mRNA_E-fasciculatus_F_contig16242.4249.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16242.4249.1
Unique NamemRNA_E-fasciculatus_F_contig16242.4249.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Match: D7FZU0_ECTSI (Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU0_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.250e-55
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 3 
Query:   57 APTGHGGRCRSVHGHGGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTKAKGITRRLAPYTPLL 368
            AP GHGGRCRSVH HGGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNT+AKGITRRLAPYTPLL
Sbjct:  115 APAGHGGRCRSVHSHGGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTRAKGITRRLAPYTPLL 218
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BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Match: A0A6H5KM36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM36_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 9.550e-42
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 3 
Query:  102 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTKAKGITRRLAPYTPLL 368
            GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNT+AKGITRRLAPYTPLL
Sbjct:  251 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTRAKGITRRLAPYTPLL 339
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BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Match: A0A835YU74_9STRA (Bile acid:sodium symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU74_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.680e-20
Identity = 56/88 (63.64%), Postives = 68/88 (77.27%), Query Frame = 3 
Query:  102 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTKAKGITRRLAPYTPL 365
            GGTASNLV LIA  D+ALSV +T  ST+LA   T  LT+ LVG +V +SA  L+ +TAQVVF PVA+GLLL +KA+G TRRL+PYTPL
Sbjct:  121 GGTASNLVALIAGADIALSVLLTAASTVLATAATPLLTRALVGGVVQVSARQLVVSTAQVVFAPVALGLLLASKAQGFTRRLSPYTPL 208
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BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Match: B5Y441_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y441_PHATC)

HSP 1 Score: 82.0 bits (201), Expect = 3.990e-16
Identity = 55/107 (51.40%), Postives = 71/107 (66.36%), Query Frame = 3 
Query:   51 SAAPTGHG---GRCRSVHGHGGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTKAKGITRRLAPYTP 362
            S+ PTG     G C      GGTASNLV+LIA  DVALSV +TT ST+LA + T  L K LVG+ V +S V L++ATA+VV LPV +G++LN K   + R L+ +TP
Sbjct:   87 SSGPTGPSLFLGLCLVGCSPGGTASNLVSLIAQADVALSVILTTCSTVLAVLATPLLVKLLVGSTVAVSGVALVQATARVVLLPVLLGMILNAKLPRLARFLSRFTP 193
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BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Match: A0A7S1GTK9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GTK9_HEMAN)

HSP 1 Score: 75.9 bits (185), Expect = 2.370e-15
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 3 
Query:  102 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTKAKGITRRLAPYTPLL 368
            GGTASNLVTLIA  DVALSV MT VST  A ++T  LT  L G+LV + A  L+ +T QVV  PV +G+ +N     +++R++ +TPLL
Sbjct:   11 GGTASNLVTLIAKADVALSVMMTAVSTAAAPIMTPALTSLLAGSLVPVDAAGLLISTLQVVLFPVTLGVAINAFFPSLSKRVSGFTPLL 99
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BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Match: A0A7S0HP89_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HP89_9CRYP)

HSP 1 Score: 79.7 bits (195), Expect = 3.400e-15
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 3 
Query:  102 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTKAKGITRRLAPYTPLL 368
            GGTASNLVTLIA  DVALSV MTTVST+ A ++T  LT  L G+LV + A  L+ +T QVV  PV +GL +NT A G+ + ++  TPLL
Sbjct:  211 GGTASNLVTLIAKADVALSVLMTTVSTMAAPIMTPLLTSILAGSLVPVDASGLLISTLQVVLAPVGLGLAINTFAPGLCKMVSGVTPLL 299
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BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Match: A0A2W4SLW9_9PROT (Transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4SLW9_9PROT)

HSP 1 Score: 78.6 bits (192), Expect = 8.270e-15
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 3 
Query:  102 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTKAKGITRRLAPYTPL 365
            GGTASN+VT IA  DVALSV+MT VSTLLA ++T  LT  L G+ V++ A+ L  +T QVV LP+A GLLL      +TR + P+ PL
Sbjct:  105 GGTASNVVTYIARADVALSVTMTAVSTLLAVIMTPTLTALLAGSRVEVPALGLFLSTVQVVILPIAAGLLLKRWFPAVTRIVLPFAPL 192
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BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Match: A0A1E7ERJ9_9STRA (SBF-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ERJ9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.390e-14
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 3 
Query:  102 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTKAKGITRRLAPYTP 362
            GGTASNLV+LIA  DVALSV +T+ ST+LA++ T  L K LVG+ + IS  TL  ATA+VV LPV +G+++N+KA  +  R++ + P
Sbjct:  123 GGTASNLVSLIAKADVALSVLLTSCSTILASIATPLLVKLLVGSTIAISGWTLCTATARVVLLPVLLGMIINSKAPNLASRISRFMP 209
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BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Match: A0A448ZAR5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZAR5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.400e-14
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = 3 
Query:  102 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTKAKGITRRLAPYTP 362
            GGTASNLV+LIA  DVALSV +T+ ST+LA++ T  L K LVG+ + IS  TL  ATA+VV LPV +G+L+N +A  +  R++ +TP
Sbjct:  208 GGTASNLVSLIAKADVALSVMLTSCSTILASIATPLLVKLLVGSTIAISGWTLCAATARVVLLPVLLGMLVNAQAPKLASRISRFTP 294
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BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Match: L1JAR9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAR9_GUITC)

HSP 1 Score: 77.8 bits (190), Expect = 1.780e-14
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 3 
Query:  102 GGTASNLVTLIANGDVALSVSMTTVSTLLAAVITGPLTKFLVGALVDISAVTLMKATAQVVFLPVAMGLLLNTKAKGITRRLAPYTPLL 368
            GGTASNLVTLIA  DVALSV MTTVST+ A ++T  LT  L G+LV + A  L+ +T QVV  PV +GL +NT A  + + ++  TPLL
Sbjct:  103 GGTASNLVTLIAKADVALSVLMTTVSTMAAPIMTPLLTSILAGSLVPVDASGLLISTLQVVLAPVGLGLAINTFAPAVCKMVSGVTPLL 191
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16242.4249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZU0_ECTSI2.250e-5597.12Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarp... [more]
A0A6H5KM36_9PHAE9.550e-4298.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YU74_9STRA1.680e-2063.64Bile acid:sodium symporter n=1 Tax=Tribonema minus... [more]
B5Y441_PHATC3.990e-1651.40Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S1GTK9_HEMAN2.370e-1551.69Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0HP89_9CRYP3.400e-1556.18Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A2W4SLW9_9PROT8.270e-1554.55Transporter n=1 Tax=Proteobacteria bacterium TaxID... [more]
A0A1E7ERJ9_9STRA1.390e-1452.87SBF-domain-containing protein n=1 Tax=Fragilariops... [more]
A0A448ZAR5_9STRA1.400e-1454.02Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
L1JAR9_GUITC1.780e-1455.06Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16242contigE-fasciculatus_F_contig16242:403..2454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size368
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16242.4249.1prot_E-fasciculatus_F_contig16242.4249.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16242 434..1988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928093.0006804-UTR-E-fasciculatus_F_contig16242:402..4331622928093.0006804-UTR-E-fasciculatus_F_contig16242:402..433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16242 403..433 +
1695995818.1593409-UTR-E-fasciculatus_F_contig16242:402..4331695995818.1593409-UTR-E-fasciculatus_F_contig16242:402..433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16242 403..433 +
1622928093.0475154-UTR-E-fasciculatus_F_contig16242:1988..20191622928093.0475154-UTR-E-fasciculatus_F_contig16242:1988..2019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16242 1989..2019 +
1695995818.2096815-UTR-E-fasciculatus_F_contig16242:1988..20191695995818.2096815-UTR-E-fasciculatus_F_contig16242:1988..2019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16242 1989..2019 +
1622928093.0663764-UTR-E-fasciculatus_F_contig16242:2364..24541622928093.0663764-UTR-E-fasciculatus_F_contig16242:2364..2454Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16242 2365..2454 +
1695995818.2216418-UTR-E-fasciculatus_F_contig16242:2364..24541695995818.2216418-UTR-E-fasciculatus_F_contig16242:2364..2454Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16242 2365..2454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928093.0143595-CDS-E-fasciculatus_F_contig16242:433..5041622928093.0143595-CDS-E-fasciculatus_F_contig16242:433..504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16242 434..504 +
1695995818.175313-CDS-E-fasciculatus_F_contig16242:433..5041695995818.175313-CDS-E-fasciculatus_F_contig16242:433..504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16242 434..504 +
1622928093.0310717-CDS-E-fasciculatus_F_contig16242:1843..19881622928093.0310717-CDS-E-fasciculatus_F_contig16242:1843..1988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16242 1844..1988 +
1695995818.1935139-CDS-E-fasciculatus_F_contig16242:1843..19881695995818.1935139-CDS-E-fasciculatus_F_contig16242:1843..1988Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16242 1844..1988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16242.4249.1

>prot_E-fasciculatus_F_contig16242.4249.1 ID=prot_E-fasciculatus_F_contig16242.4249.1|Name=mRNA_E-fasciculatus_F_contig16242.4249.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
MTSPPSLGGPDRSWRALPLSTRSWGHGIEPRYPYRERGCGAVGVDDDGVN
PAGGRDHGASHEVSRRRAGGH*
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mRNA from alignment at E-fasciculatus_F_contig16242:403..2454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16242.4249.1 ID=mRNA_E-fasciculatus_F_contig16242.4249.1|Name=mRNA_E-fasciculatus_F_contig16242.4249.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2052bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16242:403..2454+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTTTGCATGGGAATGACCCTCACCCTGGATGACTTCGCCGCCGTCGC
TCGGCGGCCCCGACCGGTCATGGCGGGCGTTGCCGCTCAGTACACGGTCA
TGGTGAGCCGATCGATGGGGGGGGGTGGGGGGAGCGGAGACCTGCAAATG
CTGCTCAGGTTTTGAGACAGAGAGAATCTGCAGGGAGACTTGGAGGGACC
GAAGTTTGCGCTCAATACAGGTAGCATAGCAGTCGTAGGGAGTCGGTGGG
GGGAAAGAGAGACCATTGTTGCCGCTCAGTACACAGTCATGGTGAGTCAA
TGAGGGGACGAGAGACCACCGTTACCGCTCAATACACATATGAACTCCTA
CTAATACAAGTAAGGCATGCACCATTTCACGAGCACCACCCTTCCCCCCG
GTCCCCACGTCCCCATCCCCCGGCGTGTTCTCTATTCACCCTCGTGGCGG
CGGCGGCGGGGGATAACACTGTTTGCTGCTCCTTCTACATTTGGCGCGAA
AAAACACGAACACCGCAACAAAAACAAAAAGCCTGCTCTGGGGTTTCTTT
CGGGGAGACTGTTCAACCTTCCGCCGGGTCTTGCCGCCGGAGTTACCCTT
GTCGGCTGCTGTCCAGGTGGGTGCATGTGGTGAGGTCGGGGGCCCGGGGG
CGGGGAGAGAGAGACTGTTTCTTTTTTTGTCACGCGGCGGAGACAGGGCT
GGGGATGTCTACCGTTTTCCGGCGGCAATTGCTCACTCCCCTGCGGGCTG
GTGTCCGATGGGATGAGGGGTAGAGCGGAGCGGGAGGGTTGGCACAAGTT
ACATTCGATAGTCCTGTAGTCCCCATGCCATGGGCTGGTTTCTAATGGTA
CAAGAGGTACGGCGGAGCGGGGGGGGTTACCATGCGTTCCATGCGATAGT
CCTGCCGTGCTGCTGTGCTCGTATTCCGTTCTTTGGGGGCCAGATTTTTC
GTTCCGCCGTAATATATGTAACAAGTTTTCTCTTGCCATGCGTTTTTTTT
GTGTGGCGGTGGTAGGAGCGCCCGCAGGGTGCTGGGTGGCCAAATTGAAT
TTGTTACACTGTTATTGTTGGGTGCGGGCTTGTAAGGTTTTGGTGTGCCA
TGACACAGTCTACGATGCACTGTTCGCACGCCGTTCATATTGTGGGTTTT
GTATGAGGAACACAAGTATTGCGGGTAGGTAATGCGTGATTTGTTGGTTA
CGTTTGATGATACGAGGAATACTCGCATCGCAGGCTGGTGAGACCGCCAT
CTTTAGCGTATTCTACAGACAACAATCATTTAAAGAAACTTATCCCACTG
GTCTACTTGCAATTTTATTTCGTTGTGCCTTGTTTGCGGTGCATTGGTTG
GTGAAACCATTGCGCAGCAGCTCCAGTATACCAGGATGAAGACAACCCTC
CTCGATGCCCACGCCTCTATTGTCCACCACCGTGTGCATAGGGGGCACGG
CATCGAACCTCGTTACCCTTATCGCGAACGGGGATGTGGCGCTGTCGGTG
TCGATGACGACGGTGTCAACCCTGCTGGCGGCCGTGATCACGGGGCCTCT
CACGAAGTTTCTCGTCGGCGCGCTGGTGGACATTAGCGCCGTTACTCTGA
TGAAGGCTACGGCGCAAGTGAGACAGACCCTACTAACTGGTGTTGTTGCA
TCCTAAGGATGCAGGCTCTCGTATCGATCAGGACATGTTTGCACTCTCCC
CGATGATTGAGCGCATGCGTTTGTCCACAAGCTTTGTTTGTTAGGCATGC
GTGTTTCTTTCATGGCGCTGCCCACGATGCGGATAGACAAACACCCCAGC
CGCGTGGTGGGTGGTGGTAGTGGGCAACGTGGGTGCTTACTGGATCCTTG
CGTTATATACGACATCACAAGTAGCACTGTAGACCACTACCACCACCACT
ACCAACAACAACAACAACAACAACAATGCACGACAACAAATGGCAATAAC
AACAACGAACAGGTGGTGTTTTTGCCGGTGGCGATGGGACTGCTGCTCAA
CACAAAGGCCAAGGGAATCACACGCCGCCTTGCCCCCTACACGCCGCTCC
TG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16242:403..2454+

>mRNA_E-fasciculatus_F_contig16242.4249.1 ID=mRNA_E-fasciculatus_F_contig16242.4249.1|Name=mRNA_E-fasciculatus_F_contig16242.4249.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16242:403..2454+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTTCGCCGCCGTCGCTCGGCGGCCCCGACCGGTCATGGCGGGCGTT
GCCGCTCAGTACACGGTCATGATGACTTCGCCGCCGTCGCTCGGCGGCCC
CGACCGGTCATGGCGGGCGTTGCCGCTCAGTACACGGTCATGGGGGCACG
GCATCGAACCTCGTTACCCTTATCGCGAACGGGGATGTGGCGCTGTCGGT
GTCGATGACGACGGTGTCAACCCTGCTGGCGGCCGTGATCACGGGGCCTC
TCACGAAGTTTCTCGTCGGCGCGCTGGTGGACATTAGGGGGCACGGCATC
GAACCTCGTTACCCTTATCGCGAACGGGGATGTGGCGCTGTCGGTGTCGA
TGACGACGGTGTCAACCCTGCTGGCGGCCGTGATCACGGGGCCTCTCACG
AAGTTTCTCGTCGGCGCGCTGGTGGACATTAG
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