mRNA_E-fasciculatus_F_contig16236.4245.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16236.4245.1
Unique NamemRNA_E-fasciculatus_F_contig16236.4245.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16236.4245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16236contigE-fasciculatus_F_contig16236:5..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size470
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16236.4245.1prot_E-fasciculatus_F_contig16236.4245.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16236 10..447 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928092.4842722-UTR-E-fasciculatus_F_contig16236:4..91622928092.4842722-UTR-E-fasciculatus_F_contig16236:4..9Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16236 5..9 +
1695995817.956936-UTR-E-fasciculatus_F_contig16236:4..91695995817.956936-UTR-E-fasciculatus_F_contig16236:4..9Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16236 5..9 +
1622928092.508826-UTR-E-fasciculatus_F_contig16236:447..4741622928092.508826-UTR-E-fasciculatus_F_contig16236:447..474Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16236 448..474 +
1695995817.9727123-UTR-E-fasciculatus_F_contig16236:447..4741695995817.9727123-UTR-E-fasciculatus_F_contig16236:447..474Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16236 448..474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928092.4951327-CDS-E-fasciculatus_F_contig16236:9..4471622928092.4951327-CDS-E-fasciculatus_F_contig16236:9..447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16236 10..447 +
1695995817.9647608-CDS-E-fasciculatus_F_contig16236:9..4471695995817.9647608-CDS-E-fasciculatus_F_contig16236:9..447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16236 10..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16236.4245.1

>prot_E-fasciculatus_F_contig16236.4245.1 ID=prot_E-fasciculatus_F_contig16236.4245.1|Name=mRNA_E-fasciculatus_F_contig16236.4245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=146bp
MFTQKNSVRHGEGFFFQKKKLTTTTTTTTTTTSSGGSSSSLLGEAGSTVT
NKNAARRCMLRAPPERQLQKHPLKASYTPTPRSQGGENKPMEKWPCTRKK
EREMPRGGQCPGGGGGGTTNKFCRRERKSEKSNEKNNLPRHSHSI*
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mRNA from alignment at E-fasciculatus_F_contig16236:5..474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16236.4245.1 ID=mRNA_E-fasciculatus_F_contig16236.4245.1|Name=mRNA_E-fasciculatus_F_contig16236.4245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=470bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16236:5..474+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCATATGTTTACACAAAAAAACTCTGTACGGCACGGCGAGGGCTTCTTC
TTTCAAAAAAAGAAATTGACGACTACCACCACAACAACAACAACAACAAC
TAGCAGCGGAGGCAGCAGCAGCAGTCTTCTCGGGGAAGCCGGTTCGACCG
TAACAAACAAAAACGCCGCCCGGCGGTGCATGCTGCGTGCACCCCCAGAA
AGACAACTCCAAAAACATCCTCTTAAGGCTAGCTATACACCCACACCACG
TTCCCAAGGTGGTGAAAACAAACCCATGGAAAAATGGCCGTGCACCAGAA
AGAAAGAGAGAGAGATGCCCCGGGGAGGACAGTGCCCCGGGGGGGGAGGG
GGGGGCACAACGAACAAATTTTGTCGACGCGAGAGAAAAAGCGAAAAAAG
TAACGAAAAAAATAATTTACCACGGCACAGCCACAGCATCTAACCCCCCC
CCCCCCCCCCCCCCAGGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16236:5..474+

>mRNA_E-fasciculatus_F_contig16236.4245.1 ID=mRNA_E-fasciculatus_F_contig16236.4245.1|Name=mRNA_E-fasciculatus_F_contig16236.4245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16236:5..474+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTTACACAAAAAAACTCTGTACGGCACGGCGAGGGCTTCTTCTTTCA
AAAAAAGAAATTGACGACTACCACCACAACAACAACAACAACAACTAGCA
GCGGAGGCAGCAGCAGCAGTCTTCTCGGGGAAGCCGGTTCGACCGTAACA
AACAAAAACGCCGCCCGGCGGTGCATGCTGCGTGCACCCCCAGAAAGACA
ACTCCAAAAACATCCTCTTAAGGCTAGCTATACACCCACACCACGTTCCC
AAGGTGGTGAAAACAAACCCATGGAAAAATGGCCGTGCACCAGAAAGAAA
GAGAGAGAGATGCCCCGGGGAGGACAGTGCCCCGGGGGGGGAGGGGGGGG
CACAACGAACAAATTTTGTCGACGCGAGAGAAAAAGCGAAAAAAGTAACG
AAAAAAATAATTTACCACGGCACAGCCACAGCATCTAAATGTTTACACAA
AAAAACTCTGTACGGCACGGCGAGGGCTTCTTCTTTCAAAAAAAGAAATT
GACGACTACCACCACAACAACAACAACAACAACTAGCAGCGGAGGCAGCA
GCAGCAGTCTTCTCGGGGAAGCCGGTTCGACCGTAACAAACAAAAACGCC
GCCCGGCGGTGCATGCTGCGTGCACCCCCAGAAAGACAACTCCAAAAACA
TCCTCTTAAGGCTAGCTATACACCCACACCACGTTCCCAAGGTGGTGAAA
ACAAACCCATGGAAAAATGGCCGTGCACCAGAAAGAAAGAGAGAGAGATG
CCCCGGGGAGGACAGTGCCCCGGGGGGGGAGGGGGGGGCACAACGAACAA
ATTTTGTCGACGCGAGAGAAAAAGCGAAAAAAGTAACGAAAAAAATAATT
TACCACGGCACAGCCACAGCATCTAA
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