mRNA_E-fasciculatus_F_contig16207.4226.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16207.4226.1
Unique NamemRNA_E-fasciculatus_F_contig16207.4226.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16207.4226.1 vs. uniprot
Match: A0A6H5KHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT2_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 3.160e-69
Identity = 190/220 (86.36%), Postives = 193/220 (87.73%), Query Frame = 1 
Query:    4 AIPLSDLFNRGDDGGLSRYDTSGETPARARSKPTSTWKRMMSLGGGGSSYRYDGGEAGVGGEGKSSAEEVSESDRPKASASSLKKSSWSLKRSKSSVSNVSPPRASISXXXXXXXXXXXXXXXAERKXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-LSPMEDVDMDDDFKRAPPLSRDETSLGRTTRIKTTKRSSRGAP 660
            AIPLSDLF RGDDGGLSRYDTSGETPAR R KP STWKRMMSLGGGGSSYRYDGG+AGV GEGKSSAEEVSESDRPKASASSLKKSSWSLKRSKSSVSN SPPRASIS   XX          AERK      SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA LSPMEDVDMDDDFKRAPPLSRDETSLGRTTRIKTTK+ SRG+P
Sbjct:  892 AIPLSDLFKRGDDGGLSRYDTSGETPARTRGKPASTWKRMMSLGGGGSSYRYDGGDAGVSGEGKSSAEEVSESDRPKASASSLKKSSWSLKRSKSSVSNASPPRASISSSSXXTRQPRTPSM-AERKSERRAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSPMEDVDMDDDFKRAPPLSRDETSLGRTTRIKTTKKPSRGSP 1110
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BLAST of mRNA_E-fasciculatus_F_contig16207.4226.1 vs. uniprot
Match: D7FWV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 7.350e-30
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:    7 IPLSDLFNRGDDGGLSRYDTSGETPARARSKPTSTWKRMMSLGGGGSSYRYDGGEAGVGGEGKSSAEEVSESD 225
            IPLSDLF RGDDGGLSRYDTSGETPARARSKP STWKRMMS GG GSSYRYD G+AGV GEGKSSAEEVSESD
Sbjct:  848 IPLSDLFKRGDDGGLSRYDTSGETPARARSKPASTWKRMMSFGGAGSSYRYDAGDAGVSGEGKSSAEEVSESD 920
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16207.4226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHT2_9PHAE3.160e-6986.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWV3_ECTSI7.350e-3090.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16207contigE-fasciculatus_F_contig16207:1695..2782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size720
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928083.3941631-CDS-E-fasciculatus_F_contig16207:1694..19211622928083.3941631-CDS-E-fasciculatus_F_contig16207:1694..1921Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16207 1695..1921 +
1695995816.8556285-CDS-E-fasciculatus_F_contig16207:1694..19211695995816.8556285-CDS-E-fasciculatus_F_contig16207:1694..1921Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16207 1695..1921 +
1622928083.4042683-CDS-E-fasciculatus_F_contig16207:2290..27801622928083.4042683-CDS-E-fasciculatus_F_contig16207:2290..2780Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16207 2291..2780 +
1695995816.863912-CDS-E-fasciculatus_F_contig16207:2290..27801695995816.863912-CDS-E-fasciculatus_F_contig16207:2290..2780Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16207 2291..2780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16207.4226.1prot_E-fasciculatus_F_contig16207.4226.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16207 1695..2780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16207.4226.1

>prot_E-fasciculatus_F_contig16207.4226.1 ID=prot_E-fasciculatus_F_contig16207.4226.1|Name=mRNA_E-fasciculatus_F_contig16207.4226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=239bp
AAIPLSDLFNRGDDGGLSRYDTSGETPARARSKPTSTWKRMMSLGGGGSS
YRYDGGEAGVGGEGKSSAEEVSESDRPKASASSLKKSSWSLKRSKSSVSN
VSPPRASISSSSAASTRHPRTPSMAERKSERRSASAERSRTSSTSNRIAR
APSTVGRPGRSGRASAGGGGSKGSKAALSPMEDVDMDDDFKRAPPLSRDE
TSLGRTTRIKTTKRSSRGAPKAAAKEAAAAAAGGGAKET
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mRNA from alignment at E-fasciculatus_F_contig16207:1695..2782+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16207.4226.1 ID=mRNA_E-fasciculatus_F_contig16207.4226.1|Name=mRNA_E-fasciculatus_F_contig16207.4226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1088bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16207:1695..2782+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCTATCCCGCTGTCGGACTTGTTCAACAGGGGTGACGACGGCGGGCT
GTCGCGGTACGACACGAGCGGCGAGACGCCGGCGCGGGCCAGGAGCAAGC
CGACGTCCACCTGGAAGCGGATGATGAGCCTCGGCGGTGGCGGCAGCAGC
TACCGGTACGACGGCGGGGAGGCCGGGGTCGGCGGCGAGGGCAAGTCTTC
CGCCGAAGAGGTGTCCGAGAGCGACAGGTGCGTGTGCGCGTGTGCCGCGC
GTCCGTGCGTGTGTGTCTGTCGTTTAGCGTCGACCGCGCTAACGAGCTGA
CAAGACGGGTATATATATTTTTAACATCGCTCACGCCCTACCCTGCAGAC
CAATGAAAAGAAAAGAGATGTCACGTGCGGATAATTAAACGGCTGACCAA
TTAACAACAAGGCAGTCCTGAAAACATAAAGCGCTTGCTTCTATAGGCCG
TGATCAGTGCTCGGGAAAACTTGGTATCCCCTCCGCATCGACAGCTCGAT
CGATCCATCCCGCTCTCTGCAGTACCCATTGCCCTGCTCCCGCCTACTCA
CTCACTCTCTCTGGCCCTCTCCTAACCCCCCGCCCCTCATTCTCAGGCCC
AAGGCCTCCGCGTCCAGCCTCAAGAAGTCGAGCTGGTCGTTGAAGCGCTC
CAAGTCAAGCGTCAGCAACGTCTCCCCGCCCCGCGCGTCCATCTCCTCCT
CCTCCGCTGCATCGACGAGGCACCCCCGGACGCCGTCGATGGCGGAGCGC
AAGTCCGAGCGCAGGTCGGCTTCGGCGGAGCGCAGCAGGACGTCCTCCAC
CAGCAACCGCATCGCCCGCGCCCCGTCGACGGTCGGCCGCCCGGGCCGCT
CCGGCAGGGCGTCGGCCGGCGGTGGCGGATCGAAGGGATCGAAGGCCGCT
CTGTCCCCGATGGAGGACGTCGACATGGACGACGACTTCAAGCGCGCGCC
GCCGCTCTCCCGCGACGAGACCAGCCTCGGACGGACCACCAGGATCAAGA
CGACGAAAAGGTCCTCCAGGGGGGCACCCAAGGCGGCGGCGAAGGAGGCG
GCCGCCGCCGCCGCCGGCGGCGGCGCGAAGGAGACCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16207:1695..2782+

>mRNA_E-fasciculatus_F_contig16207.4226.1 ID=mRNA_E-fasciculatus_F_contig16207.4226.1|Name=mRNA_E-fasciculatus_F_contig16207.4226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1434bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16207:1695..2782+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCTATCCCGCTGTCGGACTTGTTCAACAGGGGTGACGACGGCGGGCT
GTCGCGGTACGACACGAGCGGCGAGACGCCGGCGCGGGCCAGGAGCAAGC
CGACGTCCACCTGGAAGCGGATGATGAGCCTCGGCGGTGGCGGCAGCAGC
TACCGGTACGACGGCGGGGAGGCCGGGGTCGGCGGCGAGGGCAAGTCTTC
CGCCGAAGAGGTGTCCGAGAGCGACAGGCGGCTATCCCGCTGTCGGACTT
GTTCAACAGGGGTGACGACGGCGGGCTGTCGCGGTACGACACGAGCGGCG
AGACGCCGGCGCGGGCCAGGAGCAAGCCGACGTCCACCTGGAAGCGGATG
ATGAGCCTCGGCGGTGGCGGCAGCAGCTACCGGTACGACGGCGGGGAGGC
CGGGGTCGGCGGCGAGGGCAAGTCTTCCGCCGAAGAGGTGTCCGAGAGCG
ACAGGCCCAAGGCCTCCGCGTCCAGCCTCAAGAAGTCGAGCTGGTCGTTG
AAGCGCTCCAAGTCAAGCGTCAGCAACGTCTCCCCGCCCCGCGCGTCCAT
CTCCTCCTCCTCCGCTGCATCGACGAGGCACCCCCGGACGCCGTCGATGG
CGGAGCGCAAGTCCGAGCGCAGGTCGGCTTCGGCGGAGCGCAGCAGGACG
TCCTCCACCAGCAACCGCATCGCCCGCGCCCCGTCGACGGTCGGCCGCCC
GGGCCGCTCCGGCAGGGCGTCGGCCGGCGGTGGCGGATCGAAGGGATCGA
AGGCCGCTCTGTCCCCGATGGAGGACGTCGACATGGACGACGACTTCAAG
CGCGCGCCGCCGCTCTCCCGCGACGAGACCAGCCTCGGACGGACCACCAG
GATCAAGACGACGAAAAGGTCCTCCAGGGGGGCACCCAAGGCGGCGGCGA
AGGAGGCGGCCGCCGCCGCCGCCGGCGGCGGCGCGAAGGAGACCGCCCAA
GGCCTCCGCGTCCAGCCTCAAGAAGTCGAGCTGGTCGTTGAAGCGCTCCA
AGTCAAGCGTCAGCAACGTCTCCCCGCCCCGCGCGTCCATCTCCTCCTCC
TCCGCTGCATCGACGAGGCACCCCCGGACGCCGTCGATGGCGGAGCGCAA
GTCCGAGCGCAGGTCGGCTTCGGCGGAGCGCAGCAGGACGTCCTCCACCA
GCAACCGCATCGCCCGCGCCCCGTCGACGGTCGGCCGCCCGGGCCGCTCC
GGCAGGGCGTCGGCCGGCGGTGGCGGATCGAAGGGATCGAAGGCCGCTCT
GTCCCCGATGGAGGACGTCGACATGGACGACGACTTCAAGCGCGCGCCGC
CGCTCTCCCGCGACGAGACCAGCCTCGGACGGACCACCAGGATCAAGACG
ACGAAAAGGTCCTCCAGGGGGGCACCCAAGGCGGCGGCGAAGGAGGCGGC
CGCCGCCGCCGCCGGCGGCGGCGCGAAGGAGACC
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