mRNA_E-fasciculatus_F_contig16252.4254.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16252.4254.1
Unique NamemRNA_E-fasciculatus_F_contig16252.4254.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16252.4254.1 vs. uniprot
Match: D8LB13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB13_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.270e-11
Identity = 50/106 (47.17%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:  217 TEEPLSRGAFTPSXXXXXXXXXXXXXXXXDTDAPIAGDSSGAPATGGASTTETASEEDGSGSDGLSEGAIAAISAAILALVGGGLTVAFKNNNIHCCHTQHVFNSA 534
            TE PL RG   PS                D DAP AG+S+  P TG A+  E   + D         GAIAAISA +LA+VGGGL VAFK+NNIHCC T H  +SA
Sbjct:  574 TEGPLPRGVSAPSSSATSTYEPSGSSS--DPDAPTAGNSTDEPGTGDAANIEMDDDGDXXXXXXXXXGAIAAISAVVLAVVGGGLGVAFKHNNIHCCQTTHFSSSA 677
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16252.4254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB13_ECTSI3.270e-1147.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16252contigE-fasciculatus_F_contig16252:70..2183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size821
Cds size540
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16252.4254.1prot_E-fasciculatus_F_contig16252.4254.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16252 349..2183 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928093.53479-UTR-E-fasciculatus_F_contig16252:69..3481622928093.53479-UTR-E-fasciculatus_F_contig16252:69..348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16252 70..348 -
1695995818.3975985-UTR-E-fasciculatus_F_contig16252:69..3481695995818.3975985-UTR-E-fasciculatus_F_contig16252:69..348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16252 70..348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928093.547907-CDS-E-fasciculatus_F_contig16252:348..6051622928093.547907-CDS-E-fasciculatus_F_contig16252:348..605Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16252 349..605 -
1695995818.408657-CDS-E-fasciculatus_F_contig16252:348..6051695995818.408657-CDS-E-fasciculatus_F_contig16252:348..605Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16252 349..605 -
1622928093.559849-CDS-E-fasciculatus_F_contig16252:1420..14921622928093.559849-CDS-E-fasciculatus_F_contig16252:1420..1492Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16252 1421..1492 -
1695995818.416955-CDS-E-fasciculatus_F_contig16252:1420..14921695995818.416955-CDS-E-fasciculatus_F_contig16252:1420..1492Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16252 1421..1492 -
1622928093.5734031-CDS-E-fasciculatus_F_contig16252:1650..17191622928093.5734031-CDS-E-fasciculatus_F_contig16252:1650..1719Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16252 1651..1719 -
1695995818.424506-CDS-E-fasciculatus_F_contig16252:1650..17191695995818.424506-CDS-E-fasciculatus_F_contig16252:1650..1719Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16252 1651..1719 -
1622928093.586139-CDS-E-fasciculatus_F_contig16252:1891..19661622928093.586139-CDS-E-fasciculatus_F_contig16252:1891..1966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16252 1892..1966 -
1695995818.4325407-CDS-E-fasciculatus_F_contig16252:1891..19661695995818.4325407-CDS-E-fasciculatus_F_contig16252:1891..1966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16252 1892..1966 -
1622928093.5984836-CDS-E-fasciculatus_F_contig16252:2116..21831622928093.5984836-CDS-E-fasciculatus_F_contig16252:2116..2183Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16252 2117..2183 -
1695995818.4421642-CDS-E-fasciculatus_F_contig16252:2116..21831695995818.4421642-CDS-E-fasciculatus_F_contig16252:2116..2183Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16252 2117..2183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16252.4254.1

>prot_E-fasciculatus_F_contig16252.4254.1 ID=prot_E-fasciculatus_F_contig16252.4254.1|Name=mRNA_E-fasciculatus_F_contig16252.4254.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=180bp
GLTEESSSNTTPSPSNVAANGTEATEEPSPSETLLTPSPSTTAVNGTEST
EEPSSSDLLLTPTPAAANVTATTEEPLSRGAFTPSPSETSAGAAEPPDSS
SDTDAPIAGDSSGAPATGGASTTETASEEDGSGSDGLSEGAIAAISAAIL
ALVGGGLTVAFKNNNIHCCHTQHVFNSAT*
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mRNA from alignment at E-fasciculatus_F_contig16252:70..2183-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16252.4254.1 ID=mRNA_E-fasciculatus_F_contig16252.4254.1|Name=mRNA_E-fasciculatus_F_contig16252.4254.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2114bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16252:70..2183- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCTAACCGAGGAGTCTTCGTCAAACACAACACCGTCGCCATCAAATGT
TGCAGCCAATGGTACAGGTATGATGGCCTAGTCACGCACAGGGCTCTTGG
GATACTGCACTGCGCCCTACCGGCGTACTACTCCGCCTGCATGAAGTTTG
ACGCACAAGGCTTGCTTCCCACTTCACTCTTTGGCCTCCCCGGCTGTCTG
CTCCCTTCGCCACACAGAGGCAACGGAGGAGCCTTCGCCAAGCGAAACAT
TGCTGACGCCGTCACCTTCGACAACCGCTGTAAATGGTACAGGTATGATG
ATCTGGTCACGTGGAAGATTCTTGGAGTCCTGAACTGCGCCAACCAGTGT
TGGATACAAAACGTAGTGCAATAAGTGCAATAACAACGGAACGAAATGCA
TGTGTGTCCTCATCCCTTCCCCCTGTCTGCTCCCTTCCCCCTGTCTGCTC
CCTGCGCCACACAGAGTCAACGGAGGAGCCTTCGTCAAGCGACCTGTTAC
TGACACCGACACCAGCAGCAGCAAATGTTACAGGTATGATGGGATTCACA
CATACGCTTCCGGAAACACTTCACCAGCGTCGGTTACAGTACTCAGCCTC
CTGGAAGTTCTACGAGCGAGAAGATTGGTAGCCGTTTCACTTTTTGCTCT
CCCCATTTGCTGGTTCTGTTTTTCCTGTCGACACCATGAAGCGACAACGG
AGGAGCCATTGTCAAGAGGCGCTTTTACGCCATCCCCATCAGAAACCTCA
GCAGGCGCTGCAGGTATGCATATGATGGTCTGGTAGCTAAACATGGGCAC
GATGCCGTTCGGCGACTGATCGATGTCCATCCATCCCCATGATGGGCCCG
ACAGGCTTGATTGATGACGCGAAATGGTCCTTTGAGCGCACAAGAGAGAG
AGAAAGCGGGAGAGAGAACGTAGACTGCAGGATATATGACCCCACCCAAA
GTAAGCCCAGGACTTCGCCACATACACGGGTTGGGCCGTTGGAGTGTTAC
CTCTACAATATTAGCTCCTCCCCAAGCGTATTTCAGATTTCGGGCACTAA
CCAAGGACTTTAATTAGCCGCATACGACTCAAGTTCTCTTTGCCACGATC
ACAAAGATTGCCCATGAATTCGATTCGCTTACCCGTTGTTCTCGAGATAT
ACCGTTGCTTACAGTAAGTTTGGGCTCGAACGTGATCGATGTTTGCACTG
TAACAACCAACCCGTAACAATATGGATCTCCTTTTTTCCGCCACGGTACT
TGCTCGCTATCGGCAAGAGATTAAAATGGCTTGACGGATGGTCGCCCACC
ACTGACAAGACGAACTTGTGTCCTGTAGATAGAGCATCTTCACTGGGCGT
GTGTTTAGTACCCACTCGTGCGGAGCTCCTAAGCTCTTCTTGCCTCCTTC
CTAGATGACGGTGCATTATATTTGCGACGCGCAGGCTCGGACAGGATAAC
CCCCAAGTCCCTTTAACCAACTCATGGAGGGGGCCGTCAGCACGACCCAA
TACGACGGGACCTATAAATTCTTGACCCTATGGTACCAACCTCGTATTGT
GAATATCCTGCCGTAAACTCCGATCCAGAGCCCCCGGACAGCTCTAGCGA
TACCGATGCTCCAATTGCCGGAGACAGCAGCGGTGCACCTGCCACAGGTG
GCGCCTCGACTACTGAGACAGCCAGTGAAGAAGACGGGAGTGGTAGCGAT
GGACTATCGGAAGGGGCAATTGCTGCGATATCAGCGGCGATTCTTGCCCT
TGTGGGTGGCGGATTGACCGTTGCGTTCAAGAACAACAATATCCACTGCT
GTCACACGCAACATGTCTTCAACTCTGCAACGTGATGCATCATGTGTTGA
GTTTGGTGTCGGAATATTATGGAGGATCAGCCAGCCATGCTTGTTCATTA
CCTCGACGAACAGCCCAGGCTGGCCACATCGTAGCTCAAGCCCGGCTAGT
CACTACGTTCTGAGAAACTTCAGTATTATCGCGAAAGTTCTGAAAAACGC
GAATGTTTTTCATTTCGGTGTGTCTAAATCCCCCCCCGTCTGTATCTCCG
CCCAAACAGCACCAATCGAGCCAGGACACGCGCAGTTGTGTTGCTGTGAG
GTAGGGCTATCACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16252:70..2183-

>mRNA_E-fasciculatus_F_contig16252.4254.1 ID=mRNA_E-fasciculatus_F_contig16252.4254.1|Name=mRNA_E-fasciculatus_F_contig16252.4254.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1080bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16252:70..2183- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCTAACCGAGGAGTCTTCGTCAAACACAACACCGTCGCCATCAAATGT
TGCAGCCAATGGTACAGGGGCTAACCGAGGAGTCTTCGTCAAACACAACA
CCGTCGCCATCAAATGTTGCAGCCAATGGTACAGAGGCAACGGAGGAGCC
TTCGCCAAGCGAAACATTGCTGACGCCGTCACCTTCGACAACCGCTGTAA
ATGGTACAGAGGCAACGGAGGAGCCTTCGCCAAGCGAAACATTGCTGACG
CCGTCACCTTCGACAACCGCTGTAAATGGTACAGAGTCAACGGAGGAGCC
TTCGTCAAGCGACCTGTTACTGACACCGACACCAGCAGCAGCAAATGTTA
CAGAGTCAACGGAGGAGCCTTCGTCAAGCGACCTGTTACTGACACCGACA
CCAGCAGCAGCAAATGTTACAGCGACAACGGAGGAGCCATTGTCAAGAGG
CGCTTTTACGCCATCCCCATCAGAAACCTCAGCAGGCGCTGCAGCGACAA
CGGAGGAGCCATTGTCAAGAGGCGCTTTTACGCCATCCCCATCAGAAACC
TCAGCAGGCGCTGCAGAGCCCCCGGACAGCTCTAGCGATACCGATGCTCC
AATTGCCGGAGACAGCAGCGGTGCACCTGCCACAGGTGGCGCCTCGACTA
CTGAGACAGCCAGTGAAGAAGACGGGAGTGGTAGCGATGGACTATCGGAA
GGGGCAATTGCTGCGATATCAGCGGCGATTCTTGCCCTTGTGGGTGGCGG
ATTGACCGTTGCGTTCAAGAACAACAATATCCACTGCTGTCACACGCAAC
ATGTCTTCAACTCTGCAACGTGAAGCCCCCGGACAGCTCTAGCGATACCG
ATGCTCCAATTGCCGGAGACAGCAGCGGTGCACCTGCCACAGGTGGCGCC
TCGACTACTGAGACAGCCAGTGAAGAAGACGGGAGTGGTAGCGATGGACT
ATCGGAAGGGGCAATTGCTGCGATATCAGCGGCGATTCTTGCCCTTGTGG
GTGGCGGATTGACCGTTGCGTTCAAGAACAACAATATCCACTGCTGTCAC
ACGCAACATGTCTTCAACTCTGCAACGTGA
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