mRNA_E-fasciculatus_F_contig16228.4239.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16228.4239.1
Unique NamemRNA_E-fasciculatus_F_contig16228.4239.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16228.4239.1 vs. uniprot
Match: A0A6H5KTK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK8_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 3.900e-62
Identity = 130/162 (80.25%), Postives = 132/162 (81.48%), Query Frame = 1 
Query:   82 MSEVVKAGVLEVTVVQATGVDLLGATSTLSRTARRKPALVARVTVDGTTKSGQPAQRSHHPVWFPAQPLNPGDMTASAXXXXXXXXXXXXXXXXXXXXXX--SINHSTRLFGRAISNGTAHPPEREAVNGSLGLARDLYGGSAGDGNGXXXXXXESGNPRRG 561
            MSEVVKAGVLEVTVVQATGVDLL ATSTLSRTARRKPALVARVTVDGTTKSGQPAQRSHHPVWFPAQPLN GDM AS+              XXXXXXXX  S+NHS RLFGRA SNGTAHPPEREA NG LGLARD Y G AGDG  XXXXX ESGNPR G
Sbjct:    1 MSEVVKAGVLEVTVVQATGVDLLAATSTLSRTARRKPALVARVTVDGTTKSGQPAQRSHHPVWFPAQPLNLGDMNASSSTSRARGGTSGARNXXXXXXXXXXSVNHSARLFGRAFSNGTAHPPEREAANGPLGLARDRYRGGAGDGXXXXXXXSESGNPRHG 162
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BLAST of mRNA_E-fasciculatus_F_contig16228.4239.1 vs. uniprot
Match: D8LU30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU30_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.930e-5
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:   82 MSEVVKAGVLEVTVVQATGVDLLGATSTLSRT 177
            MSEVVKAGVLEVTVVQATGVDLL ATSTLSRT
Sbjct:    1 MSEVVKAGVLEVTVVQATGVDLLVATSTLSRT 32
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16228.4239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTK8_9PHAE3.900e-6280.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU30_ECTSI1.930e-596.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16228contigE-fasciculatus_F_contig16228:508..2554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size641
Cds size639
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16228.4239.1prot_E-fasciculatus_F_contig16228.4239.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16228 508..2554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928090.5326147-CDS-E-fasciculatus_F_contig16228:507..6831622928090.5326147-CDS-E-fasciculatus_F_contig16228:507..683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16228 508..683 +
1695995817.4455485-CDS-E-fasciculatus_F_contig16228:507..6831695995817.4455485-CDS-E-fasciculatus_F_contig16228:507..683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16228 508..683 +
1622928090.5717747-CDS-E-fasciculatus_F_contig16228:1079..14541622928090.5717747-CDS-E-fasciculatus_F_contig16228:1079..1454Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16228 1080..1454 +
1695995817.4555883-CDS-E-fasciculatus_F_contig16228:1079..14541695995817.4555883-CDS-E-fasciculatus_F_contig16228:1079..1454Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16228 1080..1454 +
1622928090.5817742-CDS-E-fasciculatus_F_contig16228:2466..25541622928090.5817742-CDS-E-fasciculatus_F_contig16228:2466..2554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16228 2467..2554 +
1695995817.4668396-CDS-E-fasciculatus_F_contig16228:2466..25541695995817.4668396-CDS-E-fasciculatus_F_contig16228:2466..2554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16228 2467..2554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16228.4239.1

>prot_E-fasciculatus_F_contig16228.4239.1 ID=prot_E-fasciculatus_F_contig16228.4239.1|Name=mRNA_E-fasciculatus_F_contig16228.4239.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=213bp
QEAVDRAPFFSKQSGDSHTLRRDKRGTMSEVVKAGVLEVTVVQATGVDLL
GATSTLSRTARRKPALVARVTVDGTTKSGQPAQRSHHPVWFPAQPLNPGD
MTASASTSRARGGGSGARNGNGRGSSSSINHSTRLFGRAISNGTAHPPER
EAVNGSLGLARDLYGGSAGDGNGDGGEGSESGNPRRGPRPDLYRRCYRRH
PRREHGMLAQRRR
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mRNA from alignment at E-fasciculatus_F_contig16228:508..2554+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16228.4239.1 ID=mRNA_E-fasciculatus_F_contig16228.4239.1|Name=mRNA_E-fasciculatus_F_contig16228.4239.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2047bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16228:508..2554+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAAGCGGTCGACCGAGCGCCGTTTTTTTCCAAACAGTCGGGCGACTC
CCACACACTCAGGAGGGACAAGAGGGGGACGATGAGCGAGGTGGTTAAGG
CCGGCGTGTTGGAGGTAACGGTGGTGCAGGCTACCGGGGTCGACCTTCTT
GGCGCAACGTCCACCCTGTCTCGAACGTGAGTTATGTGCCCAAGGCAGCA
GAAGGAGCACCCCCCCCCCGCCCCCCCGCCCCCAGGCCTCACCAGTTAAC
GCGAGAGGATCCACCCGTGTCGTGCACCATGGCCGCGTTGCTCTGTCTTG
ACTCGGCACTGCACGCCGATAGTTGTCTGCCCTTCTCGCCCTCGCCGTCT
GTAGTATTCGGAATCACGCACCCTATCCGAAAGCAACGAACGTTTGTGGT
GCCCGGCACAGCAATTAACAACGAGCAAGTTCGATCCCCCGCTCGTGCAG
GCGACTGACTACCCATGTGTTAATCCTCCTTACCCCTTGCTCTTTGCTCT
TTCTGCGTCTCCGTCTATCCCCCTTTACCTTCCGCGGTCTGGCACCCCCG
ACAACGGACAACAACTTTTTAGCGCTCGTCGAAAACCCGCCCTCGTGGCA
CGCGTCACCGTAGATGGCACAACAAAATCCGGGCAGCCGGCCCAGCGGAG
CCATCATCCGGTGTGGTTCCCGGCGCAGCCGCTCAACCCCGGCGACATGA
CAGCGTCAGCGTCGACCTCCCGCGCTAGGGGAGGTGGCAGCGGCGCGCGC
AACGGTAACGGCAGAGGCAGCAGCAGCAGCATTAACCACAGCACCCGCTT
GTTCGGGCGCGCAATCAGCAACGGTACCGCCCACCCCCCAGAGAGGGAGG
CAGTCAACGGCTCGCTCGGTCTGGCGAGGGATCTTTACGGTGGTAGTGCA
GGCGATGGTAACGGCGACGGCGGAGAGGGTTCTGAATCCGGCAACCCCGG
CCATGGTCGCGGCGGCGGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCA
GCAGCGGCGGCATCAGCAGCGGCGGCGGCGGCAGCGTTGCTCGCGGACTG
CTGTTCGAGGTGCGCGAGTTCTACGGCCCGACTCGTATCGTCGTGGAATT
GGTATCCGGAGGAGGCGGCGGCGGCAGCGGCGCGGGAAGTGGTACCGTGC
TCGGCGTGTGTGACGCCAGGCTTGCGGAGGCCTTGGTCGGAAGGGGCGGA
GGGTCAGGGTCGTCCTGCAGACAAGAAAGGACCTCTTCTTCGTCTGGGTT
GAAGGGTAAGCCCCGTTTTTGTCCTTGAGTAGTTTGAGCGGCAAATTAGT
GAATTTTGAAGACTACTTGGTGTCTTGTTTGGTGCACAAGACGGAATAGT
TCAGGTTAAAGACTGCATGTTAAATAGCCAGGGATGACAGCCAGGTGCGG
CATGTGACATTGGTTCGTGTCGTGCCTCGTCGTTGCGGTTCGTCTTAGTA
CCGAGTAGCATGCATCGAGTATTTCCCCGGCGGTAGCCTTGTTTCAAACG
CCGTGCTGCCAACAACTGGATATGCCAGGAGTCCGGCGCACAGCAGCAGT
TTTACGGCGTACAAAGCACCAACTTATTGCGGTGGGCGTCTGAAAACCTA
GCTGCTGCTTTTCTGTAGGTGGACTTTTGATTGAAAACCCTCCCCCCCCC
CCTCCCTCTTTGCACGTACAACCATTGGCGAACCCACCTTAAAAGGCACG
GCAGCCGCGGGCGGGCGTCCCACGCAAGCGTCTACCGTTCTTTCTCCGAA
AGAGGAGAAGAATCAATCGCCAACACTGCCTCCAGAGAGACATGAAGACA
ACAGCGGCGGCGGCGGCGGCGGCGGCATCGGTGATGTCGATGCCGCTGAC
CGGCCGCGGCTCGGCCTCGCCCCCGCTCACTCGGCCACCGGCGATGACGG
GGTTGTCATCTCGCCGCAAGAAGCTAGCGCCGACGACGCGGGTACCGGTG
CTGATGCCGCCGCCGCGGTCCCCGGCCCGACCTCTACCGCCGGTGCTACC
GGCGGCACCCCCGAAGAGAGCACGGGATGCTTGCCCAGCGGAGGCGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16228:508..2554+

>mRNA_E-fasciculatus_F_contig16228.4239.1 ID=mRNA_E-fasciculatus_F_contig16228.4239.1|Name=mRNA_E-fasciculatus_F_contig16228.4239.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16228:508..2554+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAAGCGGTCGACCGAGCGCCGTTTTTTTCCAAACAGTCGGGCGACTC
CCACACACTCAGGAGGGACAAGAGGGGGACGATGAGCGAGGTGGTTAAGG
CCGGCGTGTTGGAGGTAACGGTGGTGCAGGCTACCGGGGTCGACCTTCTT
GGCGCAACGTCCACCCTGTCTCGAACCAGGAAGCGGTCGACCGAGCGCCG
TTTTTTTCCAAACAGTCGGGCGACTCCCACACACTCAGGAGGGACAAGAG
GGGGACGATGAGCGAGGTGGTTAAGGCCGGCGTGTTGGAGGTAACGGTGG
TGCAGGCTACCGGGGTCGACCTTCTTGGCGCAACGTCCACCCTGTCTCGA
ACCGCTCGTCGAAAACCCGCCCTCGTGGCACGCGTCACCGTAGATGGCAC
AACAAAATCCGGGCAGCCGGCCCAGCGGAGCCATCATCCGGTGTGGTTCC
CGGCGCAGCCGCTCAACCCCGGCGACATGACAGCGTCAGCGTCGACCTCC
CGCGCTAGGGGAGGTGGCAGCGGCGCGCGCAACGGTAACGGCAGAGGCAG
CAGCAGCAGCATTAACCACAGCACCCGCTTGTTCGGGCGCGCAATCAGCA
ACGGTACCGCCCACCCCCCAGAGAGGGAGGCAGTCAACGGCTCGCTCGGT
CTGGCGAGGGATCTTTACGGTGGTAGTGCAGGCGATGGTAACGGCGACGG
CGGAGAGGGTTCTGAATCCGGCAACCCCGCTCGTCGAAAACCCGCCCTCG
TGGCACGCGTCACCGTAGATGGCACAACAAAATCCGGGCAGCCGGCCCAG
CGGAGCCATCATCCGGTGTGGTTCCCGGCGCAGCCGCTCAACCCCGGCGA
CATGACAGCGTCAGCGTCGACCTCCCGCGCTAGGGGAGGTGGCAGCGGCG
CGCGCAACGGTAACGGCAGAGGCAGCAGCAGCAGCATTAACCACAGCACC
CGCTTGTTCGGGCGCGCAATCAGCAACGGTACCGCCCACCCCCCAGAGAG
GGAGGCAGTCAACGGCTCGCTCGGTCTGGCGAGGGATCTTTACGGTGGTA
GTGCAGGCGATGGTAACGGCGACGGCGGAGAGGGTTCTGAATCCGGCAAC
CCCCGCCGCGGTCCCCGGCCCGACCTCTACCGCCGGTGCTACCGGCGGCA
CCCCCGAAGAGAGCACGGGATGCTTGCCCAGCGGAGGCGTCCGCCGCGGT
CCCCGGCCCGACCTCTACCGCCGGTGCTACCGGCGGCACCCCCGAAGAGA
GCACGGGATGCTTGCCCAGCGGAGGCGT
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