mRNA_E-fasciculatus_F_contig162.4221.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig162.4221.1
Unique NamemRNA_E-fasciculatus_F_contig162.4221.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig162.4221.1 vs. uniprot
Match: A0A6H5JHG7_9PHAE (ANAPC8 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHG7_9PHAE)

HSP 1 Score: 396 bits (1018), Expect = 6.170e-130
Identity = 222/247 (89.88%), Postives = 229/247 (92.71%), Query Frame = 1 
Query:    1 MHFLCLYYKNKGDYTRASKMANGLLDYTGTSREAALAVLREIRSIMETRQHQAAESSALPQTHNANNSHNDISLDGGSGRPLFTPRAATGSSHHDSSGAGGSQLFNPNSSGVGSAGGGASRAAGGSFPTPTPRRPGRARSGVSPGTGGCVGXXXXXXXXXGTPGYRLMGNSGGGTSLAPRSPEDMSVAMSLGSSDEDDGGGALARYSPGIATPVTTGHGGAGAGHDGSPEVGGDGQGEESLSDILSP 741
            MHFLCLYYKN+GDYTRASKMANGLLD+TGTSREAALAVLREIRSIMETRQHQAAESSALPQ HNANNSHND+SLDGGSGRPLFTPRAATG+SHHD SGAGGSQLF  N+SGVG +  GA RAAGG+FPTPTPRRPGR  SGVSPGTG    XXXXXXXX GTPGYRLMGNSGGGTSLAPRSPEDMSVAMSLGSSDEDD GGALARYSPGIATPV TGHGGAGAGHDGSPE GGDGQGEESLSDILSP
Sbjct:  607 MHFLCLYYKNRGDYTRASKMANGLLDHTGTSREAALAVLREIRSIMETRQHQAAESSALPQPHNANNSHNDVSLDGGSGRPLFTPRAATGASHHDGSGAGGSQLFIANNSGVGGSVRGAIRAAGGTFPTPTPRRPGRVCSGVSPGTGXXXXXXXXXXXXSGTPGYRLMGNSGGGTSLAPRSPEDMSVAMSLGSSDEDDDGGALARYSPGIATPVATGHGGAGAGHDGSPEAGGDGQGEESLSDILSP 853
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig162.4221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHG7_9PHAE6.170e-13089.88ANAPC8 domain-containing protein n=3 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig162contigE-fasciculatus_F_contig162:1037..2448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score406.8
Seed ortholog evalue7.5e-111
Seed eggNOG ortholog2880.D7FLS8
Preferred nameAPC8
KEGG koko:K03355
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0008150,GO:0031347,GO:0048583,GO:0050789,GO:0065007,GO:0080134
EggNOG free text desc.regulation of mitotic metaphase/anaphase transition
EggNOG OGsCOG0013@1,KOG1155@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_002490.1
Exons2
Model size744
Cds size744
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928082.618065-CDS-E-fasciculatus_F_contig162:1036..11261622928082.618065-CDS-E-fasciculatus_F_contig162:1036..1126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig162 1037..1126 +
1695995816.4958787-CDS-E-fasciculatus_F_contig162:1036..11261695995816.4958787-CDS-E-fasciculatus_F_contig162:1036..1126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig162 1037..1126 +
1622928082.6316948-CDS-E-fasciculatus_F_contig162:1794..24481622928082.6316948-CDS-E-fasciculatus_F_contig162:1794..2448Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig162 1795..2448 +
1695995816.5062056-CDS-E-fasciculatus_F_contig162:1794..24481695995816.5062056-CDS-E-fasciculatus_F_contig162:1794..2448Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig162 1795..2448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig162.4221.1prot_E-fasciculatus_F_contig162.4221.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig162 1037..2448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig162.4221.1

>prot_E-fasciculatus_F_contig162.4221.1 ID=prot_E-fasciculatus_F_contig162.4221.1|Name=mRNA_E-fasciculatus_F_contig162.4221.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=248bp
MHFLCLYYKNKGDYTRASKMANGLLDYTGTSREAALAVLREIRSIMETRQ
HQAAESSALPQTHNANNSHNDISLDGGSGRPLFTPRAATGSSHHDSSGAG
GSQLFNPNSSGVGSAGGGASRAAGGSFPTPTPRRPGRARSGVSPGTGGCV
GGAAGGGAGSGTPGYRLMGNSGGGTSLAPRSPEDMSVAMSLGSSDEDDGG
GALARYSPGIATPVTTGHGGAGAGHDGSPEVGGDGQGEESLSDILSP*
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mRNA from alignment at E-fasciculatus_F_contig162:1037..2448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig162.4221.1 ID=mRNA_E-fasciculatus_F_contig162.4221.1|Name=mRNA_E-fasciculatus_F_contig162.4221.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1412bp|location=Sequence derived from alignment at E-fasciculatus_F_contig162:1037..2448+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATTTCCTGTGTCTCTACTACAAGAATAAGGGTGACTACACCAGGGC
ATCCAAGATGGCGAACGGTCTCCTGGACTACACGGGAACGGTGAGCTTCC
CTTCGCACTTTTTTTCATTCCTGTGGTAGTTACATCGTGCACCCCTCGCA
TGTTGGTTCGATTGTTGGGTTTTGTGGTCTTTGCATTTTGTTGCTGCTGC
TTCCTCGACCGTCAATCCTGCTGCTACCGGCAGGTGTCATTTGTTGCTAT
CGGTTGGTGATGTTGAATGGGTCGTCGTTGTTGTAACTGTTGCCGGTGAC
CACCCTGTCGGCATGTTGATGGTTGCTGCGGGTACCGGTTTGTTGTGCGG
ATACTTTCTGGAACGCTTTTTGTGGTGGAAGGGACAGCGCCAGGGATCTC
GCATGCCGATCTGCTCCTGTACTCTGCTCCATTTTCGTTTTGGGTTTTGT
CCCGTATGTCCAGATAGGCATTGGCGAGGCATCCAACGTCTTCTAGGAGC
ACACATGGATACGGGGCGGTCTTTCTCGCCGCAACATGTTCACTGGAGTA
ACTGCTGTGCAGGATGCAGTTCGCTCTTGTGCTTCTGATCCTATTCGTCA
AGTGTACATGCCCGCGCTTCAAACTCGCAACAGTTTTTTTTGCTGCCTTG
GGCTTTTCGTACTTTCCAGCGACCGACATTGATGCCCATTTCTGCTGAAC
GTATTTATCCCCTCGTTACGGCCGCCCCCACGTCACACCAACGACGACAC
TGCAACAGTCGCGAGAGGCAGCACTAGCGGTTCTGAGAGAAATCCGAAGC
ATAATGGAAACCCGGCAGCACCAAGCGGCCGAGTCTTCCGCCCTACCTCA
GACCCACAACGCCAACAACAGCCACAACGATATCTCCCTTGACGGGGGCA
GCGGGCGGCCCCTCTTCACGCCTAGGGCGGCGACAGGGTCATCTCACCAC
GACAGCAGCGGGGCGGGCGGCAGCCAGCTCTTCAACCCCAACAGCAGCGG
CGTTGGTAGTGCTGGTGGTGGTGCATCAAGAGCAGCAGGGGGCAGCTTCC
CCACCCCGACCCCTCGCAGACCAGGCAGGGCCCGCAGCGGGGTTTCACCC
GGGACAGGCGGATGCGTCGGGGGAGCCGCGGGAGGGGGCGCCGGATCAGG
GACCCCAGGCTATCGGCTGATGGGCAACAGCGGAGGGGGCACTTCGTTGG
CGCCACGGTCCCCGGAAGACATGAGCGTCGCGATGAGCCTGGGGTCTTCA
GACGAAGACGACGGCGGAGGAGCGCTGGCGCGATATTCACCGGGCATAGC
GACGCCGGTCACGACGGGCCATGGTGGTGCGGGTGCCGGACATGATGGGT
CGCCTGAGGTGGGCGGAGACGGGCAGGGCGAGGAGTCTTTAAGCGATATC
CTCTCCCCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig162:1037..2448+

>mRNA_E-fasciculatus_F_contig162.4221.1 ID=mRNA_E-fasciculatus_F_contig162.4221.1|Name=mRNA_E-fasciculatus_F_contig162.4221.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-fasciculatus_F_contig162:1037..2448+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATTTCCTGTGTCTCTACTACAAGAATAAGGGTGACTACACCAGGGC
ATCCAAGATGGCGAACGGTCTCCTGGACTACACGGGAACGATGCATTTCC
TGTGTCTCTACTACAAGAATAAGGGTGACTACACCAGGGCATCCAAGATG
GCGAACGGTCTCCTGGACTACACGGGAACGTCGCGAGAGGCAGCACTAGC
GGTTCTGAGAGAAATCCGAAGCATAATGGAAACCCGGCAGCACCAAGCGG
CCGAGTCTTCCGCCCTACCTCAGACCCACAACGCCAACAACAGCCACAAC
GATATCTCCCTTGACGGGGGCAGCGGGCGGCCCCTCTTCACGCCTAGGGC
GGCGACAGGGTCATCTCACCACGACAGCAGCGGGGCGGGCGGCAGCCAGC
TCTTCAACCCCAACAGCAGCGGCGTTGGTAGTGCTGGTGGTGGTGCATCA
AGAGCAGCAGGGGGCAGCTTCCCCACCCCGACCCCTCGCAGACCAGGCAG
GGCCCGCAGCGGGGTTTCACCCGGGACAGGCGGATGCGTCGGGGGAGCCG
CGGGAGGGGGCGCCGGATCAGGGACCCCAGGCTATCGGCTGATGGGCAAC
AGCGGAGGGGGCACTTCGTTGGCGCCACGGTCCCCGGAAGACATGAGCGT
CGCGATGAGCCTGGGGTCTTCAGACGAAGACGACGGCGGAGGAGCGCTGG
CGCGATATTCACCGGGCATAGCGACGCCGGTCACGACGGGCCATGGTGGT
GCGGGTGCCGGACATGATGGGTCGCCTGAGGTGGGCGGAGACGGGCAGGG
CGAGGAGTCTTTAAGCGATATCCTCTCCCCGTGATCGCGAGAGGCAGCAC
TAGCGGTTCTGAGAGAAATCCGAAGCATAATGGAAACCCGGCAGCACCAA
GCGGCCGAGTCTTCCGCCCTACCTCAGACCCACAACGCCAACAACAGCCA
CAACGATATCTCCCTTGACGGGGGCAGCGGGCGGCCCCTCTTCACGCCTA
GGGCGGCGACAGGGTCATCTCACCACGACAGCAGCGGGGCGGGCGGCAGC
CAGCTCTTCAACCCCAACAGCAGCGGCGTTGGTAGTGCTGGTGGTGGTGC
ATCAAGAGCAGCAGGGGGCAGCTTCCCCACCCCGACCCCTCGCAGACCAG
GCAGGGCCCGCAGCGGGGTTTCACCCGGGACAGGCGGATGCGTCGGGGGA
GCCGCGGGAGGGGGCGCCGGATCAGGGACCCCAGGCTATCGGCTGATGGG
CAACAGCGGAGGGGGCACTTCGTTGGCGCCACGGTCCCCGGAAGACATGA
GCGTCGCGATGAGCCTGGGGTCTTCAGACGAAGACGACGGCGGAGGAGCG
CTGGCGCGATATTCACCGGGCATAGCGACGCCGGTCACGACGGGCCATGG
TGGTGCGGGTGCCGGACATGATGGGTCGCCTGAGGTGGGCGGAGACGGGC
AGGGCGAGGAGTCTTTAAGCGATATCCTCTCCCCGTGA
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