mRNA_E-fasciculatus_F_contig1621.4230.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1621.4230.1
Unique NamemRNA_E-fasciculatus_F_contig1621.4230.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1621.4230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1621contigE-fasciculatus_F_contig1621:14978..15868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928083.9525533-CDS-E-fasciculatus_F_contig1621:14979..150351622928083.9525533-CDS-E-fasciculatus_F_contig1621:14979..15035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1621 14980..15035 -
1695995816.935956-CDS-E-fasciculatus_F_contig1621:14979..150351695995816.935956-CDS-E-fasciculatus_F_contig1621:14979..15035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1621 14980..15035 -
1622928083.9663792-CDS-E-fasciculatus_F_contig1621:15612..158681622928083.9663792-CDS-E-fasciculatus_F_contig1621:15612..15868Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1621 15613..15868 -
1695995816.9508576-CDS-E-fasciculatus_F_contig1621:15612..158681695995816.9508576-CDS-E-fasciculatus_F_contig1621:15612..15868Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1621 15613..15868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1621.4230.1prot_E-fasciculatus_F_contig1621.4230.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1621 14980..15868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1621.4230.1

>prot_E-fasciculatus_F_contig1621.4230.1 ID=prot_E-fasciculatus_F_contig1621.4230.1|Name=mRNA_E-fasciculatus_F_contig1621.4230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
IFLSHPITLPTQPHPSFLPPSGHRSAMPTAPTSNDPDKHPFIGRGVSADT
GSLVGVSWMGTSCLSPEDAERELATLRAIPMIRRQARTPSPAPANLHGWW
RGLT
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mRNA from alignment at E-fasciculatus_F_contig1621:14978..15868-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1621.4230.1 ID=mRNA_E-fasciculatus_F_contig1621.4230.1|Name=mRNA_E-fasciculatus_F_contig1621.4230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=891bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1621:14978..15868- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTTTCTCTCTCACCCAATAACCCTCCCTACACAACCACACCCCAGCTT
CCTACCCCCATCGGGGCACCGCTCGGCCATGCCTACCGCACCCACAAGCA
ATGATCCCGATAAGCACCCCTTCATTGGTCGAGGCGTCAGCGCCGACACA
GGATCTCTCGTCGGTGTAAGCTGGATGGGTACCTCGTGTCTGAGCCCGGA
AGATGCTGAGCGCGAGCTCGCCACTTTAAGAGCTATACCAATGATACGTC
GACAAGGCGAGAGTCATGCCTTGTAGTTTGTCTTGGTGGAAGTTGAAAGT
CACAATAAACTGGTGCTTTAGAGAACTTTGTTGGCTGGCCACGTCGCTGT
CGAAAGGACACGGAATGCGGGTGTGCGTCGTATCATACAGCGGCGTAGAT
ATATATGGAGCATGCAACATCATGACTTCCTCTCTCTTCCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTGCCTCAAAAAGGGCG
TGCAAGCAAGGGGTTGGCCAGCTGTCTATGCTACAATAATGGAAGTCTGT
CGTGCTTGTCAGGAGTTGATTTCTACTCCTGAGTATATATCTAGGCATGT
GGTGCCTGGATACATACCCGACAGACGCGCCGGTCACAGCCACACACCCT
GCATACGCAGGGTGGCTGATTCCCTCTCTGTGTTGTTCCGCCCCTCTTGC
TGTTGTTCAGGCATTATGCCGAAGGCGACAATGAAGGCAACAATGACATC
ACCCTCACAAGGTCGCGCTGCTACAACCCGCCGATCTCGTCGACGACCAC
TCTTCTTGCCCGCCTTTAAACCCGCAACAACAGCACGGACACCATCACCA
GCGCCGGCCAATCTTCACGGCTGGTGGCGGGGGCTCACCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1621:14978..15868-

>mRNA_E-fasciculatus_F_contig1621.4230.1 ID=mRNA_E-fasciculatus_F_contig1621.4230.1|Name=mRNA_E-fasciculatus_F_contig1621.4230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1621:14978..15868- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTTTCTCTCTCACCCAATAACCCTCCCTACACAACCACACCCCAGCTT
CCTACCCCCATCGGGGCACCGCTCGGCCATGCCTACCGCACCCACAAGCA
ATGATCCCGATAAGCACCCCTTCATTGGTCGAGGCGTCAGCGCCGACACA
GGATCTCTCGTCGGTGTAAGCTGGATGGGTACCTCGTGTCTGAGCCCGGA
AGATGCTGAGCGCGAGCTCGCCACTTTAAGAGCTATACCAATGATACGTC
GACAAGATCTTTCTCTCTCACCCAATAACCCTCCCTACACAACCACACCC
CAGCTTCCTACCCCCATCGGGGCACCGCTCGGCCATGCCTACCGCACCCA
CAAGCAATGATCCCGATAAGCACCCCTTCATTGGTCGAGGCGTCAGCGCC
GACACAGGATCTCTCGTCGGTGTAAGCTGGATGGGTACCTCGTGTCTGAG
CCCGGAAGATGCTGAGCGCGAGCTCGCCACTTTAAGAGCTATACCAATGA
TACGTCGACAAGCACGGACACCATCACCAGCGCCGGCCAATCTTCACGGC
TGGTGGCGGGGGCTCACCCACGGACACCATCACCAGCGCCGGCCAATCTT
CACGGCTGGTGGCGGGGGCTCACC
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