mRNA_E-fasciculatus_F_contig16231.4243.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16231.4243.1
Unique NamemRNA_E-fasciculatus_F_contig16231.4243.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16231.4243.1 vs. uniprot
Match: A0A6H5JB41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB41_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.570e-83
Identity = 131/169 (77.51%), Postives = 138/169 (81.66%), Query Frame = 1 
Query:    1 KQRSTLLPRAVWVLLFNQGGPGSFSSSEPQRGLYCLWSKGTNSALAFEERDGALRYAFKLKEKGLGIPGPTRVSMTDLQRFCLDHSFGIWMIPANVVPEAPRKTKKDLGFDPLNLASSSHGRRGAEGWAHGESHLASSSKEGGEEEGSVLTPEDIRKWRAEFERLYAQE 507
            + R TLLPRAVWVLLF+QG     SSSEPQRGLYCLWSKGTNSALAFEER+GALRYAFKLKEKGLGIP PTRVSMTDLQRFCLDHSFGI MIPA+VVPEAPRKTKKDLGFDPLNL SS HGRR A                 GE+ G VLTP+DIRKWRA+FERLYAQE
Sbjct:  115 RARPTLLPRAVWVLLFSQGSGSFGSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPTPTRVSMTDLQRFCLDHSFGIRMIPADVVPEAPRKTKKDLGFDPLNLTSSPHGRRDA-----------------GEDAGPVLTPDDIRKWRAKFERLYAQE 266
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BLAST of mRNA_E-fasciculatus_F_contig16231.4243.1 vs. uniprot
Match: D8LLX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX3_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 6.660e-38
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 KQRSTLLPRAVWVLLFNQGGPGSFSSSEPQRGLYCLWSKGTNSALAFEERDGALRYAFKLKEKGLGIPGPTRVSMTDLQ 237
            + RSTLLPRAVWVL+FNQG     SSSEPQRGLYCLWSKGTNSALAFEER+GALRYAFKLKEKGLGIP PTRVSMT  +
Sbjct:   67 RARSTLLPRAVWVLIFNQGSGSFSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPRPTRVSMTSFE 145
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16231.4243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB41_9PHAE1.570e-8377.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX3_ECTSI6.660e-3883.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16231contigE-fasciculatus_F_contig16231:6..1000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF3110
Ec32 orthologEc-14_002010.1
Exons2
Model size510
Cds size510
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928092.2345774-CDS-E-fasciculatus_F_contig16231:5..2331622928092.2345774-CDS-E-fasciculatus_F_contig16231:5..233Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16231 6..233 +
1695995817.8731334-CDS-E-fasciculatus_F_contig16231:5..2331695995817.8731334-CDS-E-fasciculatus_F_contig16231:5..233Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16231 6..233 +
1622928092.251171-CDS-E-fasciculatus_F_contig16231:718..10001622928092.251171-CDS-E-fasciculatus_F_contig16231:718..1000Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16231 719..1000 +
1695995817.8830216-CDS-E-fasciculatus_F_contig16231:718..10001695995817.8830216-CDS-E-fasciculatus_F_contig16231:718..1000Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16231 719..1000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16231.4243.1prot_E-fasciculatus_F_contig16231.4243.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16231 6..1000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16231.4243.1

>prot_E-fasciculatus_F_contig16231.4243.1 ID=prot_E-fasciculatus_F_contig16231.4243.1|Name=mRNA_E-fasciculatus_F_contig16231.4243.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=170bp
KQRSTLLPRAVWVLLFNQGGPGSFSSSEPQRGLYCLWSKGTNSALAFEER
DGALRYAFKLKEKGLGIPGPTRVSMTDLQRFCLDHSFGIWMIPANVVPEA
PRKTKKDLGFDPLNLASSSHGRRGAEGWAHGESHLASSSKEGGEEEGSVL
TPEDIRKWRAEFERLYAQE*
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mRNA from alignment at E-fasciculatus_F_contig16231:6..1000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16231.4243.1 ID=mRNA_E-fasciculatus_F_contig16231.4243.1|Name=mRNA_E-fasciculatus_F_contig16231.4243.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=995bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16231:6..1000+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAACAGCGCTCCACCCTACTACCGCGCGCGGTTTGGGTCCTTCTTTTCAA
CCAAGGAGGCCCTGGGTCCTTCAGCAGCAGCGAGCCACAGAGAGGGCTGT
ATTGCCTGTGGTCCAAGGGCACCAACTCTGCCTTGGCGTTCGAAGAGCGG
GACGGGGCGCTGCGCTACGCCTTCAAGCTTAAGGAGAAGGGACTGGGCAT
CCCGGGACCAACGCGCGTCTCAATGACGGTGAGCAGACGTATTATGCGCG
GCACAAAAACATGGGTTTGTTGGTGTTCACCAGTCTTTTTTTTTCGAGTC
GTGCGAAAACGACAATGCGGGAGCTGGGTACTTGGTCAACTCGGATGAAA
TCGTCCGCAATTGACTTTTCTTGCGTGTATGCGATAATAACCAGGCAGGA
ACATGGTAAGACGGGGTTGGGGGGCAGTGATTTTTTATTTTGGTTTTATC
TGACAAGTCAACACGCCTTCTTCTCTTCACGTTCACAACAACAACAACGA
CGGAAAACGTGTTGAAAGCGCACTGAGCCCAAGTCTCCGTCACTATTGTC
TTGATAGTCAATAACCAACCCCCGTGTTTGTATTCTCCCGCTGCTATTTA
GTTTTTTTCTCCGTGACTCTGCTGGCCCTCTCTCTCTCCCTCCCTGCGAA
TGACATGGCCTTTGGTACTCATCTCTGCCTCAATTGTTGTTGGCTTGATC
CACACCTTGGCAGGACCTCCAACGCTTCTGCCTGGATCACAGCTTCGGCA
TCTGGATGATCCCCGCCAACGTCGTTCCCGAAGCCCCCCGGAAGACCAAG
AAGGATCTGGGCTTCGACCCTTTGAACTTGGCGTCATCGTCTCACGGACG
ACGCGGCGCGGAGGGTTGGGCGCACGGGGAGAGCCACCTTGCTTCTAGCT
CGAAGGAGGGGGGGGAGGAGGAGGGATCTGTGCTGACGCCGGAGGACATT
CGTAAGTGGCGGGCTGAGTTCGAGCGGCTGTACGCGCAGGAATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16231:6..1000+

>mRNA_E-fasciculatus_F_contig16231.4243.1 ID=mRNA_E-fasciculatus_F_contig16231.4243.1|Name=mRNA_E-fasciculatus_F_contig16231.4243.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16231:6..1000+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAACAGCGCTCCACCCTACTACCGCGCGCGGTTTGGGTCCTTCTTTTCAA
CCAAGGAGGCCCTGGGTCCTTCAGCAGCAGCGAGCCACAGAGAGGGCTGT
ATTGCCTGTGGTCCAAGGGCACCAACTCTGCCTTGGCGTTCGAAGAGCGG
GACGGGGCGCTGCGCTACGCCTTCAAGCTTAAGGAGAAGGGACTGGGCAT
CCCGGGACCAACGCGCGTCTCAATGACGAAACAGCGCTCCACCCTACTAC
CGCGCGCGGTTTGGGTCCTTCTTTTCAACCAAGGAGGCCCTGGGTCCTTC
AGCAGCAGCGAGCCACAGAGAGGGCTGTATTGCCTGTGGTCCAAGGGCAC
CAACTCTGCCTTGGCGTTCGAAGAGCGGGACGGGGCGCTGCGCTACGCCT
TCAAGCTTAAGGAGAAGGGACTGGGCATCCCGGGACCAACGCGCGTCTCA
ATGACGGACCTCCAACGCTTCTGCCTGGATCACAGCTTCGGCATCTGGAT
GATCCCCGCCAACGTCGTTCCCGAAGCCCCCCGGAAGACCAAGAAGGATC
TGGGCTTCGACCCTTTGAACTTGGCGTCATCGTCTCACGGACGACGCGGC
GCGGAGGGTTGGGCGCACGGGGAGAGCCACCTTGCTTCTAGCTCGAAGGA
GGGGGGGGAGGAGGAGGGATCTGTGCTGACGCCGGAGGACATTCGTAAGT
GGCGGGCTGAGTTCGAGCGGCTGTACGCGCAGGAATAAGACCTCCAACGC
TTCTGCCTGGATCACAGCTTCGGCATCTGGATGATCCCCGCCAACGTCGT
TCCCGAAGCCCCCCGGAAGACCAAGAAGGATCTGGGCTTCGACCCTTTGA
ACTTGGCGTCATCGTCTCACGGACGACGCGGCGCGGAGGGTTGGGCGCAC
GGGGAGAGCCACCTTGCTTCTAGCTCGAAGGAGGGGGGGGAGGAGGAGGG
ATCTGTGCTGACGCCGGAGGACATTCGTAAGTGGCGGGCTGAGTTCGAGC
GGCTGTACGCGCAGGAATAA
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