIQAASQALAEMKEKIKILQNEVEVLRNESIAKDKALGKERLAHTTAQCSRDSLRLETNKCHDQYR 618          
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Match: A0A5D6Y4G9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4G9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 3.590e-57
Identity = 117/188 (62.23%), Postives = 144/188 (76.60%), Query Frame = 1
Query:    1 MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR 564
            ++Q VD+ +ARFL QE  E  +  +L AL   V  LEAEV QW  E  +Q KLVA+L  QR++K  EA  A ++E+ T Q++KMK+LVI DL+K+ N+TNN LKEFSALYDVVKNERNKYVNLIQAS QALAEMKEKIKILHNEV++LRNESLAKDKAL KE++AH  +Q  RD LRL++N +   YR
Sbjct:  406 VKQQVDLLIARFLRQEDGEKRQSGELDALASTVAALEAEVAQWLLEAGKQTKLVAMLTAQREMKAREAAAALESERQTQQELKMKELVIFDLAKKWNETNNHLKEFSALYDVVKNERNKYVNLIQASSQALAEMKEKIKILHNEVEVLRNESLAKDKALGKEKLAHGTAQCSRDSLRLDTNKSHEQYR 593          
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Match: A0A329SVV3_9STRA (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=A0A329SVV3_9STRA)

HSP 1 Score: 202 bits (513), Expect = 7.770e-57
Identity = 115/188 (61.17%), Postives = 147/188 (78.19%), Query Frame = 1
Query:    1 MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR 564
            ++Q VD+ +ARFL QE  EN++ ++L AL  +V GLEAEV QW  EE +Q+KLV +L  QR++K  EA  A  +E+ T Q++K K+LVI DL+K+ N+T N L+EFSALYDVVKNERNKYVNLIQAS QALAEMKEKIKIL+NEV++LRNESLAKDKAL KE++AH  +Q  RD LRL++N +   YR
Sbjct:  437 VKQQVDLLIARFLKQEDGENAQSAELEALSAQVAGLEAEVAQWLVEEGKQKKLVTMLTAQRELKAREAASALNSERQTQQELKTKELVIFDLAKKWNETTNHLREFSALYDVVKNERNKYVNLIQASTQALAEMKEKIKILNNEVEVLRNESLAKDKALVKEKLAHSTAQCSRDSLRLDTNKSHDAYR 624          
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Match: A0A3R7J844_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J844_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.550e-56
Identity = 114/188 (60.64%), Postives = 144/188 (76.60%), Query Frame = 1
Query:    1 MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR 564
            +++ VD+ +ARFL QE  E ++ +DL  L  +V  LEAEV QW  EE +Q+KLV +L  QR++K  EA  A  AE+ T Q++K K+LVI DL+K+ N+T N L+EFSALYDVVKNERNKYVNLIQAS QALAEMKEKIKILHNEV++LRNESLAKDKAL KE++AH  +Q  RD LRL++N +   YR
Sbjct:  446 VKEQVDLLIARFLKQEDGEKAQSADLDVLSTQVSELEAEVAQWLVEENKQKKLVTMLTAQRELKAREATSALTAERQTQQELKTKELVIFDLAKKWNETTNHLREFSALYDVVKNERNKYVNLIQASTQALAEMKEKIKILHNEVEVLRNESLAKDKALVKEKLAHSTAQCSRDSLRLDTNKSHDAYR 633          
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Match: A0A662X8Z1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X8Z1_9STRA)

HSP 1 Score: 200 bits (508), Expect = 3.910e-56
Identity = 114/188 (60.64%), Postives = 145/188 (77.13%), Query Frame = 1
Query:    1 MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR 564
            ++Q VD+ +ARFL +E  E  +  +L AL  +V  LEAEV QW  EE +Q++L+A+L  QR++K  EA  A  AE+ T Q++KMK+LVI DL+K+ N+T N L+EFSALYDVVKNERNKYVNLIQAS QALAEMKEKIKILHNEV++LRNESLAKDKAL KE++AH  +Q  RD LRL++N +   YR
Sbjct:  446 VKQQVDLLIARFLKREDGEKEQGVELEALSVQVTELEAEVAQWVVEESKQKRLIAMLTAQRELKAREATSALAAERQTQQELKMKELVIFDLAKKWNETTNHLREFSALYDVVKNERNKYVNLIQASTQALAEMKEKIKILHNEVEVLRNESLAKDKALVKEKLAHATAQCSRDSLRLDTNKSHDAYR 633          
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Match: H3G9R9_PHYRM (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=H3G9R9_PHYRM)

HSP 1 Score: 199 bits (505), Expect = 7.340e-56
Identity = 113/188 (60.11%), Postives = 145/188 (77.13%), Query Frame = 1
Query:    1 MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQRKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTNNLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRNESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR 564
            ++Q VD+ +ARFL QE  + ++ ++L AL  +V  LE+EV QW  EE +Q+KLV +L  QR++K  EA  A  AE+ T Q++K K+LVI DL+K+ N+T N L+EFSALYDVVKNERNKYVNLIQAS QALAEMKEKIKILHNEV++LRNESLAKDKAL KE++AH  +Q  RD LRL++N +   YR
Sbjct:  372 VKQQVDLLIARFLKQEDGDKTQSTELEALSAQVTQLESEVAQWLVEESKQKKLVTMLTAQRELKAREATSALTAERQTQQELKTKELVIFDLAKKWNETTNHLREFSALYDVVKNERNKYVNLIQASTQALAEMKEKIKILHNEVEVLRNESLAKDKALVKEKLAHATAQCSRDSLRLDTNKSHDAYR 559          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16256.4256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G000_ECTSI1.110e-10998.40Coiled-coil flagellar protein, move backward only ... [more]
A0A7S3XQY0_HETAK9.240e-7369.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1U464_9STRA3.970e-6062.16Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9Z3F5_9STRA8.810e-5860.11MBO2, coiled coil flagellar protein n=1 Tax=Achlya... [more]
A0A8K1C4E7_PYTOL2.130e-5760.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y4G9_9STRA3.590e-5762.23Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A329SVV3_9STRA7.770e-5761.17Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
A0A3R7J844_9STRA1.550e-5660.64Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A662X8Z1_9STRA3.910e-5660.64Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
H3G9R9_PHYRM7.340e-5660.11Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16256contigE-fasciculatus_F_contig16256:734..2775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.0
Seed ortholog evalue5.5e-90
Seed eggNOG ortholog2880.D7G000
Preferred nameCCDC146
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464
EggNOG OGs28H8C@1,2QPM4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size564
Cds size564
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16256.4256.1prot_E-fasciculatus_F_contig16256.4256.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16256 734..2775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928093.78949-CDS-E-fasciculatus_F_contig16256:733..7971622928093.78949-CDS-E-fasciculatus_F_contig16256:733..797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16256 734..797 -
1695995818.5227416-CDS-E-fasciculatus_F_contig16256:733..7971695995818.5227416-CDS-E-fasciculatus_F_contig16256:733..797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16256 734..797 -
1622928093.8041055-CDS-E-fasciculatus_F_contig16256:1306..13741622928093.8041055-CDS-E-fasciculatus_F_contig16256:1306..1374Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16256 1307..1374 -
1695995818.5413215-CDS-E-fasciculatus_F_contig16256:1306..13741695995818.5413215-CDS-E-fasciculatus_F_contig16256:1306..1374Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16256 1307..1374 -
1622928093.8159316-CDS-E-fasciculatus_F_contig16256:1735..19241622928093.8159316-CDS-E-fasciculatus_F_contig16256:1735..1924Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16256 1736..1924 -
1695995818.554326-CDS-E-fasciculatus_F_contig16256:1735..19241695995818.554326-CDS-E-fasciculatus_F_contig16256:1735..1924Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16256 1736..1924 -
1622928093.8261197-CDS-E-fasciculatus_F_contig16256:2178..23041622928093.8261197-CDS-E-fasciculatus_F_contig16256:2178..2304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16256 2179..2304 -
1695995818.5655122-CDS-E-fasciculatus_F_contig16256:2178..23041695995818.5655122-CDS-E-fasciculatus_F_contig16256:2178..2304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16256 2179..2304 -
1622928093.8728356-CDS-E-fasciculatus_F_contig16256:2658..27751622928093.8728356-CDS-E-fasciculatus_F_contig16256:2658..2775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16256 2659..2775 -
1695995818.5748565-CDS-E-fasciculatus_F_contig16256:2658..27751695995818.5748565-CDS-E-fasciculatus_F_contig16256:2658..2775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16256 2659..2775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16256.4256.1

>prot_E-fasciculatus_F_contig16256.4256.1 ID=prot_E-fasciculatus_F_contig16256.4256.1|Name=mRNA_E-fasciculatus_F_contig16256.4256.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=188bp
MRQDVDIGLARFLSQEMAENSKRSDLAALLEEVDGLEAEVLQWGEEEKRQ
RKLVALLKGQRDIKQAEALRAQQAEKDTAQQVKMKQLVIADLSKRCNDTN
NLLKEFSALYDVVKNERNKYVNLIQASHQALAEMKEKIKILHNEVDILRN
ESLAKDKALKKERVAHRASQAQRDGLRLESNNASMHYR
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mRNA from alignment at E-fasciculatus_F_contig16256:734..2775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16256.4256.1 ID=mRNA_E-fasciculatus_F_contig16256.4256.1|Name=mRNA_E-fasciculatus_F_contig16256.4256.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2042bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16256:734..2775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGACAGGACGTAGACATTGGGCTAGCGAGGTTCCTCTCCCAGGAGAT GGCAGAGAACTCGAAGCGATCAGACCTGGCGGCTCTACTGGAAGAAGTCG ACGGCCTCGAAGCCGAGGTCTGCACCCCTGCGTACGGTTTGCAACGCTTC TGTACTCCGTCGTGGAGGAGGGGGACTTATTGAAATAGTGGATAGGACGG GATACTTTGTGATAAAAAATATTGATGTACGTATATCGGGAGAGATGGCG TGGTGGGGACGAGGAAGCCTTGCTTGACGAAAACGTACGGGTGCAAGTAT AGAGCAAGGTCTGTCAACGTCGTCTCTGCCGCTGTGGAGTGGTGAGCTCA CCGTCCAACCCAACCATCAAAATCCCTGAAATCATCGCGGGCTGATCGTT TTACCGTCAAAGGCATGGCGTACCTCTGATGACTCCAGCGGCTATGCTGC TGTTGCGCGGACGTGCCACAGGTGCTGCAATGGGGCGAGGAAGAGAAGCG ACAGCGCAAGCTTGTAGCTCTTTTGAAAGGGCAGCGGGACATCAAGCAAG CCGAGGCTTTGAGGGCGCAACAGGCTGAGAAGGACACCGCGCAGCAGGTG CGTACGCGTGAGTCGTGCCGTTCCTCTTAACGTTCACGGGAAAAGGTTGT AAACCATCACACGGCATACACTTTGTCGACTGGCCCCGGGATAACTCACC CCCGGGATAACTCACCCACAGCTCAACGCTGGGATTGCTGCGTTATTATT TGACCACGTTCACGTGTCCGCTCTGGAGCCGTCTCGACGTGCTGCAATCT CGCACGACCCCCGACTACCGTTTCGACGTAAACCCTCCTCCTTTGTTCAA GGTAAAAATGAAGCAGTTGGTGATTGCAGACCTGTCGAAGAGGTGTAACG ACACCAACAACCTCCTCAAGGAGTTCTCCGCGCTCTACGACGTCGTCAAG AACGAGAGAAATAAATACGTCAATCTCATCCAGGCCAGCCACCAGGCTCT CGCCGAGATGAAGGAGAAGATCAAGATTCTCCACAACGAGGTGCCCGCCA ATGCCATGCTCGTGGTTGCTGCCAGCTGGAATACAGCTCACGTAGACGTT GGCACGGAGACAAGCATGCGGCTGTCGCGCGAGCGGCAGGGAAGGTCTTG GCGTCTACGAGACTTGAATGGCGTTGCGCTGAGTTTGCGTGGCTTGAACT TGTGTACCAGTATGCACCCCGGGGCGAATATGATGATTGAGGATACACTC TCAGCATGTGCTGACTTGTACTGAAGAGGAAATACCACGTACTCCAACGT CGCACACGTACACTCCCACGCAAGCACGCTTTTTCACCGTGTGACAGGCG GCTCCCTTCTGCCTTTCGTACGACCGCGTGTGCGTAACATTTGTTCAACA GGTGGACATCCTTCGAAACGAATCGCTCGCCAAGGACAAGGCTCTCAAGA AGGAACGCGTGGCTCACCGGTGAGAGGGTGGTGAACGACATTTCAATCTG AATGAAAATGAACACCGGGCGTGGTGGAGGACTGACGCGGCATCGAGCCG TGCAGGAGACTAGAACTGATTTCAAGAATTGATCAGGAGGCGGTTCGCCG CTCCTCTGCGACCCTGAATCTCCGGCAAAGAGTAGCACCGTTCACAAGTC TTGTCTCTCCACCACACATGCCAGTTTGTGCTGTCTAGGACAGGGAAGTT TGATACATATCTTCGAAAACAGGTACCACGAAAAGCTAAGAGAGCGTGCC TGGAACGACCATGACGTAGACGGCCACCATTTTTGGCCCACCAAGGTCGA AGTAGGGGCCTTTCGGATCGTTACTGCATTTCATTGGGCTTGTAGTCTAG ATGGAGGCCGGACCTGTTGGAATACTCCACCAAGGTGCCCTTGACGTTGC GACCCGATCACCGGGTTTCATCGCTAACCTCTCAAGCGACGCTCTGTGCG GGTCTGCTCTTCTGTATAACGTGTGCAGAGCATCTCAGGCCCAAAGGGAT GGGCTACGTTTGGAGTCAAACAACGCTTCCATGCACTACCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16256:734..2775-

>mRNA_E-fasciculatus_F_contig16256.4256.1 ID=mRNA_E-fasciculatus_F_contig16256.4256.1|Name=mRNA_E-fasciculatus_F_contig16256.4256.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1128bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16256:734..2775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGACAGGACGTAGACATTGGGCTAGCGAGGTTCCTCTCCCAGGAGAT
GGCAGAGAACTCGAAGCGATCAGACCTGGCGGCTCTACTGGAAGAAGTCG
ACGGCCTCGAAGCCGAGATGAGACAGGACGTAGACATTGGGCTAGCGAGG
TTCCTCTCCCAGGAGATGGCAGAGAACTCGAAGCGATCAGACCTGGCGGC
TCTACTGGAAGAAGTCGACGGCCTCGAAGCCGAGGTGCTGCAATGGGGCG
AGGAAGAGAAGCGACAGCGCAAGCTTGTAGCTCTTTTGAAAGGGCAGCGG
GACATCAAGCAAGCCGAGGCTTTGAGGGCGCAACAGGCTGAGAAGGACAC
CGCGCAGCAGGTGCTGCAATGGGGCGAGGAAGAGAAGCGACAGCGCAAGC
TTGTAGCTCTTTTGAAAGGGCAGCGGGACATCAAGCAAGCCGAGGCTTTG
AGGGCGCAACAGGCTGAGAAGGACACCGCGCAGCAGGTAAAAATGAAGCA
GTTGGTGATTGCAGACCTGTCGAAGAGGTGTAACGACACCAACAACCTCC
TCAAGGAGTTCTCCGCGCTCTACGACGTCGTCAAGAACGAGAGAAATAAA
TACGTCAATCTCATCCAGGCCAGCCACCAGGCTCTCGCCGAGATGAAGGA
GAAGATCAAGATTCTCCACAACGAGGTAAAAATGAAGCAGTTGGTGATTG
CAGACCTGTCGAAGAGGTGTAACGACACCAACAACCTCCTCAAGGAGTTC
TCCGCGCTCTACGACGTCGTCAAGAACGAGAGAAATAAATACGTCAATCT
CATCCAGGCCAGCCACCAGGCTCTCGCCGAGATGAAGGAGAAGATCAAGA
TTCTCCACAACGAGGTGGACATCCTTCGAAACGAATCGCTCGCCAAGGAC
AAGGCTCTCAAGAAGGAACGCGTGGCTCACCGGTGGACATCCTTCGAAAC
GAATCGCTCGCCAAGGACAAGGCTCTCAAGAAGGAACGCGTGGCTCACCG
AGCATCTCAGGCCCAAAGGGATGGGCTACGTTTGGAGTCAAACAACGCTT
CCATGCACTACCGGAGCATCTCAGGCCCAAAGGGATGGGCTACGTTTGGA
GTCAAACAACGCTTCCATGCACTACCGG
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