mRNA_E-fasciculatus_F_contig16191.4218.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16191.4218.1
Unique NamemRNA_E-fasciculatus_F_contig16191.4218.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16191.4218.1 vs. uniprot
Match: D7FUA9_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUA9_ECTSI)

HSP 1 Score: 424 bits (1089), Expect = 1.390e-143
Identity = 230/253 (90.91%), Postives = 237/253 (93.68%), Query Frame = 1 
Query:   13 QVDKAMFSDLTAEMKENLQTTLPKSSFTDKDDMIPVMADPKVSPVIDTGVLGLPTPPPREPEVVPDATVNVNADGTVSNGGGTVNGGDGAAVVDAEVVREGSWEAGFAPDLGGAAAGDASDDSAYSPAGFKADADFDVPMKDGETGELTERQREVAAGLRRTYEKLIKTGMMQETNPDGTPAKVPDMEEMARAYETEGFMFKEGDFSEEELSKYMDMXXXXXX--GGLALDDDLPGGDIDLDDPATRSAFGLD 765
            +VDKAMFSDLTAEMKENLQTTLPKSSFTDKDDMIPVMADPKVSPVIDTGVLGLPTPPPREPE VPD TVNVNADGTVSNGGG      GAA +DAEVVREGSWEAGFAPDLGGAAAG   DDSAYSPAGF+ADADF+VPMKDGE GELTERQREVAAGLRRTYEKL+KTGM+QETNPDGTPAK+PDMEEMARAYETEGFMFKEGDFSEEELSKYMDMXXXXXX   GLALDDDLPGGDIDLDDPATRSAFGLD
Sbjct:  349 KVDKAMFSDLTAEMKENLQTTLPKSSFTDKDDMIPVMADPKVSPVIDTGVLGLPTPPPREPEAVPDETVNVNADGTVSNGGG------GAAAIDAEVVREGSWEAGFAPDLGGAAAGGGPDDSAYSPAGFRADADFNVPMKDGEAGELTERQREVAAGLRRTYEKLVKTGMVQETNPDGTPAKMPDMEEMARAYETEGFMFKEGDFSEEELSKYMDMXXXXXXXXAGLALDDDLPGGDIDLDDPATRSAFGLD 595
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16191.4218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUA9_ECTSI1.390e-14390.91CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16191contigE-fasciculatus_F_contig16191:70..2044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score428.7
Seed ortholog evalue1.9e-117
Seed eggNOG ortholog2880.D7FUA9
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size768
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16191.4218.1prot_E-fasciculatus_F_contig16191.4218.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16191 70..2044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928082.2657897-CDS-E-fasciculatus_F_contig16191:69..2041622928082.2657897-CDS-E-fasciculatus_F_contig16191:69..204Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16191 70..204 +
1695995816.3636584-CDS-E-fasciculatus_F_contig16191:69..2041695995816.3636584-CDS-E-fasciculatus_F_contig16191:69..204Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16191 70..204 +
1622928082.2822673-CDS-E-fasciculatus_F_contig16191:800..11241622928082.2822673-CDS-E-fasciculatus_F_contig16191:800..1124Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16191 801..1124 +
1695995816.3739357-CDS-E-fasciculatus_F_contig16191:800..11241695995816.3739357-CDS-E-fasciculatus_F_contig16191:800..1124Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16191 801..1124 +
1622928082.2927873-CDS-E-fasciculatus_F_contig16191:1506..16261622928082.2927873-CDS-E-fasciculatus_F_contig16191:1506..1626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16191 1507..1626 +
1695995816.3823977-CDS-E-fasciculatus_F_contig16191:1506..16261695995816.3823977-CDS-E-fasciculatus_F_contig16191:1506..1626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16191 1507..1626 +
1622928082.3060398-CDS-E-fasciculatus_F_contig16191:1855..20441622928082.3060398-CDS-E-fasciculatus_F_contig16191:1855..2044Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16191 1856..2044 +
1695995816.3911335-CDS-E-fasciculatus_F_contig16191:1855..20441695995816.3911335-CDS-E-fasciculatus_F_contig16191:1855..2044Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16191 1856..2044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16191.4218.1

>prot_E-fasciculatus_F_contig16191.4218.1 ID=prot_E-fasciculatus_F_contig16191.4218.1|Name=mRNA_E-fasciculatus_F_contig16191.4218.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=256bp
MLFLQVDKAMFSDLTAEMKENLQTTLPKSSFTDKDDMIPVMADPKVSPVI
DTGVLGLPTPPPREPEVVPDATVNVNADGTVSNGGGTVNGGDGAAVVDAE
VVREGSWEAGFAPDLGGAAAGDASDDSAYSPAGFKADADFDVPMKDGETG
ELTERQREVAAGLRRTYEKLIKTGMMQETNPDGTPAKVPDMEEMARAYET
EGFMFKEGDFSEEELSKYMDMDMGMGMGGLALDDDLPGGDIDLDDPATRS
AFGLD*
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mRNA from alignment at E-fasciculatus_F_contig16191:70..2044+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16191.4218.1 ID=mRNA_E-fasciculatus_F_contig16191.4218.1|Name=mRNA_E-fasciculatus_F_contig16191.4218.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1975bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16191:70..2044+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTTTCTGCAGGTGGATAAGGCCATGTTCTCGGACCTGACGGCTGA
GATGAAGGAGAACCTCCAGACCACTCTGCCAAAGTCTTCCTTCACCGACA
AGGATGACATGATCCCGGTCATGGCAGACCCCAAGGTAATTGCTCCCCCC
CCCTCTTGTGGAAGTGGAGACCACAAAAAAAAAATGATAAGCCATTCGCA
GCTGTCATCCTTACGCAAGGTAGTAGGCACAAGATGCCCAACATCCTTAG
TAGCATGCAGCGTATCCTCCATGCGACTCGCCGAATACCTCACGGCGCTT
GGCGCTTGGTGATGCGAGAGCCTGGTCCGGTGAGAACCAGGCGTGCTCCG
TCCCGACTGTGCAGGGATGCCAGGTCAATGGTCTAACGACTCCGGTATGC
ACGACTATGAGTATCCCCCCCCCCCTCGTGTGTAGGCATGCATACGACAC
CGCACGTTTTTTTTTATCGGAATCCCTGTATGTTTCGGCGTGATTACTGA
CTTGACCAGATCAAGGTCGGGTGGCGAGTGTGGTATGCGCGTTTTCTCTC
CACACTCCCCACACTCGTCGGTTTCGTGGCATTTCACGACCCCTTGTATC
TCAACAATATTTGTGATATCTACGCAATCTACGATTCTCCCCACACTCCC
CACCCTCCTCGGTTTCGTGGCATGTCACGACCCCTGTATCTCAACAATAT
TTGTGATATCTACGCAATCTACGAAACACAGGTTTCCCCCGTGATCGACA
CGGGAGTCCTGGGACTGCCCACGCCCCCTCCCCGCGAACCCGAGGTGGTA
CCCGACGCGACCGTCAACGTCAACGCCGACGGGACTGTCAGCAACGGCGG
CGGGACTGTCAACGGCGGCGACGGGGCTGCTGTGGTAGACGCGGAGGTGG
TGAGGGAAGGGTCTTGGGAGGCGGGTTTCGCTCCGGACTTGGGTGGAGCC
GCTGCCGGGGATGCGTCCGATGATTCTGCGTACTCCCCCGCCGGGTTTAA
GGCGGATGCGGACTTCGACGTCCCGATGAAAGACGGGGAGACTGGCGAAC
TGACGGTGAGGGTTCCCTGCGAGTTACTGCTGTAGTGCTGCGGAAAGGTC
ACGTGGGAGTCGAAGCTTGACGCGGCAACATACCCACTGCTGTGCACGCG
TTTTTAGAACCAACTGATGAGTTCGGCGATCTATGAACCTGATGCGTGCA
TACCACACGCGAATCATGTATTGTATGCACCAACCGGAACAAGAGACTCA
TTCAAATCGCATGACACCTTTTGCTTTTTATTCGTGAAGCAATGACCCGA
TAGACCGACAGCCCGCAGACTCACCGCGTTTGTTCTTTCCCTCCGTCCTG
TGGGATCGAACCGGGCCTGTGCGTCAAACATACCATCCGCAACATTAACG
CATACCCTTTTGTTTGCTTCATTGCTATATTCAACAGGAGAGGCAACGTG
AGGTGGCAGCGGGTCTGAGAAGGACCTACGAGAAGCTGATCAAGACGGGT
ATGATGCAAGAGACCAACCCTGACGGGACCCCGGCCAAGGTCCCCGACAT
GGAAGAGGTGCATAATTTCCGCCTTTCTTTGGATCATCGACCGCGCTATG
TAGCCTCTCTAGTTGTACCCTCGGACAAGACAGACGTTTTGCAACCGGGT
TCAAACCTTTAGACCCATCAGCGCTGATTGGTCTTCTTGGGTTTGGTATC
GGTTTGCTATGCTATAAGATGCCAGTTCTACTCAAGGGGAAGTCTGACTC
CGCTCGATCCAACCAATCCAACACGCGCTTGTTCAGATGGCGAGGGCGTA
CGAGACGGAGGGCTTCATGTTCAAGGAGGGCGATTTCTCCGAGGAGGAGC
TGAGCAAGTACATGGACATGGACATGGGCATGGGCATGGGAGGCTTGGCG
CTGGACGATGACTTGCCTGGCGGGGACATCGACCTCGACGACCCGGCCAC
ACGATCGGCGTTCGGCCTTGATTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16191:70..2044+

>mRNA_E-fasciculatus_F_contig16191.4218.1 ID=mRNA_E-fasciculatus_F_contig16191.4218.1|Name=mRNA_E-fasciculatus_F_contig16191.4218.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1536bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16191:70..2044+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTTTCTGCAGGTGGATAAGGCCATGTTCTCGGACCTGACGGCTGA
GATGAAGGAGAACCTCCAGACCACTCTGCCAAAGTCTTCCTTCACCGACA
AGGATGACATGATCCCGGTCATGGCAGACCCCAAGATGTTGTTTCTGCAG
GTGGATAAGGCCATGTTCTCGGACCTGACGGCTGAGATGAAGGAGAACCT
CCAGACCACTCTGCCAAAGTCTTCCTTCACCGACAAGGATGACATGATCC
CGGTCATGGCAGACCCCAAGGTTTCCCCCGTGATCGACACGGGAGTCCTG
GGACTGCCCACGCCCCCTCCCCGCGAACCCGAGGTGGTACCCGACGCGAC
CGTCAACGTCAACGCCGACGGGACTGTCAGCAACGGCGGCGGGACTGTCA
ACGGCGGCGACGGGGCTGCTGTGGTAGACGCGGAGGTGGTGAGGGAAGGG
TCTTGGGAGGCGGGTTTCGCTCCGGACTTGGGTGGAGCCGCTGCCGGGGA
TGCGTCCGATGATTCTGCGTACTCCCCCGCCGGGTTTAAGGCGGATGCGG
ACTTCGACGTCCCGATGAAAGACGGGGAGACTGGCGAACTGACGGTTTCC
CCCGTGATCGACACGGGAGTCCTGGGACTGCCCACGCCCCCTCCCCGCGA
ACCCGAGGTGGTACCCGACGCGACCGTCAACGTCAACGCCGACGGGACTG
TCAGCAACGGCGGCGGGACTGTCAACGGCGGCGACGGGGCTGCTGTGGTA
GACGCGGAGGTGGTGAGGGAAGGGTCTTGGGAGGCGGGTTTCGCTCCGGA
CTTGGGTGGAGCCGCTGCCGGGGATGCGTCCGATGATTCTGCGTACTCCC
CCGCCGGGTTTAAGGCGGATGCGGACTTCGACGTCCCGATGAAAGACGGG
GAGACTGGCGAACTGACGGAGAGGCAACGTGAGGTGGCAGCGGGTCTGAG
AAGGACCTACGAGAAGCTGATCAAGACGGGTATGATGCAAGAGACCAACC
CTGACGGGACCCCGGCCAAGGTCCCCGACATGGAAGAGGAGAGGCAACGT
GAGGTGGCAGCGGGTCTGAGAAGGACCTACGAGAAGCTGATCAAGACGGG
TATGATGCAAGAGACCAACCCTGACGGGACCCCGGCCAAGGTCCCCGACA
TGGAAGAGATGGCGAGGGCGTACGAGACGGAGGGCTTCATGTTCAAGGAG
GGCGATTTCTCCGAGGAGGAGCTGAGCAAGTACATGGACATGGACATGGG
CATGGGCATGGGAGGCTTGGCGCTGGACGATGACTTGCCTGGCGGGGACA
TCGACCTCGACGACCCGGCCACACGATCGGCGTTCGGCCTTGATTAGATG
GCGAGGGCGTACGAGACGGAGGGCTTCATGTTCAAGGAGGGCGATTTCTC
CGAGGAGGAGCTGAGCAAGTACATGGACATGGACATGGGCATGGGCATGG
GAGGCTTGGCGCTGGACGATGACTTGCCTGGCGGGGACATCGACCTCGAC
GACCCGGCCACACGATCGGCGTTCGGCCTTGATTAG
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