mRNA_E-fasciculatus_F_contig16236.4246.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16236.4246.1
Unique NamemRNA_E-fasciculatus_F_contig16236.4246.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16236.4246.1 vs. uniprot
Match: D8LKD7_ECTSI (ACB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD7_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.090e-50
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:    1 LLISQELMANARQYGEADKLALYGLFKQAKWGDCPAGLVTAQRGNPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVMSGTSDSS 282
            +  ++ELMANARQYGEADKLALYGLFKQAKWGDCP GLVTAQRGNPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVV+SG SD+S
Sbjct:  111 MFYTKELMANARQYGEADKLALYGLFKQAKWGDCPDGLVTAQRGNPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVISGNSDTS 204
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BLAST of mRNA_E-fasciculatus_F_contig16236.4246.1 vs. uniprot
Match: A0A6H5LAN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN0_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 3.620e-47
Identity = 97/134 (72.39%), Postives = 104/134 (77.61%), Query Frame = 1 
Query:    1 LLISQELMANARQYGEADKLALYGLFKQAKWGDCPAGLVTAQRGNPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVMSGTSDSS-----------SSNTTPAPSSLNTPTPRRGPGASLSPPRP 369
            +  ++ELM+NARQYGEADKLALYGLFKQAKWGDCPAG+V AQRG+PVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVMSG SD+S           S   TPA        P RG GAS SPP P
Sbjct: 1754 MFYTKELMSNARQYGEADKLALYGLFKQAKWGDCPAGMVAAQRGDPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVMSGNSDTSXXXXXXXXXXXSLLDTPAGGXXGHRMPGRGLGASPSPPCP 1887
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16236.4246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKD7_ECTSI2.090e-5090.43ACB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LAN0_9PHAE3.620e-4772.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16236contigE-fasciculatus_F_contig16236:1496..2797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcyl-CoA-binding protein, ACBP
Ec32 orthologEc-05_001140.1
Exons2
Model size573
Cds size552
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16236.4246.1prot_E-fasciculatus_F_contig16236.4246.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16236 1496..2776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928092.3671544-CDS-E-fasciculatus_F_contig16236:1495..18401622928092.3671544-CDS-E-fasciculatus_F_contig16236:1495..1840Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16236 1496..1840 -
1695995817.9264264-CDS-E-fasciculatus_F_contig16236:1495..18401695995817.9264264-CDS-E-fasciculatus_F_contig16236:1495..1840Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16236 1496..1840 -
1622928092.3814662-CDS-E-fasciculatus_F_contig16236:2569..27761622928092.3814662-CDS-E-fasciculatus_F_contig16236:2569..2776Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16236 2570..2776 -
1695995817.936266-CDS-E-fasciculatus_F_contig16236:2569..27761695995817.936266-CDS-E-fasciculatus_F_contig16236:2569..2776Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16236 2570..2776 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928092.3933315-UTR-E-fasciculatus_F_contig16236:2776..27971622928092.3933315-UTR-E-fasciculatus_F_contig16236:2776..2797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16236 2777..2797 -
1695995817.9459307-UTR-E-fasciculatus_F_contig16236:2776..27971695995817.9459307-UTR-E-fasciculatus_F_contig16236:2776..2797Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16236 2777..2797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16236.4246.1

>prot_E-fasciculatus_F_contig16236.4246.1 ID=prot_E-fasciculatus_F_contig16236.4246.1|Name=mRNA_E-fasciculatus_F_contig16236.4246.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=184bp
MANARQYGEADKLALYGLFKQAKWGDCPAGLVTAQRGNPVGSVKVRAWVT
NRGKPTAQAMQEFIVVLGRVSPGWESRVVMSGTSDSSSSNTTPAPSSLNT
PTPRRGPGASLSPPRPPADHAATAAAAAGLPPGGGADGGGGGGPRLARMG
STASSVMSSPDGLPTLVGGGPRGAARGGIVAAPP
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mRNA from alignment at E-fasciculatus_F_contig16236:1496..2797-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16236.4246.1 ID=mRNA_E-fasciculatus_F_contig16236.4246.1|Name=mRNA_E-fasciculatus_F_contig16236.4246.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1302bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16236:1496..2797- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTCTCATTTCGCAGGAGCTCATGGCTAACGCGAGGCAGTACGGGGAGGC
GGACAAGCTGGCTCTGTACGGTCTGTTCAAGCAGGCCAAGTGGGGCGATT
GCCCTGCCGGCCTGGTGACGGCGCAGAGGGGGAATCCCGTCGGGTCTGTC
AAGGTCCGCGCCTGGGTGACCAATCGCGGGAAGCCCACCGCCCAGGCCAT
GCAGGAATTCATCGTGGTTCTTGGGAGGGTGAGTGTGCTATTTAAATAGC
GTACAATGTAGGACAAGATGCCACGCCCCCTGGACCGATTTTCAAAACCC
GATTACTCCACGGCGAAGAGAGGGTGCCTGAATGAAACGACATGTTGTAT
CGGAAAGCTCTCGACGAGGCAGACGGCTTCGACGCCGCCGTTTTCGGCGC
TGCCAGTCATTCATCATTCTGTTGTGGAAAAATCGAGCTTTGAAAACAGG
TTTGGGGGGTGTGGTATCTTGTGTCACGTCACGTACGGTATGTAGGTAGG
TTGCGTAAGATGCTACGCCCACACCCAAGCACATGGACCGATTGTCGAAG
CTCGAGTGCAGAAACAGTGAAGAGTGAAGAACTGAGGCGTGTGTCCAAGA
GCCAAGAGTGAGATGTTTGAGCTGCGTGCTGTAGCAGTGCCTACCTGGAT
ACCTTTTCAAGGTCGCCTTGAGTTGAACGTGGTTACTTCGTGCAGCTGTC
AATCAATCGATTGGATTGCCGACTTTTCGTCGCTGTTGTTGTGTGTTGTG
CATGACGACCCATCATGGCGCGCGGTTCAGGAAAAACTATACATACTGCT
GTGTTTTGTGTAGAAACAATACCCTCTTCTTTCTAACCTCTTTTTTGAAT
CCCTGTTTCTCCTCCCGCGCGGACGGCCATGTTTCGTCTGCGGCTGCTGT
CTATCCTTTTTTTTTTCCGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTCAGGTATCTCCGGGATGGGAGTCCAGGGTAGTCATGTCGGGCACCA
GCGACAGCAGCAGCAGCAACACCACCCCCGCCCCCTCCTCACTCAACACC
CCCACGCCCAGGCGTGGCCCCGGCGCATCACTATCGCCCCCCCGCCCCCC
CGCTGACCACGCCGCCACTGCCGCCGCCGCCGCCGGCCTACCCCCGGGGG
GAGGAGCGGACGGCGGCGGCGGCGGGGGACCCCGTCTCGCCCGCATGGGG
AGCACCGCCTCCTCGGTGATGTCATCTCCTGACGGACTCCCCACCCTTGT
CGGGGGGGGCCCGCGGGGGGCCGCCAGGGGGGGGATAGTTGCTGCCCCCC
CC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16236:1496..2797-

>mRNA_E-fasciculatus_F_contig16236.4246.1 ID=mRNA_E-fasciculatus_F_contig16236.4246.1|Name=mRNA_E-fasciculatus_F_contig16236.4246.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16236:1496..2797- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTAACGCGAGGCAGTACGGGGAGGCGGACAAGCTGGCTCTGTACGG
TCTGTTCAAGCAGGCCAAGTGGGGCGATTGCCCTGCCGGCCTGGTGACGG
CGCAGAGGGGGAATCCCGTCGGGTCTGTCAAGGTCCGCGCCTGGGTGACC
AATCGCGGGAAGCCCACCGCCCAGGCCATGCAGGAATTCATCGTGGTTCT
TGGGAGGATGGCTAACGCGAGGCAGTACGGGGAGGCGGACAAGCTGGCTC
TGTACGGTCTGTTCAAGCAGGCCAAGTGGGGCGATTGCCCTGCCGGCCTG
GTGACGGCGCAGAGGGGGAATCCCGTCGGGTCTGTCAAGGTCCGCGCCTG
GGTGACCAATCGCGGGAAGCCCACCGCCCAGGCCATGCAGGAATTCATCG
TGGTTCTTGGGAGGGTATCTCCGGGATGGGAGTCCAGGGTAGTCATGTCG
GGCACCAGCGACAGCAGCAGCAGCAACACCACCCCCGCCCCCTCCTCACT
CAACACCCCCACGCCCAGGCGTGGCCCCGGCGCATCACTATCGCCCCCCC
GCCCCCCCGCTGACCACGCCGCCACTGCCGCCGCCGCCGCCGGCCTACCC
CCGGGGGGAGGAGCGGACGGCGGCGGCGGCGGGGGACCCCGTCTCGCCCG
CATGGGGAGCACCGCCTCCTCGGTGATGTCATCTCCTGACGGACTCCCCA
CCCTTGTCGGGGGGGGCCCGCGGGGGGCCGCCAGGGGGGGGATAGTTGCT
GCCCCCCCCGTATCTCCGGGATGGGAGTCCAGGGTAGTCATGTCGGGCAC
CAGCGACAGCAGCAGCAGCAACACCACCCCCGCCCCCTCCTCACTCAACA
CCCCCACGCCCAGGCGTGGCCCCGGCGCATCACTATCGCCCCCCCGCCCC
CCCGCTGACCACGCCGCCACTGCCGCCGCCGCCGCCGGCCTACCCCCGGG
GGGAGGAGCGGACGGCGGCGGCGGCGGGGGACCCCGTCTCGCCCGCATGG
GGAGCACCGCCTCCTCGGTGATGTCATCTCCTGACGGACTCCCCACCCTT
GTCGGGGGGGGCCCGCGGGGGGCCGCCAGGGGGGGGATAGTTGCTGCCCC
CCCC
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