mRNA_E-fasciculatus_F_contig1625.4252.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1625.4252.1
Unique NamemRNA_E-fasciculatus_F_contig1625.4252.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1625.4252.1 vs. uniprot
Match: A0A6H5KTF3_9PHAE (GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF3_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 2.340e-77
Identity = 164/243 (67.49%), Postives = 176/243 (72.43%), Query Frame = 1 
Query:   19 GTAPVPGGYLLGDKVQALCIPVGGATGSKEYISGEVAHVNPDGSLDVILADGRMKEEVPVAEIKFVSRSEPPSPAGSSAGEQSFWDGNEQGSGASTGRNSLISSPSSPKHLLDQTQSFGHETS-VKAPPSPAGAEGLGDDGKLRWQAGNNGSLDDILGTKLRAAEKEAAPATRDMRGEGGDNSAAXXXXXXXXXXXXXXATGSRETPKKRGSLDDILGIKVNRPDKRSMRNILEEGDSVEVLV 744
            GTAPVPGGY++GD VQALC PVGGATGSKEYISGEVAHVNP GSLDVILADGRM++EVPVAEIKFVSRS                                  SPSS KHLL+QTQSFG +TS  KAP SPA  EGL D GK RWQ   NG LDD+LGT+LR AEKEAAPATR            XXXXXXXXXXXXX A GSRETPKKRGSLDDILGIKVNRPD+RS+RNILEEGDSVE ++
Sbjct:  107 GTAPVPGGYIVGDNVQALCTPVGGATGSKEYISGEVAHVNPGGSLDVILADGRMRQEVPVAEIKFVSRS----------------------------------SPSSLKHLLEQTQSFGQKTSETKAPHSPADGEGLQDGGKPRWQTSTNGILDDVLGTQLRTAEKEAAPATR----------GTXXXXXXXXXXXXXAAAGSRETPKKRGSLDDILGIKVNRPDRRSIRNILEEGDSVEXVL 305
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BLAST of mRNA_E-fasciculatus_F_contig1625.4252.1 vs. uniprot
Match: D7FIF6_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF6_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 5.950e-48
Identity = 91/105 (86.67%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    7 GWEGGTAPVPGGYLLGDKVQALCIPVGGATGSKEYISGEVAHVNPDGSLDVILADGRMKEEVPVAEIKFVSRSEPPSPAGSSAGEQSFWDGNEQGSGASTGRNSL 321
            G E GTAPVP GYL+GD VQALC PVGGATGSKEYISGEVAHVNPDGSLDVILADGRM++EVP+AEIKFVSRSEPPSPAGSSAGEQSFWDGNEQGS +S G+NS+
Sbjct:  567 GREAGTAPVPIGYLVGDNVQALCTPVGGATGSKEYISGEVAHVNPDGSLDVILADGRMRQEVPIAEIKFVSRSEPPSPAGSSAGEQSFWDGNEQGSESSAGQNSV 671
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1625.4252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTF3_9PHAE2.340e-7767.49GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FIF6_ECTSI5.950e-4886.67Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1625contigE-fasciculatus_F_contig1625:40..2105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCellulose synthase (UDP-forming), family GT2
Ec32 orthologEc-28_000090.1
Exons3
Model size761
Cds size759
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1625.4252.1prot_E-fasciculatus_F_contig1625.4252.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1625 41..2105 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928093.3091686-CDS-E-fasciculatus_F_contig1625:40..4761622928093.3091686-CDS-E-fasciculatus_F_contig1625:40..476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1625 41..476 -
1695995818.2930477-CDS-E-fasciculatus_F_contig1625:40..4761695995818.2930477-CDS-E-fasciculatus_F_contig1625:40..476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1625 41..476 -
1622928093.3229425-CDS-E-fasciculatus_F_contig1625:950..10521622928093.3229425-CDS-E-fasciculatus_F_contig1625:950..1052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1625 951..1052 -
1695995818.3031542-CDS-E-fasciculatus_F_contig1625:950..10521695995818.3031542-CDS-E-fasciculatus_F_contig1625:950..1052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1625 951..1052 -
1622928093.338162-CDS-E-fasciculatus_F_contig1625:1884..21051622928093.338162-CDS-E-fasciculatus_F_contig1625:1884..2105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1625 1885..2105 -
1695995818.3133543-CDS-E-fasciculatus_F_contig1625:1884..21051695995818.3133543-CDS-E-fasciculatus_F_contig1625:1884..2105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1625 1885..2105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1625.4252.1

>prot_E-fasciculatus_F_contig1625.4252.1 ID=prot_E-fasciculatus_F_contig1625.4252.1|Name=mRNA_E-fasciculatus_F_contig1625.4252.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=253bp
SRGWEGGTAPVPGGYLLGDKVQALCIPVGGATGSKEYISGEVAHVNPDGS
LDVILADGRMKEEVPVAEIKFVSRSEPPSPAGSSAGEQSFWDGNEQGSGA
STGRNSLISSPSSPKHLLDQTQSFGHETSVKAPPSPAGAEGLGDDGKLRW
QAGNNGSLDDILGTKLRAAEKEAAPATRDMRGEGGDNSAAAAAAAFAAGA
AGAAATGSRETPKKRGSLDDILGIKVNRPDKRSMRNILEEGDSVEVLVPP
ADG
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mRNA from alignment at E-fasciculatus_F_contig1625:40..2105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1625.4252.1 ID=mRNA_E-fasciculatus_F_contig1625.4252.1|Name=mRNA_E-fasciculatus_F_contig1625.4252.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2066bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1625:40..2105- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCAGGGGATGGGAGGGCGGGACCGCCCCGGTGCCGGGAGGGTATCTCCT
CGGGGACAAGGTGCAAGCGCTGTGCATCCCGGTGGGCGGAGCGACCGGCT
CCAAGGAGTACATCTCCGGCGAGGTGGCGCACGTCAACCCCGACGGATCC
TTGGACGTTATCCTGGCGGACGGGAGGATGAAGGAGGAGGTGCCAGTTGC
GGAGATCAAGTTTGTCAGCAGGTATGTACCTCTTGCCCCCCCCGAGGTTG
AAGCTCCTGCGTGTCGGAGATAGAGACATGGACGAGTATTCCGCGAAACG
CACGCTTACTCGGGTCAAAGCGTGGATGCTGACGGGTTTGCGGTTGGATT
CCGTACAGGATGCACTCGAGTACCTTACACGAACGACCTGGGAATTGTCC
AATCTGTATCAGCTACATGTAGGATCCCTCGATTCGTTCACTCTGAACAA
AACGTGATCTAAACGGGATAGATATATTCCCAGCCCGAACATGAAACGGT
AGGACCTCGCCTCGAAGTACGAAGTCTACAAAGCAAGCTAGGTGCAGCAG
CCGACCACAACGGTAGGCAAAGTCTGGTCTCACATTAAACGTCCGACTAT
TAATCGTAGATTATGCAGGCAACAAGTGCGAGGACACCATCCTCCCTCCC
CCGCGCTCCCTTCGTGTGGAAGCGACTCTAGTCGTTAATCATACCATAGC
GAATAGACTGAGAACAGTATGCAAGAAATTGTCACCCAAACTTCTCCTCG
AAAAACGAGCTTGAACGCTTGAACGACTGTAGCTAGAGCGGGGAGTACCC
CCGTTCTTCAATTCTGTCATACCGGCGACAGTCTCTGAAGATCAACATCA
AACAAGGAAAGGCGTGCATGTCCCGCTCCCGCACACAACACCCTGACGCC
GGTGTCATCCGGTTTTCTTGCTGACCTTGAATGGGCAATCGAGGAGTAAG
CACGTGCGGAACGGACCATGCCCCCACTGGCCCGAGCTGTAGCCTCAACA
CTGCGGGCATGCAAGCAACGTCCCCCCCTCGCCCCCCCGTGCCCGTTCAC
CAGATCTGAGCCACCATCACCAGCGGGATCGTCAGCCGGGGAGCAGTCTT
TTTGGGACGGCAACGAGCAGGGAAGCGGAGCGTCGACAGGACGGAACAGC
TTAATGTGAGGGAGTGAGGGGAGGGACGGAGCGACTGACTTGTGTTTAGC
CGGGAATCGAAGCACACGTGGCTCTGTTTTTCTGCCGCGCGACTGCTCCT
CCTACAACCGCCAAGCCCGTCGTTTTTCCATTTGACAAGGTGGCGGAGAG
AGACAAGCTGCAATACCACCGCCAAAGATATTTATTACCGGCATTCGTGT
TAACACGAGTCGCTACTGTTTGTGTCTCGGTTGTTCTTCCATGGGTGATG
GGGTACGCTCTGGTATAAAATAGCTACCTCGACATGCACTTTGAACCGGC
GTCAAACACTAGGATGAGTCACCCAGCGGCTCCTTGCTTTGGCCACAGAG
CTCGTTCACCGCCCGACATACCTGCTACGAGAGTCCAAACAGGTGCTCAA
GGAACGCTCAACAACCCTCCAAAACGGGTGTTTGTTTTATCGGGTGATGT
GGCCCTTTTTGCCCTCTTGCGTGACACAGCTCCTCTCCGTCTTCTCCCAA
GCACCTCCTCGACCAAACCCAATCGTTTGGACATGAGACAAGCGTAAAAG
CACCGCCTTCCCCGGCTGGAGCTGAAGGCCTTGGGGATGATGGAAAACTC
CGATGGCAAGCGGGAAACAACGGCAGCCTCGACGATATTCTGGGCACCAA
GTTGCGCGCAGCGGAGAAGGAAGCCGCACCCGCCACGCGGGATATGAGAG
GAGAGGGCGGCGACAACTCGGCTGCGGCTGCGGCTGCGGCATTTGCGGCG
GGGGCGGCGGGGGCGGCTGCGACAGGGAGCAGAGAGACGCCGAAGAAACG
GGGAAGCCTGGACGACATTCTCGGAATAAAGGTCAACAGGCCGGACAAGA
GGAGCATGCGAAACATCTTGGAGGAAGGGGACAGCGTCGAGGTTTTAGTC
CCGCCAGCGGACGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1625:40..2105-

>mRNA_E-fasciculatus_F_contig1625.4252.1 ID=mRNA_E-fasciculatus_F_contig1625.4252.1|Name=mRNA_E-fasciculatus_F_contig1625.4252.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1625:40..2105- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCAGGGGATGGGAGGGCGGGACCGCCCCGGTGCCGGGAGGGTATCTCCT
CGGGGACAAGGTGCAAGCGCTGTGCATCCCGGTGGGCGGAGCGACCGGCT
CCAAGGAGTACATCTCCGGCGAGGTGGCGCACGTCAACCCCGACGGATCC
TTGGACGTTATCCTGGCGGACGGGAGGATGAAGGAGGAGGTGCCAGTTGC
GGAGATCAAGTTTGTCAGCAGTCCAGGGGATGGGAGGGCGGGACCGCCCC
GGTGCCGGGAGGGTATCTCCTCGGGGACAAGGTGCAAGCGCTGTGCATCC
CGGTGGGCGGAGCGACCGGCTCCAAGGAGTACATCTCCGGCGAGGTGGCG
CACGTCAACCCCGACGGATCCTTGGACGTTATCCTGGCGGACGGGAGGAT
GAAGGAGGAGGTGCCAGTTGCGGAGATCAAGTTTGTCAGCAGATCTGAGC
CACCATCACCAGCGGGATCGTCAGCCGGGGAGCAGTCTTTTTGGGACGGC
AACGAGCAGGGAAGCGGAGCGTCGACAGGACGGAACAGCTTAATATCTGA
GCCACCATCACCAGCGGGATCGTCAGCCGGGGAGCAGTCTTTTTGGGACG
GCAACGAGCAGGGAAGCGGAGCGTCGACAGGACGGAACAGCTTAATCTCC
TCTCCGTCTTCTCCCAAGCACCTCCTCGACCAAACCCAATCGTTTGGACA
TGAGACAAGCGTAAAAGCACCGCCTTCCCCGGCTGGAGCTGAAGGCCTTG
GGGATGATGGAAAACTCCGATGGCAAGCGGGAAACAACGGCAGCCTCGAC
GATATTCTGGGCACCAAGTTGCGCGCAGCGGAGAAGGAAGCCGCACCCGC
CACGCGGGATATGAGAGGAGAGGGCGGCGACAACTCGGCTGCGGCTGCGG
CTGCGGCATTTGCGGCGGGGGCGGCGGGGGCGGCTGCGACAGGGAGCAGA
GAGACGCCGAAGAAACGGGGAAGCCTGGACGACATTCTCGGAATAAAGGT
CAACAGGCCGGACAAGAGGAGCATGCGAAACATCTTGGAGGAAGGGGACA
GCGTCGAGGTTTTAGTCCCGCCAGCGGACGGACTCCTCTCCGTCTTCTCC
CAAGCACCTCCTCGACCAAACCCAATCGTTTGGACATGAGACAAGCGTAA
AAGCACCGCCTTCCCCGGCTGGAGCTGAAGGCCTTGGGGATGATGGAAAA
CTCCGATGGCAAGCGGGAAACAACGGCAGCCTCGACGATATTCTGGGCAC
CAAGTTGCGCGCAGCGGAGAAGGAAGCCGCACCCGCCACGCGGGATATGA
GAGGAGAGGGCGGCGACAACTCGGCTGCGGCTGCGGCTGCGGCATTTGCG
GCGGGGGCGGCGGGGGCGGCTGCGACAGGGAGCAGAGAGACGCCGAAGAA
ACGGGGAAGCCTGGACGACATTCTCGGAATAAAGGTCAACAGGCCGGACA
AGAGGAGCATGCGAAACATCTTGGAGGAAGGGGACAGCGTCGAGGTTTTA
GTCCCGCCAGCGGACGGA
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