mRNA_E-fasciculatus_F_contig16221.4238.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16221.4238.1
Unique NamemRNA_E-fasciculatus_F_contig16221.4238.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16221.4238.1 vs. uniprot
Match: D7G051_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G051_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 4.860e-132
Identity = 222/247 (89.88%), Postives = 229/247 (92.71%), Query Frame = 1 
Query:   13 GRARGRATAVAFFMSRAAAGRRLRAWVERRRRRLKAARAAEDHRARAGVNPAAARWRRQRRRDQRLRMEAAWSSWRATARERKASRSARREVVAAVESRLRSSAIAAWRDFADVRLRRRGLLAEAAQSRARRLKGEGLRGLKGGALDARTPRDAVWVGDEHWRRRGAAIVVARLRNLAESRRRMVRRAAALCLRVAARAGLTRWRQSARDSRVAREACVKGEAWRREKARRDGVSVLSGRLGRRAEQ 753
            GRARGRA AVAFF+SRA AGR LRAWVERRRRRL+A RAAEDHRARA V+P AARWRRQRRRDQ+LRMEAAWSSWRAT R R+ SRSARR VV AVESRLRS AI AWR FAD RLRRRGLLAEAAQSRARRLKG+GLRGLKGGALDAR PRDAVWVGDEHWRRRGAAIVVARLRNL ESRRRMVRRAAALCLRVAARAGLTRWRQSARDSRVAREACVKGEAWRREKARRDGVS+LSGRLG RAEQ
Sbjct:    6 GRARGRAAAVAFFLSRAVAGRWLRAWVERRRRRLEATRAAEDHRARAAVSPGAARWRRQRRRDQQLRMEAAWSSWRATTRGRRTSRSARRAVVEAVESRLRSGAIGAWRGFADGRLRRRGLLAEAAQSRARRLKGKGLRGLKGGALDARAPRDAVWVGDEHWRRRGAAIVVARLRNLTESRRRMVRRAAALCLRVAARAGLTRWRQSARDSRVAREACVKGEAWRREKARRDGVSMLSGRLGGRAEQ 252
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BLAST of mRNA_E-fasciculatus_F_contig16221.4238.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE)

HSP 1 Score: 388 bits (996), Expect = 2.060e-120
Identity = 224/251 (89.24%), Postives = 231/251 (92.03%), Query Frame = 1 
Query:    7 EAGRARGRATAVAFFMSRAAAGRRLRAWVERRRRRLKAARAAEDHRARAGVNPAAARWRRQRRRDQRLRMEAAWSSWRATARERKASRSARREVVAAVESRLRSSAIAAWRDFADVRLRRRGLLAEAAQSRARRLKGEGLRGLKGGALDARTPRDAVWVGDEHWRRRGAAIVVARLRNLAESRRRMVRRAAALCLRVAARAGLTRWRQSARDSRVAREACVKGEAWRREKARRDGVSVLSGRLGRRAEQNR 759
            EAGRARG ATAVAFFMSRA AGRRLRAWVERRRRRL+A RAAEDHRARA VNP AARWRRQRRRDQ+LRMEAAWSSWR T R RK SRSARR VV AVESRLRSSAI AWRDF D RL RRGLLAEAAQSRARRLK +GLRG+KGGALDAR PRDAVWVGDEHWRRR AAIVVARLRNLAESRRRMVRRAAALCLRVAARAGLTRWRQSARD RVAREACVKGEAWRR+KARRDGVSVLSGRLGRRA+ +R
Sbjct: 2268 EAGRARGCATAVAFFMSRAVAGRRLRAWVERRRRRLEATRAAEDHRARAAVNPGAARWRRQRRRDQQLRMEAAWSSWRETTRGRKMSRSARRAVVEAVESRLRSSAIGAWRDFVDGRLARRGLLAEAAQSRARRLKRKGLRGVKGGALDARAPRDAVWVGDEHWRRRRAAIVVARLRNLAESRRRMVRRAAALCLRVAARAGLTRWRQSARDWRVAREACVKGEAWRRDKARRDGVSVLSGRLGRRAKHDR 2518
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16221.4238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G051_ECTSI4.860e-13289.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMA0_9PHAE2.060e-12089.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16221contigE-fasciculatus_F_contig16221:1668..2712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size762
Cds size762
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928090.4861517-CDS-E-fasciculatus_F_contig16221:1667..22031622928090.4861517-CDS-E-fasciculatus_F_contig16221:1667..2203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16221 1668..2203 +
1695995817.4123173-CDS-E-fasciculatus_F_contig16221:1667..22031695995817.4123173-CDS-E-fasciculatus_F_contig16221:1667..2203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16221 1668..2203 +
1622928090.4979434-CDS-E-fasciculatus_F_contig16221:2486..27121622928090.4979434-CDS-E-fasciculatus_F_contig16221:2486..2712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16221 2487..2712 +
1695995817.4234393-CDS-E-fasciculatus_F_contig16221:2486..27121695995817.4234393-CDS-E-fasciculatus_F_contig16221:2486..2712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16221 2487..2712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16221.4238.1prot_E-fasciculatus_F_contig16221.4238.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16221 1668..2712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16221.4238.1

>prot_E-fasciculatus_F_contig16221.4238.1 ID=prot_E-fasciculatus_F_contig16221.4238.1|Name=mRNA_E-fasciculatus_F_contig16221.4238.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=254bp
AGEAGRARGRATAVAFFMSRAAAGRRLRAWVERRRRRLKAARAAEDHRAR
AGVNPAAARWRRQRRRDQRLRMEAAWSSWRATARERKASRSARREVVAAV
ESRLRSSAIAAWRDFADVRLRRRGLLAEAAQSRARRLKGEGLRGLKGGAL
DARTPRDAVWVGDEHWRRRGAAIVVARLRNLAESRRRMVRRAAALCLRVA
ARAGLTRWRQSARDSRVAREACVKGEAWRREKARRDGVSVLSGRLGRRAE
QNR*
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mRNA from alignment at E-fasciculatus_F_contig16221:1668..2712+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16221.4238.1 ID=mRNA_E-fasciculatus_F_contig16221.4238.1|Name=mRNA_E-fasciculatus_F_contig16221.4238.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1045bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16221:1668..2712+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGGCGAGGCCGGCCGGGCGAGAGGGCGCGCCACCGCCGTCGCGTTCTT
CATGTCCCGGGCGGCGGCGGGGCGGCGGCTCCGGGCTTGGGTGGAGCGGC
GACGGCGGCGGTTGAAAGCCGCGCGGGCGGCGGAAGACCACCGGGCCCGG
GCGGGGGTGAACCCGGCGGCGGCGCGGTGGCGGCGGCAGCGGCGGCGGGA
CCAGCGGCTGCGGATGGAGGCCGCCTGGAGCTCGTGGCGAGCGACGGCGA
GGGAAAGAAAGGCGTCACGATCGGCACGCCGGGAAGTCGTTGCGGCCGTC
GAGAGCCGCCTGCGGAGCAGCGCGATCGCAGCGTGGCGAGACTTCGCGGA
TGTCAGGCTCCGGCGACGAGGCCTGCTGGCCGAAGCGGCGCAGAGCCGGG
CTCGGCGACTGAAGGGGGAAGGGCTCCGGGGCCTGAAGGGCGGCGCCCTC
GACGCGCGCACTCCTCGAGATGCGGTTTGGGTTGGGGACGAGCACTGGAG
ACGACGAGGCGCGGCGATTGTTGTGGCGCGACTGCGGTGGGCAAAAAAGA
CAGCAGTGTGTAGAGAAGCGGGGGAACCGCGAAGCGAAGTTAGGGGAGCA
GTCCTTGATTGATGTTGAGTTAGCATATCTGTCTTTAATTGGTGTTGTGG
CGGATCTGTTATTGATTGATGTTATAGTCCTTCCACACGGGAGTACCAAA
CATTCACACGCGTCCCTTCTCTATGCCCGCGCCACCCCTTTACGTCCACG
AAGTCCACCTTTTGTAATGAAAGTTATGTCGCGTCCCTCCGTCGCCGCCG
CACCCCCGCCACCTGGCAGAAATCTCGCCGAGTCACGACGGCGAATGGTT
CGGCGGGCCGCCGCTCTCTGCCTCCGCGTCGCCGCCCGAGCTGGCCTGAC
CCGCTGGCGCCAGTCCGCGCGAGACTCAAGGGTGGCTCGGGAAGCGTGCG
TCAAGGGAGAGGCCTGGCGGCGGGAGAAAGCGAGGCGAGACGGGGTCTCG
GTGCTGTCCGGTAGACTGGGCCGACGCGCTGAACAGAACCGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16221:1668..2712+

>mRNA_E-fasciculatus_F_contig16221.4238.1 ID=mRNA_E-fasciculatus_F_contig16221.4238.1|Name=mRNA_E-fasciculatus_F_contig16221.4238.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1524bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16221:1668..2712+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGGCGAGGCCGGCCGGGCGAGAGGGCGCGCCACCGCCGTCGCGTTCTT
CATGTCCCGGGCGGCGGCGGGGCGGCGGCTCCGGGCTTGGGTGGAGCGGC
GACGGCGGCGGTTGAAAGCCGCGCGGGCGGCGGAAGACCACCGGGCCCGG
GCGGGGGTGAACCCGGCGGCGGCGCGGTGGCGGCGGCAGCGGCGGCGGGA
CCAGCGGCTGCGGATGGAGGCCGCCTGGAGCTCGTGGCGAGCGACGGCGA
GGGAAAGAAAGGCGTCACGATCGGCACGCCGGGAAGTCGTTGCGGCCGTC
GAGAGCCGCCTGCGGAGCAGCGCGATCGCAGCGTGGCGAGACTTCGCGGA
TGTCAGGCTCCGGCGACGAGGCCTGCTGGCCGAAGCGGCGCAGAGCCGGG
CTCGGCGACTGAAGGGGGAAGGGCTCCGGGGCCTGAAGGGCGGCGCCCTC
GACGCGCGCACTCCTCGAGATGCGGTTTGGGTTGGGGACGAGCACTGGAG
ACGACGAGGCGCGGCGATTGTTGTGGCGCGACTGCGGCCGGCGAGGCCGG
CCGGGCGAGAGGGCGCGCCACCGCCGTCGCGTTCTTCATGTCCCGGGCGG
CGGCGGGGCGGCGGCTCCGGGCTTGGGTGGAGCGGCGACGGCGGCGGTTG
AAAGCCGCGCGGGCGGCGGAAGACCACCGGGCCCGGGCGGGGGTGAACCC
GGCGGCGGCGCGGTGGCGGCGGCAGCGGCGGCGGGACCAGCGGCTGCGGA
TGGAGGCCGCCTGGAGCTCGTGGCGAGCGACGGCGAGGGAAAGAAAGGCG
TCACGATCGGCACGCCGGGAAGTCGTTGCGGCCGTCGAGAGCCGCCTGCG
GAGCAGCGCGATCGCAGCGTGGCGAGACTTCGCGGATGTCAGGCTCCGGC
GACGAGGCCTGCTGGCCGAAGCGGCGCAGAGCCGGGCTCGGCGACTGAAG
GGGGAAGGGCTCCGGGGCCTGAAGGGCGGCGCCCTCGACGCGCGCACTCC
TCGAGATGCGGTTTGGGTTGGGGACGAGCACTGGAGACGACGAGGCGCGG
CGATTGTTGTGGCGCGACTGCGAAATCTCGCCGAGTCACGACGGCGAATG
GTTCGGCGGGCCGCCGCTCTCTGCCTCCGCGTCGCCGCCCGAGCTGGCCT
GACCCGCTGGCGCCAGTCCGCGCGAGACTCAAGGGTGGCTCGGGAAGCGT
GCGTCAAGGGAGAGGCCTGGCGGCGGGAGAAAGCGAGGCGAGACGGGGTC
TCGGTGCTGTCCGGTAGACTGGGCCGACGCGCTGAACAGAACCGGTGAAA
ATCTCGCCGAGTCACGACGGCGAATGGTTCGGCGGGCCGCCGCTCTCTGC
CTCCGCGTCGCCGCCCGAGCTGGCCTGACCCGCTGGCGCCAGTCCGCGCG
AGACTCAAGGGTGGCTCGGGAAGCGTGCGTCAAGGGAGAGGCCTGGCGGC
GGGAGAAAGCGAGGCGAGACGGGGTCTCGGTGCTGTCCGGTAGACTGGGC
CGACGCGCTGAACAGAACCGGTGA
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