mRNA_E-fasciculatus_F_contig16185.4216.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16185.4216.1
Unique NamemRNA_E-fasciculatus_F_contig16185.4216.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16185.4216.1 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.160e-57
Identity = 234/293 (79.86%), Postives = 241/293 (82.25%), Query Frame = 1 
Query:   73 VPRVDTNSGAVPSEGAGAGXXXXXXXXXXGESSLKREFVGGMMNGAPPNASPRGSAAAAPTGGDSRVAVAASTASSPPSLXXXXXXXXXXXXX----GGGATMRLQSLADLATKELQHMYEVDEADT-GTHNRXXXXXXXXXXXXXXXXX---------SGFSPKRHLSPRLSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSHHHHLRERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKGGRIDSIKEELEVTL 909
            V  V T  G VPSEGAG  XXXXXXXXX GES+LKREF GGM+NGA PN S R SAAAA +GGD R A   STASSP   XXXXXXXXXXXXX    GGGA+MRLQSLADLAT+ELQ M +VDE DT G H  XXXXXXXXXXXXXXXXX         +GFSPKRHLSPRLSGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LRERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRK GRIDSIKEELEV L
Sbjct:   83 VAHVGTEGGTVPSEGAGXXXXXXXXXXXSGESALKREF-GGMLNGALPNTSYRDSAAAALSGGDPRAATV-STASSPSXXXXXXXXXXXXXXXXXXIGGGASMRLQSLADLATQELQTMCDVDETDTAGAHGXXXXXXXXXXXXXXXXXXXXXRTPPAPAGFSPKRHLSPRLSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LRERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELEVCL 371
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BLAST of mRNA_E-fasciculatus_F_contig16185.4216.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 9.060e-50
Identity = 179/289 (61.94%), Postives = 184/289 (63.67%), Query Frame = 1 
Query:   97 GAVPSEGAGAGXXXXXXXXXXGESSLKREFVGGMMNGAPPNASPRGSAAAAPTGGDSRVAVAASTASSPPSLXXXXXXXXXXXXXGGGATMRLQSLADLATKELQHMYEVDEADT-GTHNRXXXXXXXXXXXXXXXXXS---------GFSPKRHLSPRLSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------PSHHHHLRERGVPRSRHERAEXXXXXXXXXXXXXXXXXXRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKGGRIDSIKEELE 900
            GAVP EGA   XXXXXXXXX GES+LKREF GG +NGA PNAS R SAAAA  GGD R A A S ASSP S              GG A+MRLQSLADLAT+ELQ M +VDE DT G H                   S         GFSPKRHLSPRLSGG  XXXXXXXXXXXXXXXX        XXXXX           P     LRERGVPRSRHER  XXXXXXXXX         RG RHRPRSVSMPEGMELQARAWSGGYSSGRRK GRIDSIKEELE
Sbjct:   77 GAVPPEGAXXXXXXXXXXXXSGESALKREF-GGTVNGALPNASYRDSAAAALPGGDPREA-AVSIASSPSSFSLSTSPRPRSASSGGVASMRLQSLADLATQELQTMGDVDETDTPGIHGHRRHQQHQRSLSNGNSQSSSARTPPLPAGFSPKRHLSPRLSGGGGXXXXXXXXXXXXXXXXVSALSSAAXXXXXCSAPLPPARAAPXXXXXLRERGVPRSRHERXXXXXXXXXXXHAAARAEGGRGMRHRPRSVSMPEGMELQARAWSGGYSSGRRKSGRIDSIKEELE 363
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16185.4216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD77_ECTSI1.160e-5779.86CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K330_9PHAE9.060e-5061.94CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16185contigE-fasciculatus_F_contig16185:154..2364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.8
Seed ortholog evalue1.5e-50
Seed eggNOG ortholog2880.D8LD77
EggNOG free text desc.CCT motif
EggNOG OGs2E1UC@1,2S94C@2759
Ec32 ortholog descriptionCCT domain protein
Ec32 orthologEc-05_001470.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size978
Cds size978
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16185.4216.1prot_E-fasciculatus_F_contig16185.4216.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16185 154..2364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928082.09622-CDS-E-fasciculatus_F_contig16185:153..3361622928082.09622-CDS-E-fasciculatus_F_contig16185:153..336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16185 154..336 +
1695995816.2795238-CDS-E-fasciculatus_F_contig16185:153..3361695995816.2795238-CDS-E-fasciculatus_F_contig16185:153..336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16185 154..336 +
1622928082.1071565-CDS-E-fasciculatus_F_contig16185:789..10081622928082.1071565-CDS-E-fasciculatus_F_contig16185:789..1008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16185 790..1008 +
1695995816.2944074-CDS-E-fasciculatus_F_contig16185:789..10081695995816.2944074-CDS-E-fasciculatus_F_contig16185:789..1008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16185 790..1008 +
1622928082.123113-CDS-E-fasciculatus_F_contig16185:1461..18871622928082.123113-CDS-E-fasciculatus_F_contig16185:1461..1887Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16185 1462..1887 +
1695995816.3031828-CDS-E-fasciculatus_F_contig16185:1461..18871695995816.3031828-CDS-E-fasciculatus_F_contig16185:1461..1887Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16185 1462..1887 +
1622928082.1405334-CDS-E-fasciculatus_F_contig16185:2214..23641622928082.1405334-CDS-E-fasciculatus_F_contig16185:2214..2364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16185 2215..2364 +
1695995816.312136-CDS-E-fasciculatus_F_contig16185:2214..23641695995816.312136-CDS-E-fasciculatus_F_contig16185:2214..2364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16185 2215..2364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16185.4216.1

>prot_E-fasciculatus_F_contig16185.4216.1 ID=prot_E-fasciculatus_F_contig16185.4216.1|Name=mRNA_E-fasciculatus_F_contig16185.4216.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=326bp
GAGAGGSSSGPVNAPPAPHPGGGGVPRVDTNSGAVPSEGAGAGAAGGADG
AGSGESSLKREFVGGMMNGAPPNASPRGSAAAAPTGGDSRVAVAASTASS
PPSLSLSTSPRPRSASSGGGATMRLQSLADLATKELQHMYEVDEADTGTH
NRRHHHHNRSLSNGTPPPPSGFSPKRHLSPRLSGGSGGGRGVSALSSAAA
AVASCSSPSAPAARAAPSHHHHLRERGVPRSRHERAEEEEEEEEEMRAAA
RAASGRGRRHRPRSVSMPEGMELQARAWSGGYSSGRRKGGRIDSIKEELE
VTLALAFCLRLAFAAAAAAAAVVVGP
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mRNA from alignment at E-fasciculatus_F_contig16185:154..2364+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16185.4216.1 ID=mRNA_E-fasciculatus_F_contig16185.4216.1|Name=mRNA_E-fasciculatus_F_contig16185.4216.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2211bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16185:154..2364+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGCCGGCGCCGGCGGAAGTAGCAGCGGCCCCGTTAACGCACCGCCCGC
GCCACACCCCGGCGGCGGAGGCGTTCCTCGCGTCGACACGAACAGCGGAG
CGGTCCCGTCGGAGGGAGCGGGCGCCGGAGCCGCGGGGGGGGCTGACGGA
GCTGGCTCCGGGGAATCGTCCCTGAAGCGCGAGGTAATAAAATACATCGG
AGGTCTCTCCTTTTTTTTTGTGCGTGTGCTTGTTCGTGACGTGGCTTGAA
CGCCTGCTTGGGAGTTTTTTGCTGACATGGTTCTAGGCGTGTGCCATCGG
GATGTCTCTGTTGTAGTGTGTAGACCCTCTAGTCTAGTTGTTTGGGTGGA
GGAGTGGCGCGATATTGTTGTTTTCGTGGTTTTCCGCCTGCCCTCCTGCG
CCCTGTAAGCCCCCCCCCCCCCCCCCCCCCCCCCATTTTTTTTTTTGTGA
AATCTTCCCGCATCCTTAACGTTGTCAACTAAGAAACGTGTATTTGTGCC
GAACAGGGTATGTCAGTGTGCTTCAGTCACATCCATATGCCCCTGTCCCG
CAGAGAGCAGTGTGTTGCCAACAATTTTCCCTCATCGGCCATTTTTTTTT
TACTGTTCTGGTCTTTTTCGGGCCTCTGCTTTTCAGTTCGTCGGCGGGAT
GATGAACGGAGCGCCGCCGAACGCTTCGCCTCGCGGCTCCGCTGCCGCCG
CTCCTACCGGCGGGGACTCGAGGGTGGCGGTGGCAGCATCTACCGCCTCG
TCGCCGCCGTCGTTATCGTTGTCGACATCCCCTCGCCCCCGAAGCGCTTC
CAGCGGCGGGGGAGCGACCATGCGGCTGCAGTCGCTCGCGGACCTCGCGA
CGAAGGTATGAAATTATGCAGACACCACTCTGCTGCTGCTGATGCTGCTG
CTGTTGGCTGTTTGTCCCCGGCGGGATATATGTGATGGGCGTGTTTGGCA
AAAGCGGTATGTGTTGCCCCACTGCTGCTGTGCCGAAAGTCTACTGGCGA
AGCTTGGATGGATCGCGGACCTGGCCATAGGATGGATGATGCAGAACACC
GCTGCTGTTGGTGTTTTTGCCCGGGATTTGGTATGCATACGCGTGTTCAC
CTTTTTCGTGTTGTCCTGCTGCCGTCAATTCCAAAAGAGTGTATTGTACA
CTGGCGAACATTGGATTTGCATAGCCTCTTTGTAATCTCACCACGCAGGT
AGAGGTTGCTTGCTTTTTTTCCCCGGTGGGCTGCTACTTGCTGCACCACA
AGCGAAATATGCTGGCGTTACACGCTGCTTCCCCGCCTTCCCTCCATCGG
TCCACCAGGAACTCCAACACATGTACGAGGTCGACGAGGCCGACACGGGT
ACTCACAACCGCCGCCACCACCACCACAACCGCAGCCTCAGCAACGGAAC
CCCTCCCCCACCCTCGGGATTTTCTCCGAAACGGCACTTATCTCCCCGCC
TTTCCGGCGGCAGCGGCGGCGGCAGAGGCGTTTCTGCCCTGTCGTCGGCA
GCGGCGGCGGTGGCATCGTGTTCGTCGCCGTCGGCGCCTGCGGCGCGCGC
TGCCCCCAGTCACCACCACCACTTGCGGGAGAGAGGGGTCCCCCGCTCCC
GCCACGAGCGGGCCGAGGAGGAGGAGGAAGAGGAGGAGGAAATGCGGGCC
GCCGCCCGGGCCGCCAGCGGGCGGGGGAGGCGACACCGCCCCCGGTCGGT
GTCGATGCCGGAGGGGATGGAGCTCCAGGCCAGGGTGAGTTTCGCTTATT
TAGTCTCGCTCGGCAGTGTGGTGCAACCAGCGTCCTGTAGTATTCAAGTT
AGTTTCAGGGCGCTTGAATGTACTCAAGTTAGTTTCAGGGCGCTGATTGC
ACCACAGCAGGCACGGGGGGTTCCTGAAGAGCAGGGAGGTTTGGGTTTTG
GGTCCTGTTGTCGATCTGCCTGCTGCTGGATTGTTGGTTGTGGCTGTTGC
TGTGGAGCTGTGGCTCGGATCGTTCTTCTTCCCCGTCAGGNNNNNNNNNN
CCCCCCCTCACCATGCCTCCTTATGCCTGCTTGTGACGCTGTGGTGTGGT
TCGTGGGACAGGCGTGGTCGGGAGGCTACTCGTCCGGAAGGAGGAAGGGC
GGACGGATCGACTCCATCAAGGAAGAGCTCGAGGTAACCCTCGCCCTTGC
CTTTTGTCTTCGCCTTGCGTTTGCCGCCGCCGCTGCTGCTGCTGCGGTTG
TTGTTGGTCCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16185:154..2364+

>mRNA_E-fasciculatus_F_contig16185.4216.1 ID=mRNA_E-fasciculatus_F_contig16185.4216.1|Name=mRNA_E-fasciculatus_F_contig16185.4216.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1956bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16185:154..2364+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGCCGGCGCCGGCGGAAGTAGCAGCGGCCCCGTTAACGCACCGCCCGC
GCCACACCCCGGCGGCGGAGGCGTTCCTCGCGTCGACACGAACAGCGGAG
CGGTCCCGTCGGAGGGAGCGGGCGCCGGAGCCGCGGGGGGGGCTGACGGA
GCTGGCTCCGGGGAATCGTCCCTGAAGCGCGAGGGCGCCGGCGCCGGCGG
AAGTAGCAGCGGCCCCGTTAACGCACCGCCCGCGCCACACCCCGGCGGCG
GAGGCGTTCCTCGCGTCGACACGAACAGCGGAGCGGTCCCGTCGGAGGGA
GCGGGCGCCGGAGCCGCGGGGGGGGCTGACGGAGCTGGCTCCGGGGAATC
GTCCCTGAAGCGCGAGTTCGTCGGCGGGATGATGAACGGAGCGCCGCCGA
ACGCTTCGCCTCGCGGCTCCGCTGCCGCCGCTCCTACCGGCGGGGACTCG
AGGGTGGCGGTGGCAGCATCTACCGCCTCGTCGCCGCCGTCGTTATCGTT
GTCGACATCCCCTCGCCCCCGAAGCGCTTCCAGCGGCGGGGGAGCGACCA
TGCGGCTGCAGTCGCTCGCGGACCTCGCGACGAAGTTCGTCGGCGGGATG
ATGAACGGAGCGCCGCCGAACGCTTCGCCTCGCGGCTCCGCTGCCGCCGC
TCCTACCGGCGGGGACTCGAGGGTGGCGGTGGCAGCATCTACCGCCTCGT
CGCCGCCGTCGTTATCGTTGTCGACATCCCCTCGCCCCCGAAGCGCTTCC
AGCGGCGGGGGAGCGACCATGCGGCTGCAGTCGCTCGCGGACCTCGCGAC
GAAGGAACTCCAACACATGTACGAGGTCGACGAGGCCGACACGGGTACTC
ACAACCGCCGCCACCACCACCACAACCGCAGCCTCAGCAACGGAACCCCT
CCCCCACCCTCGGGATTTTCTCCGAAACGGCACTTATCTCCCCGCCTTTC
CGGCGGCAGCGGCGGCGGCAGAGGCGTTTCTGCCCTGTCGTCGGCAGCGG
CGGCGGTGGCATCGTGTTCGTCGCCGTCGGCGCCTGCGGCGCGCGCTGCC
CCCAGTCACCACCACCACTTGCGGGAGAGAGGGGTCCCCCGCTCCCGCCA
CGAGCGGGCCGAGGAGGAGGAGGAAGAGGAGGAGGAAATGCGGGCCGCCG
CCCGGGCCGCCAGCGGGCGGGGGAGGCGACACCGCCCCCGGTCGGTGTCG
ATGCCGGAGGGGATGGAGCTCCAGGCCAGGGAACTCCAACACATGTACGA
GGTCGACGAGGCCGACACGGGTACTCACAACCGCCGCCACCACCACCACA
ACCGCAGCCTCAGCAACGGAACCCCTCCCCCACCCTCGGGATTTTCTCCG
AAACGGCACTTATCTCCCCGCCTTTCCGGCGGCAGCGGCGGCGGCAGAGG
CGTTTCTGCCCTGTCGTCGGCAGCGGCGGCGGTGGCATCGTGTTCGTCGC
CGTCGGCGCCTGCGGCGCGCGCTGCCCCCAGTCACCACCACCACTTGCGG
GAGAGAGGGGTCCCCCGCTCCCGCCACGAGCGGGCCGAGGAGGAGGAGGA
AGAGGAGGAGGAAATGCGGGCCGCCGCCCGGGCCGCCAGCGGGCGGGGGA
GGCGACACCGCCCCCGGTCGGTGTCGATGCCGGAGGGGATGGAGCTCCAG
GCCAGGGCGTGGTCGGGAGGCTACTCGTCCGGAAGGAGGAAGGGCGGACG
GATCGACTCCATCAAGGAAGAGCTCGAGGTAACCCTCGCCCTTGCCTTTT
GTCTTCGCCTTGCGTTTGCCGCCGCCGCTGCTGCTGCTGCGGTTGTTGTT
GGTCCTGCGTGGTCGGGAGGCTACTCGTCCGGAAGGAGGAAGGGCGGACG
GATCGACTCCATCAAGGAAGAGCTCGAGGTAACCCTCGCCCTTGCCTTTT
GTCTTCGCCTTGCGTTTGCCGCCGCCGCTGCTGCTGCTGCGGTTGTTGTT
GGTCCT
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