mRNA_E-fasciculatus_F_contig1621.4228.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1621.4228.1 vs. uniprot
Match: D7FWR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR3_ECTSI) HSP 1 Score: 605 bits (1559), Expect = 5.590e-218 Identity = 286/318 (89.94%), Postives = 297/318 (93.40%), Query Frame = 1
Query: 1 VGVETPCDKGRMTPDFLGTADWEKIYAKDTQVVVVQAHNHNPMDLLRVNKQPSVVRALWKLNWGVDPDVFGTCALRFLLKPRPDFKERYCEERSAVLGGKIASISLHLRTGDNPNYHPEWYKTLPADLDNFTACAAGLEEGLAMVAAMYATTPGPDSDIFGVFKERGDLVWLLGTDSSEVIDLLTEGGHTVAQGGKVAFVEGDEFHRSHSGNKGGKASNNAGPLIDLALLSEAPLLVGSYCSTFSQNTAEIGGLPVPLRLFLSTPFHHLLSGHNVDWDRFDDFRQGCRDVVADPSSREYLRVALTANLEPWIRCDDQG 954
VGV+TPCDK RMTPDFLGTADW++IYA DTQVVVVQ+HNHNPMDLLRVNKQPSV RAL KLN GVDPDVFGTCALRFLLKPRPDFKERYCEERSAVLGGK ASISLHLRTGDNP+YH EWYKTLP DL+NFTACA GLEEGLAMVAAMYA TPGPD DIF FKERGDLVWLLGTDSSEVIDLL EG HTVAQGGKVAFVEGDEFHRSHSGNKGGK SNNAGPLIDLALLSEAPLLVGSYCSTFSQNTAEIGGLPVPLRLFLSTPFHHLL +VDWDRFDDFRQGCRD+V+DPS+RE+LRVAL NLEPWIRCDDQG
Sbjct: 5 VGVKTPCDKSRMTPDFLGTADWDEIYANDTQVVVVQSHNHNPMDLLRVNKQPSVARALGKLNVGVDPDVFGTCALRFLLKPRPDFKERYCEERSAVLGGKTASISLHLRTGDNPSYHAEWYKTLPTDLENFTACATGLEEGLAMVAAMYAPTPGPDFDIFRTFKERGDLVWLLGTDSSEVIDLLKEGEHTVAQGGKVAFVEGDEFHRSHSGNKGGKGSNNAGPLIDLALLSEAPLLVGSYCSTFSQNTAEIGGLPVPLRLFLSTPFHHLLGRSHVDWDRFDDFRQGCRDIVSDPSAREHLRVALKTNLEPWIRCDDQG 322
BLAST of mRNA_E-fasciculatus_F_contig1621.4228.1 vs. uniprot
Match: A0A6H5JGH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH3_9PHAE) HSP 1 Score: 592 bits (1525), Expect = 1.600e-208 Identity = 276/318 (86.79%), Postives = 295/318 (92.77%), Query Frame = 1
Query: 4 GVETPCDKGRMTPDFLGTADWEKIYAKDTQVVVVQAHNHNPMDLLRVNKQPSVVRALWKLNWGVDPDVFGTCALRFLLKPRPDFKERYCEERSAVLGGKIASISLHLRTGDNPNYHPEWYKTLPADLDNFTACAAGLEEGLAMVAAMYATTPGPDSDIFGVFKERGDLVWLLGTDSSEVIDLLTEGGHTVAQGGKVAFVEGDEFHRSHSGNKGGKASNNAGPLIDLALLSEAPLLVGSYCSTFSQNTAEIGGLPVPLRLFLSTPFHHLLSGHNVDWDRFDDFRQGCRDVVADPSSREYLRVALTANLEPWIRCDDQGR 957
GV+TPCDK RMTPDFLGTADW++IYAKDTQVVVVQ+HNHNPMD+LRVNK+PSV RAL KLN VDPDVFGTCALRFLLKPRP+FK RYCEERSAVLG K ASISLHLRTGDNPNYHPEWYKTLP DL+NFTACA GLEEGLAMVAAMYA TPGPD DIF F ER DL+W+LGTDSSE+I+LLTEG +TVAQGGKVAFVEG++FHRSHSGNKGGK SNNAGPLIDLALLSEAPL VGSYCSTFSQNTAEIGGLPVPLRLFLSTPFHHLL G +VDWDRFDDFRQGCRD+V+DPSSRE+LRVAL NLEPWIRCDDQGR
Sbjct: 281 GVKTPCDKSRMTPDFLGTADWDEIYAKDTQVVVVQSHNHNPMDMLRVNKKPSVARALGKLNVDVDPDVFGTCALRFLLKPRPEFKGRYCEERSAVLGNKTASISLHLRTGDNPNYHPEWYKTLPTDLENFTACATGLEEGLAMVAAMYAATPGPDFDIFSTFMERRDLIWVLGTDSSEIINLLTEGEYTVAQGGKVAFVEGNKFHRSHSGNKGGKGSNNAGPLIDLALLSEAPLFVGSYCSTFSQNTAEIGGLPVPLRLFLSTPFHHLLGGSHVDWDRFDDFRQGCRDIVSDPSSREHLRVALKTNLEPWIRCDDQGR 598 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1621.4228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1621.4228.1 >prot_E-fasciculatus_F_contig1621.4228.1 ID=prot_E-fasciculatus_F_contig1621.4228.1|Name=mRNA_E-fasciculatus_F_contig1621.4228.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=320bp VGVETPCDKGRMTPDFLGTADWEKIYAKDTQVVVVQAHNHNPMDLLRVNKback to top mRNA from alignment at E-fasciculatus_F_contig1621:1183..9538+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1621.4228.1 ID=mRNA_E-fasciculatus_F_contig1621.4228.1|Name=mRNA_E-fasciculatus_F_contig1621.4228.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=8356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1621:1183..9538+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1621:1183..9538+ >mRNA_E-fasciculatus_F_contig1621.4228.1 ID=mRNA_E-fasciculatus_F_contig1621.4228.1|Name=mRNA_E-fasciculatus_F_contig1621.4228.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1920bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1621:1183..9538+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |