mRNA_E-fasciculatus_F_contig16207.4225.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16207.4225.1
Unique NamemRNA_E-fasciculatus_F_contig16207.4225.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16207.4225.1 vs. uniprot
Match: D7FWV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV3_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 8.480e-83
Identity = 227/306 (74.18%), Postives = 233/306 (76.14%), Query Frame = 3 
Query:    3 MGIGGSFSSRTGRPGLGPSGGXXXXXXXXXXXXXXXXXXXXXXXXXXHSSMSGLGXXXXXXXXXSQMGDPRLHMAAQQMGMGSSSRSVGGPXXXXXXXXXXXPPHFDPPQMNGPPVNPSTGLPVGMRQNGPPIVLPAGMVPRGGGPVVNPPMPPPSMP-----GPWGSTPQXXXXXXXXXXXXXXXXXXXXXXLGSSRSFTSRFGMKQGAAGRQQGFRRSSSFGDWLGPHGGGQPLSPTIEVDSFETQSTRSAPPFGATATVGDATAAAAXXXXXXXRVAAGGHVTGTEETKSPTKDKKGDGGAGK 905
            +GIGGSF+SRTGR GLGPS G                     XXXXX        XXXXXXXXX QMGDPRLHMAAQQMGM S+ R     XXXXXXXXXX PPHFDPPQM+GPPVNPSTGLPVGMRQNGPPIVLPAGMVPRGGG                  GPWGSTPQ XXXXXXXXXXXXXXXX     LG+SRSFTSRFGMKQGAAGRQQGFRRSSSFGDWLGP G GQPLSPT+EVDSFETQSTRSAPPFGATATVGDATAAA XXXXXXX   AGGHVTGTEETKS TKDKKGD GA K
Sbjct:  462 VGIGGSFNSRTGRAGLGPS-GVGMPFGNMGSHMNPPSFSGSSXXXXXXXXXXXXXXXXXXXXXXXQMGDPRLHMAAQQMGMSSNGRXX---XXXXXXXXXXMPPHFDPPQMSGPPVNPSTGLPVGMRQNGPPIVLPAGMVPRGGGXXXXXXXXXXXXXXXXXXGPWGSTPQQXXXXXXXXXXXXXXXX-----LGTSRSFTSRFGMKQGAAGRQQGFRRSSSFGDWLGPSGVGQPLSPTMEVDSFETQSTRSAPPFGATATVGDATAAAEXXXXXXXXXXAGGHVTGTEETKSSTKDKKGDEGADK 758
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BLAST of mRNA_E-fasciculatus_F_contig16207.4225.1 vs. uniprot
Match: A0A6H5KHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT2_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.330e-72
Identity = 194/263 (73.76%), Postives = 202/263 (76.81%), Query Frame = 3 
Query:  147 SSMSGLGXXXXXXXXXSQMGDPRLHMAAQQMGMGSSSRSVGGPXXXXXXXXXXXPPHFDPPQMNGPPVNPSTGLPVGMRQNGPPIVLPAGMVPRGGGPVVNPPMPPPSMPG----------PWGSTPQXXXXXXXXXXXXXXXXXXXXXXLGSSRSFTSRFGMKQGAAGRQQGFRRSSSFGDWLGPHGGGQPLSPTIEVDSFETQSTRSAPPFGATATVGDATAAAAXXXXXXXRVAAGGHVTGTEETKSPTKDKKGDGGAGK 905
            S   GLGXXXXXXXXXSQMGDPRLHMAAQQMGM ++ RS    XXXXXXXXX  PPHFDPPQ  GPPVNPSTGLP+GM QNGPPIVLPAGMVPRGGGPV                      PWGSTPQXXXXXXXXXXXXXXXX      L +SRSFTSRFGMKQGAAGRQQGFRR+SSFGDW+GP G GQPLSPT+E+DSFETQSTRSAPPFGATA VGDATAAA            GGHVTGTEETKS TKDKKGD GA K
Sbjct:  563 SMSGGLGXXXXXXXXXSQMGDPRLHMAAQQMGMSNNGRSG---XXXXXXXXXPMPPHFDPPQ--GPPVNPSTGLPIGMTQNGPPIVLPAGMVPRGGGPVXXXXXXXXXXXXXXXXXXXXXXPWGSTPQXXXXXXXXXXXXXXXX------LSTSRSFTSRFGMKQGAAGRQQGFRRASSFGDWMGPSGVGQPLSPTMEMDSFETQSTRSAPPFGATAAVGDATAAAE-----------GGHVTGTEETKSSTKDKKGDEGADK 803
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16207.4225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWV3_ECTSI8.480e-8374.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHT2_9PHAE1.330e-7273.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16207contigE-fasciculatus_F_contig16207:184..1427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArfaptin homology (AH) domain/BAR domain
Ec32 orthologEc-08_004540.1
Exons2
Model size921
Cds size918
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16207.4225.1prot_E-fasciculatus_F_contig16207.4225.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16207 186..1427 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928083.3398125-UTR-E-fasciculatus_F_contig16207:183..1851622928083.3398125-UTR-E-fasciculatus_F_contig16207:183..185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16207 184..185 +
1695995816.8272011-UTR-E-fasciculatus_F_contig16207:183..1851695995816.8272011-UTR-E-fasciculatus_F_contig16207:183..185Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16207 184..185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928083.3511405-CDS-E-fasciculatus_F_contig16207:185..9811622928083.3511405-CDS-E-fasciculatus_F_contig16207:185..981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16207 186..981 +
1695995816.8375251-CDS-E-fasciculatus_F_contig16207:185..9811695995816.8375251-CDS-E-fasciculatus_F_contig16207:185..981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16207 186..981 +
1622928083.3599799-CDS-E-fasciculatus_F_contig16207:1305..14271622928083.3599799-CDS-E-fasciculatus_F_contig16207:1305..1427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16207 1306..1427 +
1695995816.8473656-CDS-E-fasciculatus_F_contig16207:1305..14271695995816.8473656-CDS-E-fasciculatus_F_contig16207:1305..1427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16207 1306..1427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16207.4225.1

>prot_E-fasciculatus_F_contig16207.4225.1 ID=prot_E-fasciculatus_F_contig16207.4225.1|Name=mRNA_E-fasciculatus_F_contig16207.4225.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=306bp
MGIGGSFSSRTGRPGLGPSGGGMSYGMMGGGHMNPPSFSGSSFSGSTHSS
MSGLGGGGGGGGGGSQMGDPRLHMAAQQMGMGSSSRSVGGPGGPGGPPMG
PMPPHFDPPQMNGPPVNPSTGLPVGMRQNGPPIVLPAGMVPRGGGPVVNP
PMPPPSMPGPWGSTPQQQQQQQPGGGWGGGGGGGGGGGLGSSRSFTSRFG
MKQGAAGRQQGFRRSSSFGDWLGPHGGGQPLSPTIEVDSFETQSTRSAPP
FGATATVGDATAAAAAAIAASARVAAGGHVTGTEETKSPTKDKKGDGGAG
KDADAS
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mRNA from alignment at E-fasciculatus_F_contig16207:184..1427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16207.4225.1 ID=mRNA_E-fasciculatus_F_contig16207.4225.1|Name=mRNA_E-fasciculatus_F_contig16207.4225.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1244bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16207:184..1427+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGATGGGGATCGGCGGGTCGTTCAGCAGCCGCACGGGGAGGCCCGGCCTG
GGCCCCTCCGGAGGGGGCATGTCCTACGGGATGATGGGTGGCGGCCACAT
GAACCCGCCGAGCTTCAGCGGCAGCAGCTTCAGCGGCAGCACTCACTCGT
CCATGAGCGGGCTCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGGTCCCAG
ATGGGAGACCCTCGGCTGCACATGGCGGCCCAGCAGATGGGAATGGGAAG
CAGCAGCCGCAGCGTCGGCGGCCCGGGGGGGCCGGGGGGCCCGCCGATGG
GGCCGATGCCCCCTCACTTCGACCCCCCGCAGATGAACGGCCCCCCGGTG
AACCCATCCACGGGGCTCCCGGTTGGGATGAGGCAGAACGGCCCTCCCAT
CGTGCTGCCGGCGGGGATGGTACCGCGAGGCGGCGGTCCGGTCGTGAACC
CGCCGATGCCCCCCCCGTCCATGCCGGGCCCGTGGGGATCAACACCGCAA
CAGCAGCAGCAGCAGCAGCCCGGCGGCGGCTGGGGGGGTGGCGGCGGCGG
CGGCGGCGGCGGCGGGCTGGGCTCGTCCCGGTCGTTCACGTCCAGGTTCG
GCATGAAGCAGGGCGCGGCCGGACGGCAGCAGGGCTTCCGCCGGTCAAGC
AGCTTCGGCGACTGGCTGGGTCCGCACGGGGGAGGGCAGCCGCTGTCTCC
GACGATAGAGGTGGACAGCTTCGAGACGCAGTCCACCAGGAGTGCGCCGC
CGTTCGGGGCGACGGCGACAGTAGGCGACGCGACCGCGGCAGCCGCAGGT
GTGTACGTGTGACTCGACGGGGACACGCACGCTTGTTGGCCCTTTCTTTG
TTTCCTCTCGTGCTCGTGTTTGTTTTTTCATTTTTTTATGCCTTTATATA
AGAGGTTCGGTAGATACATCGGCGTTGGCTGTAGCGAAGGAGTACCGCAA
AGGCGCGTGCGTGATCGGTAGGTTTCGAAACGTCTTGCATCTCGCACAGC
ACGCGTTCACGTACACCACTGCTCCCGGCCACACAACCAACCATTCTCAC
GCCTCGCCCCCGCTTCTTGCTTGCCCCAATCCGTGAAAAAAACAACCTAC
CGCCGACCATCTCTCGTAACAGCTGCGATTGCTGCATCGGCGAGAGTAGC
GGCCGGCGGCCACGTCACCGGCACCGAGGAGACTAAGTCGCCCACGAAGG
ACAAGAAGGGAGATGGGGGAGCAGGCAAGGACGCCGACGCCTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16207:184..1427+

>mRNA_E-fasciculatus_F_contig16207.4225.1 ID=mRNA_E-fasciculatus_F_contig16207.4225.1|Name=mRNA_E-fasciculatus_F_contig16207.4225.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1836bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16207:184..1427+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGATCGGCGGGTCGTTCAGCAGCCGCACGGGGAGGCCCGGCCTGGG
CCCCTCCGGAGGGGGCATGTCCTACGGGATGATGGGTGGCGGCCACATGA
ACCCGCCGAGCTTCAGCGGCAGCAGCTTCAGCGGCAGCACTCACTCGTCC
ATGAGCGGGCTCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGGTCCCAGAT
GGGAGACCCTCGGCTGCACATGGCGGCCCAGCAGATGGGAATGGGAAGCA
GCAGCCGCAGCGTCGGCGGCCCGGGGGGGCCGGGGGGCCCGCCGATGGGG
CCGATGCCCCCTCACTTCGACCCCCCGCAGATGAACGGCCCCCCGGTGAA
CCCATCCACGGGGCTCCCGGTTGGGATGAGGCAGAACGGCCCTCCCATCG
TGCTGCCGGCGGGGATGGTACCGCGAGGCGGCGGTCCGGTCGTGAACCCG
CCGATGCCCCCCCCGTCCATGCCGGGCCCGTGGGGATCAACACCGCAACA
GCAGCAGCAGCAGCAGCCCGGCGGCGGCTGGGGGGGTGGCGGCGGCGGCG
GCGGCGGCGGCGGGCTGGGCTCGTCCCGGTCGTTCACGTCCAGGTTCGGC
ATGAAGCAGGGCGCGGCCGGACGGCAGCAGGGCTTCCGCCGGTCAAGCAG
CTTCGGCGACTGGCTGGGTCCGCACGGGGGAGGGCAGCCGCTGTCTCCGA
CGATAGAGGTGGACAGCTTCGAGACGCAGTCCACCAGGAGTGCGCCGCCG
TTCGGGGCGACGGCGACAGTAGGCGACGCGACCGCGGCAGCCGCAGATGG
GGATCGGCGGGTCGTTCAGCAGCCGCACGGGGAGGCCCGGCCTGGGCCCC
TCCGGAGGGGGCATGTCCTACGGGATGATGGGTGGCGGCCACATGAACCC
GCCGAGCTTCAGCGGCAGCAGCTTCAGCGGCAGCACTCACTCGTCCATGA
GCGGGCTCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGGTCCCAGATGGGA
GACCCTCGGCTGCACATGGCGGCCCAGCAGATGGGAATGGGAAGCAGCAG
CCGCAGCGTCGGCGGCCCGGGGGGGCCGGGGGGCCCGCCGATGGGGCCGA
TGCCCCCTCACTTCGACCCCCCGCAGATGAACGGCCCCCCGGTGAACCCA
TCCACGGGGCTCCCGGTTGGGATGAGGCAGAACGGCCCTCCCATCGTGCT
GCCGGCGGGGATGGTACCGCGAGGCGGCGGTCCGGTCGTGAACCCGCCGA
TGCCCCCCCCGTCCATGCCGGGCCCGTGGGGATCAACACCGCAACAGCAG
CAGCAGCAGCAGCCCGGCGGCGGCTGGGGGGGTGGCGGCGGCGGCGGCGG
CGGCGGCGGGCTGGGCTCGTCCCGGTCGTTCACGTCCAGGTTCGGCATGA
AGCAGGGCGCGGCCGGACGGCAGCAGGGCTTCCGCCGGTCAAGCAGCTTC
GGCGACTGGCTGGGTCCGCACGGGGGAGGGCAGCCGCTGTCTCCGACGAT
AGAGGTGGACAGCTTCGAGACGCAGTCCACCAGGAGTGCGCCGCCGTTCG
GGGCGACGGCGACAGTAGGCGACGCGACCGCGGCAGCCGCAGCTGCGATT
GCTGCATCGGCGAGAGTAGCGGCCGGCGGCCACGTCACCGGCACCGAGGA
GACTAAGTCGCCCACGAAGGACAAGAAGGGAGATGGGGGAGCAGGCAAGG
ACGCCGACGCCTCGCTGCGATTGCTGCATCGGCGAGAGTAGCGGCCGGCG
GCCACGTCACCGGCACCGAGGAGACTAAGTCGCCCACGAAGGACAAGAAG
GGAGATGGGGGAGCAGGCAAGGACGCCGACGCCTCG
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