mRNA_E-fasciculatus_F_contig1622.4236.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1622.4236.1
Unique NamemRNA_E-fasciculatus_F_contig1622.4236.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1622.4236.1 vs. uniprot
Match: D7FKP7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKP7_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.700e-69
Identity = 119/138 (86.23%), Postives = 124/138 (89.86%), Query Frame = 1 
Query:    1 MDVMHQRP-QADWMPAGRPPSGRRRSLGNRRCILRGEGLCGTASGVDDMDTRRALARTEEAALKDLVAMFKVESEEELPVSFDVHRLLELKESERRAFVRNMLDAYSPCTDAAPMSIDSFIDKYLEQTRILEALLAAG 411
            MDVMHQR  + DWMPAGRPPSGRRRSLGNRRCILRGEGLC T SG  DMDTR ALARTEEAALKDLVA+FKVESEE LPVSFDVHRLLEL+E ERR+FV+NML AYS CTDA PMSIDSFIDKYLEQTRIL ALLAAG
Sbjct:    1 MDVMHQRAREEDWMPAGRPPSGRRRSLGNRRCILRGEGLCRTESGEHDMDTRGALARTEEAALKDLVAIFKVESEEHLPVSFDVHRLLELEEGERRSFVKNMLQAYSSCTDATPMSIDSFIDKYLEQTRILAALLAAG 138
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1622.4236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKP7_ECTSI1.700e-6986.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1622contigE-fasciculatus_F_contig1622:9348..11967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001660.1
Exons3
Model size1531
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1622.4236.1prot_E-fasciculatus_F_contig1622.4236.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1622 9348..10853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928090.3001428-CDS-E-fasciculatus_F_contig1622:9347..94491622928090.3001428-CDS-E-fasciculatus_F_contig1622:9347..9449Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1622 9348..9449 +
1695995817.3246248-CDS-E-fasciculatus_F_contig1622:9347..94491695995817.3246248-CDS-E-fasciculatus_F_contig1622:9347..9449Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1622 9348..9449 +
1622928090.3155668-CDS-E-fasciculatus_F_contig1622:10014..101221622928090.3155668-CDS-E-fasciculatus_F_contig1622:10014..10122Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1622 10015..10122 +
1695995817.3329992-CDS-E-fasciculatus_F_contig1622:10014..101221695995817.3329992-CDS-E-fasciculatus_F_contig1622:10014..10122Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1622 10015..10122 +
1622928090.331648-CDS-E-fasciculatus_F_contig1622:10646..108531622928090.331648-CDS-E-fasciculatus_F_contig1622:10646..10853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1622 10647..10853 +
1695995817.3413079-CDS-E-fasciculatus_F_contig1622:10646..108531695995817.3413079-CDS-E-fasciculatus_F_contig1622:10646..10853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1622 10647..10853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928090.3459234-UTR-E-fasciculatus_F_contig1622:10853..119671622928090.3459234-UTR-E-fasciculatus_F_contig1622:10853..11967Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1622 10854..11967 +
1695995817.35244-UTR-E-fasciculatus_F_contig1622:10853..119671695995817.35244-UTR-E-fasciculatus_F_contig1622:10853..11967Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1622 10854..11967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1622.4236.1

>prot_E-fasciculatus_F_contig1622.4236.1 ID=prot_E-fasciculatus_F_contig1622.4236.1|Name=mRNA_E-fasciculatus_F_contig1622.4236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=139bp
MDVMHQRPQADWMPAGRPPSGRRRSLGNRRCILRGEGLCGTASGVDDMDT
RRALARTEEAALKDLVAMFKVESEEELPVSFDVHRLLELKESERRAFVRN
MLDAYSPCTDAAPMSIDSFIDKYLEQTRILEALLAAGF*
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mRNA from alignment at E-fasciculatus_F_contig1622:9348..11967+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1622.4236.1 ID=mRNA_E-fasciculatus_F_contig1622.4236.1|Name=mRNA_E-fasciculatus_F_contig1622.4236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2620bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1622:9348..11967+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGTGATGCACCAAAGGCCGCAAGCAGACTGGATGCCGGCCGGAAG
GCCACCGAGCGGGCGACGGCGCAGCTTGGGGAACCGGAGGTGCATCCTAC
GAGTGAGTCAACAATTCGTCAATTTTGGATCGATCTCCAGTGCCGTCTTG
CTCGTTATAACGCCTATTTTCTATTTTCAGCAAGGCCTAGACTATTGTAC
AGGGTCTTCACCATTTCTAAACGATTGACCATGATGCATGATGCGTTTTG
TGCGTGTGTGTTGGCCTCGATAATGCGCATGTAGGATTTAATTTACCTAC
CGGTATGTATGGAGTGTGGTGCCGGCGGCTGAGCCCAATATTTCTGACGC
CGTTTTCCTGATTTTTCCTGAAATGTGGCCCTCGATTTTTCTTGTGACTC
TACATTAGCTGAGAGAGCGGGCCGACATTGCTGCTGTTTTTGCAGTGGAC
AGCAGCGGCGTCGTGGTAAACTAGCGAGTTGTCGGCAAACATGTCGTAGC
TTTAGACTATTTATTTTGTATTGGTGTAGGATGTTACAGCAGTTAGAGTA
CCTTGCTTGCGCGCGTGTCGCGTACTTGAAGTAACCCTCAGATTGGTGTG
CACTGGCGATTTCTAACCATGAACATTTTGACATGGTTGTTGGTTAAATG
TTGCATTTGGACTGAAGGGCGAGGGTTTATGCGGAACGGCATCCGGCGTG
GACGACATGGATACACGGAGAGCGCTTGCAAGGACCGAAGAGGCGGCCTT
GAAGGACCTCGTCGCGATGTTCAAGGTAATATTCTACGACGACTGCATTT
GTTGGCTCGCCCTCTCTTGCTTTGAGTTGCTGCCTGCAGATCTTTCATTG
ATATGTGAGTGTACCTCTTTAGGGTAAGTTAGCCTGTGACCCACGGGAAT
CGACCGCGTCAAGTGTTAGATCAGTACGGACAGGGGAAGTACTGGATAAA
GAGAGATCGGAACGGTTGTTAATGTGAAGACAACAACACCATCTGTCGCG
TTGACACTTCTTCTGCGGCATCGTCGGTCATCTCGCTTACCAAGCAAGGG
TTTCCCACTAGACAAGAGCGTGAGTTTGCACAATGCAAACGTGGGGGACA
ATTTGCAACGAGCTTCACTTCGTGGAGGAAACAACGAGTACGACGGAGTC
CCACAAACAAAGAATATACAGGGAGTCCCAACCCACTACAAGTATCCTGA
CAGAATTTGTGCTGGTATCGCGAGCTACGTATGTAACAATACTGTACCCC
CGCAACACTCACATCCACACTCTGCGTTGCTCCACTCCACACTCCACAGG
TAGAGAGCGAGGAGGAACTCCCGGTATCGTTCGACGTGCACCGGCTTCTG
GAACTAAAGGAAAGTGAGCGACGGGCTTTCGTGAGGAACATGCTCGACGC
CTATTCGCCTTGCACCGATGCAGCCCCGATGTCTATCGACAGCTTCATCG
ACAAGTACCTGGAGCAAACGAGAATTCTTGAGGCGCTCTTGGCGGCCGGA
TTCTGAGTCACACGACCGACAACCGTTTTTCGCGACCGAACTCGGTTCAA
ACACCTGGAGTGTGATTGCCATGTATTTATTCAAACGATGTTGATATGGG
TGCGCCGACGTGCCACCGGGGGTGATTGCCGCGGGCCGTGCGTGCTTGTC
CTTGCGACAGCATCTGTTGGACGCCGAGGTCCTGATTGCTGTCTGTATAT
CGAAGTTGGTGTTGGATCGCTGTTTGGGGTTTCCACACAGCAGCCCCACC
ATTGTGTTTCAATGTATTTTAGTCGGCATTCACAACTTTATCGTTATGCA
TGTATGTTGGGCCGCCCGTAGGCGATAGCTTCAAGCACTTGAGCGCGACG
CCCCCTCCTGTTCCGGCAACCTTGTAGCATGTTGAGGAACCTTGTTACGC
GTGTGTTTTTCTCACCGCCGAGTGCGTCTTTGGCTGTCTTGTCTGGCGCC
CGCATTTTGCAATGGTGAACGTATGATGACTGGTGCCTGTAAGTTTGCTG
GGCTTTGTGTTTTGTCGATCGATAGTTGTACCCCGCGTTCACCCAGTGCA
ATAGCTCATGTCCAACGAGGGCGGTGAAAATAGGTAGGGCGGGTATTTAT
GTATGTATTCAGCGTTGTTCGGGGGTGATATTAACCGCAAAAGTAAGTCA
TCATATCATGTGTATGTAGTTTGGCTGTCTGTGCTTCTAATTCTCCTGTG
GACGCTCTTCTGTATTGGCGTGAAGTACACGGCATGTCTGGTGTAATATG
AGATCTGGGCCTGTTGAAGTGTTGGCCCGTAGATAAGAGGCCCAAGTACG
GGCACGCGAGGAAACGCCTGTCCGTTGTACTCAGCTCCGCCATCTTCGTT
GGTAGGTGTTGTTGTCGTTCCTGTTGTCTTCACATCGACAAAAAAAATGC
AGGTGTCCGCTCAGTACCTTCTGACACCCGCACCGGCCCGACCGACACGG
ATGCCTTCCGTAGTCACTGGTACATGAGTCAACTACCCGAAAGGGGCGCA
CACTTCGAACAAATTGAAGAGAAAGAAAGGGTCCCCAATAAAAAAGCATC
ACAAATTAATTTGTTTTTGCTTCGATTAATGTTAATGCGACAATCATGGA
ATTGAATGTTAATGCGACAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1622:9348..11967+

>mRNA_E-fasciculatus_F_contig1622.4236.1 ID=mRNA_E-fasciculatus_F_contig1622.4236.1|Name=mRNA_E-fasciculatus_F_contig1622.4236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1622:9348..11967+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACGTGATGCACCAAAGGCCGCAAGCAGACTGGATGCCGGCCGGAAG
GCCACCGAGCGGGCGACGGCGCAGCTTGGGGAACCGGAGGTGCATCCTAC
GAATGGACGTGATGCACCAAAGGCCGCAAGCAGACTGGATGCCGGCCGGA
AGGCCACCGAGCGGGCGACGGCGCAGCTTGGGGAACCGGAGGTGCATCCT
ACGAGGCGAGGGTTTATGCGGAACGGCATCCGGCGTGGACGACATGGATA
CACGGAGAGCGCTTGCAAGGACCGAAGAGGCGGCCTTGAAGGACCTCGTC
GCGATGTTCAAGGGCGAGGGTTTATGCGGAACGGCATCCGGCGTGGACGA
CATGGATACACGGAGAGCGCTTGCAAGGACCGAAGAGGCGGCCTTGAAGG
ACCTCGTCGCGATGTTCAAGGTAGAGAGCGAGGAGGAACTCCCGGTATCG
TTCGACGTGCACCGGCTTCTGGAACTAAAGGAAAGTGAGCGACGGGCTTT
CGTGAGGAACATGCTCGACGCCTATTCGCCTTGCACCGATGCAGCCCCGA
TGTCTATCGACAGCTTCATCGACAAGTACCTGGAGCAAACGAGAATTCTT
GAGGCGCTCTTGGCGGCCGGATTCTGAGTAGAGAGCGAGGAGGAACTCCC
GGTATCGTTCGACGTGCACCGGCTTCTGGAACTAAAGGAAAGTGAGCGAC
GGGCTTTCGTGAGGAACATGCTCGACGCCTATTCGCCTTGCACCGATGCA
GCCCCGATGTCTATCGACAGCTTCATCGACAAGTACCTGGAGCAAACGAG
AATTCTTGAGGCGCTCTTGGCGGCCGGATTCTGA
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