mRNA_E-fasciculatus_F_contig16211.4231.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16211.4231.1
Unique NamemRNA_E-fasciculatus_F_contig16211.4231.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16211.4231.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 1.520e-75
Identity = 156/204 (76.47%), Postives = 159/204 (77.94%), Query Frame = -1 
Query:    1 MRYRVSTVVEEXXXXXXXXXXXXGKSRTSSDGDVAVVTPTQDPATAAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSRDLRAARSRLYATRARVARLSADTCRDSLRASEAADDRACAALEASTAHARRESETGGPLPLRIDAASNGXXXXXXXDLENGSGGSGSCSRGGGIFQGLETAVVEPKVSTLIGKMAEL 612
            MRYRVSTVV+E            GK   SS G VAVV P QD AT AYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFS DLRAARSRLYATRARVARLSADTCRD+LR SEAADDRACA LEASTAHARRESETGGPLPLRID A+  XXXXXXX                GIFQGLET VVEPKVS LIGKMAEL
Sbjct:    1 MRYRVSTVVDETTKKSLA-----GKKSGSSAG-VAVVAPAQDAATTAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRACAVLEASTAHARRESETGGPLPLRIDDAAXXXXXXXXXXXXXXXX---XXXXXXGIFQGLETGVVEPKVSALIGKMAEL 195
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16211.4231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI1.520e-7576.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16211contigE-fasciculatus_F_contig16211:4..744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size743
Cds size741
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928084.279989-CDS-E-fasciculatus_F_contig16211:3..7441622928084.279989-CDS-E-fasciculatus_F_contig16211:3..744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16211 4..744 +
1695995817.0963285-CDS-E-fasciculatus_F_contig16211:3..7441695995817.0963285-CDS-E-fasciculatus_F_contig16211:3..744Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16211 4..744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16211.4231.1prot_E-fasciculatus_F_contig16211.4231.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16211 4..744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16211.4231.1

>prot_E-fasciculatus_F_contig16211.4231.1 ID=prot_E-fasciculatus_F_contig16211.4231.1|Name=mRNA_E-fasciculatus_F_contig16211.4231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=247bp
QLRHLPDERRDLGLHDRCLQALEYTTPPAAAAAAAAAVLEIFVIAAATAV
AGGIDPERQGSPRLALPARVRGAGLQGGAGAVVGRLRGAQGVPAGVRRQA
RDARARGVEPAPRGPEVAAELEDLPDELVLLPGLAGVLHLAEVSHLVGNG
RLEGTEVGRRCRVLRRRDDGDVAVAACPALSGGGGGQSLLLCRLFHHGAD
PVPHLLQPLLGGPNQRLLLRHTSSSSGGGGGISGSGSSSSSRTGGSV
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mRNA from alignment at E-fasciculatus_F_contig16211:4..744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16211.4231.1 ID=mRNA_E-fasciculatus_F_contig16211.4231.1|Name=mRNA_E-fasciculatus_F_contig16211.4231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=741bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16211:4..744+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCTCCGCCATCTTCCCGATGAGCGTCGAGACCTTGGGCTCCACGACCG
CTGTCTCCAGGCCCTGGAATATACCACCCCCCCTGCTGCAGCTGCCGCTG
CCGCCGCTGCCGTTCTCGAGATCTTCGTCATCGCTGCCGCCACCGCCGTT
GCTGGCGGCATCGATCCGGAGCGGCAGGGGTCCCCCCGTCTCGCTCTCCC
TGCGCGCGTGCGCGGTGCTGGCCTCCAGGGCGGCGCAGGCGCGGTCGTCG
GCCGCCTCCGAGGCGCGCAGGGAGTCCCTGCAGGTGTCCGCCGACAGGCG
CGCGACGCGCGCGCGCGTGGCGTAGAGCCTGCTCCTCGCGGCCCTGAGGT
CGCGGCTGAACTGGAAGATCTCCCCGACGAGCTCGTCCTCCTCCCGGGAC
TCGCGGGCGTCCTGCACCTCGCAGAGGTCTCGCACCTTGTCGGCAACGGC
CGCCTGGAAGGCACGGAGGTAGGCCGCCGTTGCCGGGTCCTGCGTCGGCG
TGACGACGGCGACGTCGCCGTCGCTGCTTGTCCTGCTCTTTCCGGCGGCG
GCGGCGGCCAGAGTCTTCTTCTTTGTCGTCTCTTCCACCACGGTGCTGAC
CCTGTACCGCATCTCCTTCAGCCCCTGCTGGGTGGCCCGAACCAACGGCT
GCTTCTCCGTCACACCAGCAGCAGCAGCGGCGGCGGCGGCGGCATCAGCG
GCAGCGGCAGCAGCAGCAGCAGCCGGACCGGAGGGAGCGTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16211:4..744+

>mRNA_E-fasciculatus_F_contig16211.4231.1 ID=mRNA_E-fasciculatus_F_contig16211.4231.1|Name=mRNA_E-fasciculatus_F_contig16211.4231.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1482bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16211:4..744+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCTCCGCCATCTTCCCGATGAGCGTCGAGACCTTGGGCTCCACGACCG
CTGTCTCCAGGCCCTGGAATATACCACCCCCCCTGCTGCAGCTGCCGCTG
CCGCCGCTGCCGTTCTCGAGATCTTCGTCATCGCTGCCGCCACCGCCGTT
GCTGGCGGCATCGATCCGGAGCGGCAGGGGTCCCCCCGTCTCGCTCTCCC
TGCGCGCGTGCGCGGTGCTGGCCTCCAGGGCGGCGCAGGCGCGGTCGTCG
GCCGCCTCCGAGGCGCGCAGGGAGTCCCTGCAGGTGTCCGCCGACAGGCG
CGCGACGCGCGCGCGCGTGGCGTAGAGCCTGCTCCTCGCGGCCCTGAGGT
CGCGGCTGAACTGGAAGATCTCCCCGACGAGCTCGTCCTCCTCCCGGGAC
TCGCGGGCGTCCTGCACCTCGCAGAGGTCTCGCACCTTGTCGGCAACGGC
CGCCTGGAAGGCACGGAGGTAGGCCGCCGTTGCCGGGTCCTGCGTCGGCG
TGACGACGGCGACGTCGCCGTCGCTGCTTGTCCTGCTCTTTCCGGCGGCG
GCGGCGGCCAGAGTCTTCTTCTTTGTCGTCTCTTCCACCACGGTGCTGAC
CCTGTACCGCATCTCCTTCAGCCCCTGCTGGGTGGCCCGAACCAACGGCT
GCTTCTCCGTCACACCAGCAGCAGCAGCGGCGGCGGCGGCGGCATCAGCG
GCAGCGGCAGCAGCAGCAGCAGCCGGACCGGAGGGAGCGTTCAGCTCCGC
CATCTTCCCGATGAGCGTCGAGACCTTGGGCTCCACGACCGCTGTCTCCA
GGCCCTGGAATATACCACCCCCCCTGCTGCAGCTGCCGCTGCCGCCGCTG
CCGTTCTCGAGATCTTCGTCATCGCTGCCGCCACCGCCGTTGCTGGCGGC
ATCGATCCGGAGCGGCAGGGGTCCCCCCGTCTCGCTCTCCCTGCGCGCGT
GCGCGGTGCTGGCCTCCAGGGCGGCGCAGGCGCGGTCGTCGGCCGCCTCC
GAGGCGCGCAGGGAGTCCCTGCAGGTGTCCGCCGACAGGCGCGCGACGCG
CGCGCGCGTGGCGTAGAGCCTGCTCCTCGCGGCCCTGAGGTCGCGGCTGA
ACTGGAAGATCTCCCCGACGAGCTCGTCCTCCTCCCGGGACTCGCGGGCG
TCCTGCACCTCGCAGAGGTCTCGCACCTTGTCGGCAACGGCCGCCTGGAA
GGCACGGAGGTAGGCCGCCGTTGCCGGGTCCTGCGTCGGCGTGACGACGG
CGACGTCGCCGTCGCTGCTTGTCCTGCTCTTTCCGGCGGCGGCGGCGGCC
AGAGTCTTCTTCTTTGTCGTCTCTTCCACCACGGTGCTGACCCTGTACCG
CATCTCCTTCAGCCCCTGCTGGGTGGCCCGAACCAACGGCTGCTTCTCCG
TCACACCAGCAGCAGCAGCGGCGGCGGCGGCGGCATCAGCGGCAGCGGCA
GCAGCAGCAGCAGCCGGACCGGAGGGAGCGTT
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