mRNA_E-fasciculatus_F_contig1622.4237.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1622.4237.1
Unique NamemRNA_E-fasciculatus_F_contig1622.4237.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1622.4237.1 vs. uniprot
Match: D7G251_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G251_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 4.270e-50
Identity = 93/130 (71.54%), Postives = 104/130 (80.00%), Query Frame = 3 
Query:   18 SPPAEDQATAAQREKKEADDDRTVALFNSVMLTDGLEVLKHLRSSSEKAVAHVIRFAPNNGGALVWYKPGHQQDAKHSRVPLDEIIEVELEAGILWISAGDERVGFETSRPEDADLLYKAICILRHRCHA 407
            SP  EDQAT AQR K+EA +DR VA FNSVML DGL+VLKH R SS+KA + VIRF P+ GGALVW KP  Q  AK SRVPLD I +VELEA I+WISAGDERVGFETS+ EDADL+Y+AICIL  RCHA
Sbjct:   53 SPVVEDQATIAQRAKQEAHNDRIVATFNSVMLADGLKVLKHHRRSSKKAASRVIRFVPDYGGALVWDKPLRQPGAKASRVPLDAITQVELEARIVWISAGDERVGFETSKTEDADLMYQAICILVDRCHA 182
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BLAST of mRNA_E-fasciculatus_F_contig1622.4237.1 vs. uniprot
Match: A0A6H5JPJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ4_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 3.110e-31
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 3 
Query:   60 KKEADDDRTVALFNSVMLTDGLEVLKHLRSSSEKAVAHVIRFAPNN--GGALVWYKPGHQQDAKHSRVPLDEIIEVELEAGILWISAGDERVGFETSRPEDADLLYKAICILRHRCHA 407
            +++  DD  VA+FN VML DGL+VLK LRS  + A + VIRF P+   GG+LVW+KP + Q AK+SRVPLD   +VELEA I+WISA DERVG ETS+ EDA+++Y+AICIL  RC+A
Sbjct:  227 REKVHDDHVVAVFNRVMLADGLKVLKQLRSC-KAACSRVIRFVPDYLFGGSLVWHKPVNPQGAKNSRVPLDVTTQVELEACIVWISASDERVGCETSKLEDAEIMYEAICILVDRCNA 343
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1622.4237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G251_ECTSI4.270e-5071.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JPJ4_9PHAE3.110e-3159.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1622contigE-fasciculatus_F_contig1622:12594..15174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1631
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1622.4237.1prot_E-fasciculatus_F_contig1622.4237.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1622 13815..14250 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928090.3832252-UTR-E-fasciculatus_F_contig1622:12593..138141622928090.3832252-UTR-E-fasciculatus_F_contig1622:12593..13814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1622 12594..13814 -
1695995817.364228-UTR-E-fasciculatus_F_contig1622:12593..138141695995817.364228-UTR-E-fasciculatus_F_contig1622:12593..13814Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1622 12594..13814 -
1622928090.4303737-UTR-E-fasciculatus_F_contig1622:14250..142531622928090.4303737-UTR-E-fasciculatus_F_contig1622:14250..14253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1622 14251..14253 -
1695995817.3925707-UTR-E-fasciculatus_F_contig1622:14250..142531695995817.3925707-UTR-E-fasciculatus_F_contig1622:14250..14253Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1622 14251..14253 -
1622928090.4470134-UTR-E-fasciculatus_F_contig1622:15070..151741622928090.4470134-UTR-E-fasciculatus_F_contig1622:15070..15174Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1622 15071..15174 -
1695995817.4025078-UTR-E-fasciculatus_F_contig1622:15070..151741695995817.4025078-UTR-E-fasciculatus_F_contig1622:15070..15174Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1622 15071..15174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928090.3954885-CDS-E-fasciculatus_F_contig1622:13814..139341622928090.3954885-CDS-E-fasciculatus_F_contig1622:13814..13934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1622 13815..13934 -
1695995817.37276-CDS-E-fasciculatus_F_contig1622:13814..139341695995817.37276-CDS-E-fasciculatus_F_contig1622:13814..13934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1622 13815..13934 -
1622928090.4127626-CDS-E-fasciculatus_F_contig1622:14067..142501622928090.4127626-CDS-E-fasciculatus_F_contig1622:14067..14250Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1622 14068..14250 -
1695995817.3814273-CDS-E-fasciculatus_F_contig1622:14067..142501695995817.3814273-CDS-E-fasciculatus_F_contig1622:14067..14250Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1622 14068..14250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1622.4237.1

>prot_E-fasciculatus_F_contig1622.4237.1 ID=prot_E-fasciculatus_F_contig1622.4237.1|Name=mRNA_E-fasciculatus_F_contig1622.4237.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MLTDGLEVLKHLRSSSEKAVAHVIRFAPNNGGALVWYKPGHQQDAKHSRV
PLDEIIEVELEAGILWISAGDERVGFETSRPEDADLLYKAICILRHRCHA
*
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mRNA from alignment at E-fasciculatus_F_contig1622:12594..15174-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1622.4237.1 ID=mRNA_E-fasciculatus_F_contig1622.4237.1|Name=mRNA_E-fasciculatus_F_contig1622.4237.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2581bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1622:12594..15174- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCGTTGACCCGGGTCTCGCCGCCAGCGGAGGACCAGGCGACGGCCGCC
CAACGCGAAAAGAAAGAGGCGGACGACGACCGCACTGTGGCTTTGTTCAA
CAGCGTGAGTCTCTTCTGGTTACCCAACAGTCCCCTCCGCTCCCCTCACT
TGTCAAGTATATTACCGCTTCAAGGTTGCTTGCGGAAGGTCGGTGTCTTT
ATCGATGCCTCTGCACGATGTCTCAAAATTTGATGGCTCAGCGGCTTTTG
TTTTTCTCCGAGACACATTGGCTTTAAGAAAGACACAAGATGTAGCACCA
CCCGGGGCCTTTGTTTTGTTTTGCCATATTCTGGCTGCACTTTTGGCCGG
ACCCCTTCAGAATCATCCCGCAACCATGGTAAAGGGCGTCTTACACACTT
GTTGCAATCGATCTCAGGCAAGTTGTTGGTCCCTCCAGAACAAAGGGTGA
ACAACGGTACGTTGGTGCCACCATACCGCTGATATTGCTGCAGCTCACAG
CAGTGCCAAACAATGTCGGACGCATGAGCAGGCAGAGAAACCCTTTTGCC
TGCAACGGAAATGCTCACGAGCAGACAATTTTCACCAGCAGGCAATCAAG
AAGTGGTTGCTCGTTGGTGTTGTCTAATTTCTATGTGGAACTATGTGGAG
GAGTTGGTTCCGGGGTCGCGGACGACGACACAAACAATGCCCAAACTCCT
GCATTCATGACCAAATTGCACGTGCCTACAGGGATATTCGCGTCTGAAAC
GAGTGACTTGATCCTCAGGCTAGGCGTGGGGTCGGCCCTTTGGGTGCCAA
AGCAATAGTCTATCCCCGCATCTCCTGAAAACATCGTTTGTTGTTGCATA
CTCTGGGCACTCTCTATTCCCTCTCACCCTCCTGCTACAAGTAACGAAAC
ACGTGCCACCCGGTTGTGAAGGTCATGCTCACGGACGGCCTCGAGGTCCT
GAAGCACCTACGCAGCAGCTCCGAGAAGGCGGTTGCCCACGTGATCCGCT
TCGCACCCAACAACGGAGGGGCTCTGGTGTGGTACAAGCCTGGCCACCAG
CAAGACGCAAAGCATAGCAGGGTCCCACTCGACGAGATCATCGAGGTGGA
GCTGGAGGTGAGGTTAATAGATATCACACGCCCCTTCCGCAGTGACGGCA
CACGTTGGAACCTCCGACGAATGCCTCCAATTTGAACGATTTGGTCCCTG
CCTCCCCTAACTCGGCGGGCTTCTCGTGTTGGTCGACCAGGCGGGCATCT
TGTGGATCTCGGCGGGTGACGAGCGTGTCGGGTTTGAGACATCCAGACCA
GAGGACGCTGATTTATTGTACAAGGCGATCTGTATCCTTCGCCACAGGTG
CCACGCATGAGCCCCAAAAGGTATCCGGGGCGCGTATTCGAGTGAAATCC
TGCGCGGTCAAGGCGGCGCTGCTAAACACAGCCGTGCTATTCGTGTGTAG
CGACGAGCACGGCAGGGAAGCGTTCACGAGGCATGGGTGTATCGAGGCAT
GAGTGTATGCCCCGGTGGACTATGTGACCCGCGACGTTTTCCTGTGGCCT
CAAATGCAGCGTGAGCTCGATGGGTCATTGAACGTATTTTTTGGCAGGGT
CGTGCTCGAGGTCATGCGTAGCCTCGGCTTGGACGAGGGGGCGTGCAAGC
CGTAACACCGTGCCGCCGCGTGCCAACAGTCGACACGCCACGCCACATAT
GATCGCACGCGCCGGTGCCCTTCGCGGCTCGATAGCATATCATCGTGCGC
TTGGAAGCACATGGATAGTGCAAGCGGCCTCTTTTAGGTAGATTGGTTTT
TCGTTTTTCGTATGCTGTCTTGTAACAGGAAGGACCTTTACAATAGATCG
TCCTGGAGCTGGCTCAGTAAGTCCAGAGCGCAAGTAAGAACATGTGATTA
AGCTTGTCCGATAACCTCGACTCTGTCGGAGGGGCACCCGGTCAATCGTA
GTCTTCGTTCCTTCGCGGTAAGGATTCTCCCGCTCAACTCCTGGGCCCTC
TCACGTCGGTTTATCCCTGCACTTTTCGTCTGCGCTCTCAAGTGTGTACC
GCAGTTTGTGTCCTGCTGGAGGGCTCTTGCCAGTTCGTAAGCTTCCGAGG
GAGGCAGTGGGCAAAGGATCAAATCCGATCGCTCCCTTGCAGGGATTTCA
AGCACAACACTGGGAAGATAGACAGCGGGTTTTCAAGTTTTTCTGTGTTG
CTTTGCTCTATGCATAGGACACGTAGATTTTATTCTTTCCCATGGTGTGG
GGAATGACATTATTGTCCGTGCACCCCCGGTGTTGAATACACCGAGGCCG
TAGGCATGCACGGTTAGAATCATGCGGTTTCTATTTCTTAATTGGTGATC
TTGGATCCGTTTAATTTGTTTTCGTTTTATTGTCGGGTGGCAGCGGGGGC
GATACGCCGGACACTATTCGACGTCATCCAAAGTTGATGCAAGTTGTCAT
CATTGGCGGGTCCAACTTCTGTCCTCACGAATCAAAGCTGGTATGTCACA
GTCCAGTATTGCCATCACAATTGACCAACGTCGGTACAGTTTCGTCAATG
CAGATCGAACTTGGGTGACAGTATAGCGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1622:12594..15174-

>mRNA_E-fasciculatus_F_contig1622.4237.1 ID=mRNA_E-fasciculatus_F_contig1622.4237.1|Name=mRNA_E-fasciculatus_F_contig1622.4237.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1622:12594..15174- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCACGGACGGCCTCGAGGTCCTGAAGCACCTACGCAGCAGCTCCGA
GAAGGCGGTTGCCCACGTGATCCGCTTCGCACCCAACAACGGAGGGGCTC
TGGTGTGGTACAAGCCTGGCCACCAGCAAGACGCAAAGCATAGCAGGGTC
CCACTCGACGAGATCATCGAGGTGGAGCTGGAGATGCTCACGGACGGCCT
CGAGGTCCTGAAGCACCTACGCAGCAGCTCCGAGAAGGCGGTTGCCCACG
TGATCCGCTTCGCACCCAACAACGGAGGGGCTCTGGTGTGGTACAAGCCT
GGCCACCAGCAAGACGCAAAGCATAGCAGGGTCCCACTCGACGAGATCAT
CGAGGTGGAGCTGGAGGCGGGCATCTTGTGGATCTCGGCGGGTGACGAGC
GTGTCGGGTTTGAGACATCCAGACCAGAGGACGCTGATTTATTGTACAAG
GCGATCTGTATCCTTCGCCACAGGTGCCACGCATGAGCGGGCATCTTGTG
GATCTCGGCGGGTGACGAGCGTGTCGGGTTTGAGACATCCAGACCAGAGG
ACGCTGATTTATTGTACAAGGCGATCTGTATCCTTCGCCACAGGTGCCAC
GCATGA
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