mRNA_E-fasciculatus_F_contig16183.4215.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16183.4215.1
Unique NamemRNA_E-fasciculatus_F_contig16183.4215.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16183.4215.1 vs. uniprot
Match: D7FH80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.740e-16
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:  112 PDGWGAAVTNSDTTKLAELVMFWSGSKPERALSVLRNCVSLMEKEVAFS 258
            PD WG AV + D TKLAELV+ WSG KPERALSV+R+CVS++EKEVA S
Sbjct:   12 PDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALS 60
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16183.4215.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.590e-12
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:  112 PDGWGAAVTNSDTTKLAELVMFWSGSKPERALSVLRNCVSLMEKEVAFS 258
            PD WG AV   D TKLAELV+ WSGS+PE ALS+LR CV L+E+E AFS
Sbjct:   67 PDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFS 115
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16183.4215.1 vs. uniprot
Match: D7FTA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.020e-11
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  112 PDGWGAAVTNSDTTKLAELVMFWSGSKPERALSVLRNCVSLMEKEVAFSA 261
            PD WG+AV + D T LAELV+ W G  P  ALS+LR CV+++EKEVA SA
Sbjct:   12 PDAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSA 61
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16183.4215.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 3.140e-9
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  124 GAAVTNSDTTKLAELVMFWSGSKPERALSVLRNCVSLMEKEVAFSA 261
            G+AV +   TKLAELV+ WS SKPERALS+ R CVSL+EKE A SA
Sbjct:   71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSA 116
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16183.4215.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-8
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   55 REVVVSVPASSPLQSLPTTPDGWGAAVTNSDTTKLAELVMFWSGSKPERALSVLRNCVSLMEKEVAFSA 261
            RE  V VP     Q L      W AA      T+LA+LV+ WSGS+PE ALS+L++CVSL+EKE AFSA
Sbjct:   36 RETSVRVP-----QGLMNGARPWRAA------TRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSA 93
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16183.4215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FH80_ECTSI2.740e-1671.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE1.590e-1267.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTA8_ECTSI1.020e-1160.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL5_ECTSI3.140e-967.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI3.330e-852.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16183contigE-fasciculatus_F_contig16183:1792..2437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size265
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928082.048076-CDS-E-fasciculatus_F_contig16183:1793..19391622928082.048076-CDS-E-fasciculatus_F_contig16183:1793..1939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16183 1794..1939 -
1695995816.2590003-CDS-E-fasciculatus_F_contig16183:1793..19391695995816.2590003-CDS-E-fasciculatus_F_contig16183:1793..1939Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16183 1794..1939 -
1622928082.059649-CDS-E-fasciculatus_F_contig16183:2322..24371622928082.059649-CDS-E-fasciculatus_F_contig16183:2322..2437Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16183 2323..2437 -
1695995816.269195-CDS-E-fasciculatus_F_contig16183:2322..24371695995816.269195-CDS-E-fasciculatus_F_contig16183:2322..2437Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16183 2323..2437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16183.4215.1prot_E-fasciculatus_F_contig16183.4215.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16183 1794..2437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16183.4215.1

>prot_E-fasciculatus_F_contig16183.4215.1 ID=prot_E-fasciculatus_F_contig16183.4215.1|Name=mRNA_E-fasciculatus_F_contig16183.4215.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=87bp
SKPERALSILKDCVSVLEREVVVSVPASSPLQSLPTTPDGWGAAVTNSDT
TKLAELVMFWSGSKPERALSVLRNCVSLMEKEVAFSA
back to top

mRNA from alignment at E-fasciculatus_F_contig16183:1792..2437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16183.4215.1 ID=mRNA_E-fasciculatus_F_contig16183.4215.1|Name=mRNA_E-fasciculatus_F_contig16183.4215.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=646bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16183:1792..2437- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAAAGCCCGAGCGGGCTCTGTCGATTCTAAAAGACTGCGTTTCTGTGCT
GGAGAGGGAGGTTGTGGTTTCAGTTCCGGCTTCTTCCCCCCTTCAATCGC
TCCCGACTACGCCTGGTGGGTTCCTTTTCGTCGTTTAGAGTTCTTGAATT
GGCCTGCACCCTGACCGACTTGAAGAAATGCCACGGGTCTTGCATGGTGG
CTGAGAACTGCTTTGTGTTCTTTCCTAGCAGTGAGGCGTGCAGAGGGGTG
CTCAGAGCGTAGCGCCGGTCTTGTGATATGATACCATCTCGTCATGTATC
CCTGGCCGTTTTGTTGATTCCGTCCGATAGTTGAATAACACGACTGAGTC
CAAATTGTGCAACGAATCATGGACCTTTACGAGGAAACAGGTGTGTTTGA
ATCTCTTTCGAGGGAGATCGCGGTAATCGGAAGTAGGCTTCGGCGCATCC
GAAACCACCACGTAGCTTTGACAACACCATATCATTATGATTCTGCAGAT
GGATGGGGCGCGGCCGTGACCAACAGCGACACTACTAAGCTAGCTGAGCT
GGTGATGTTTTGGAGCGGTTCAAAGCCCGAGCGTGCTCTGTCCGTTCTGA
GGAACTGCGTTTCTTTGATGGAGAAGGAGGTTGCGTTTTCAGCTCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16183:1792..2437-

>mRNA_E-fasciculatus_F_contig16183.4215.1 ID=mRNA_E-fasciculatus_F_contig16183.4215.1|Name=mRNA_E-fasciculatus_F_contig16183.4215.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16183:1792..2437- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCAAAGCCCGAGCGGGCTCTGTCGATTCTAAAAGACTGCGTTTCTGTGCT
GGAGAGGGAGGTTGTGGTTTCAGTTCCGGCTTCTTCCCCCCTTCAATCGC
TCCCGACTACGCCTGTCAAAGCCCGAGCGGGCTCTGTCGATTCTAAAAGA
CTGCGTTTCTGTGCTGGAGAGGGAGGTTGTGGTTTCAGTTCCGGCTTCTT
CCCCCCTTCAATCGCTCCCGACTACGCCTGATGGATGGGGCGCGGCCGTG
ACCAACAGCGACACTACTAAGCTAGCTGAGCTGGTGATGTTTTGGAGCGG
TTCAAAGCCCGAGCGTGCTCTGTCCGTTCTGAGGAACTGCGTTTCTTTGA
TGGAGAAGGAGGTTGCGTTTTCAGCTATGGATGGGGCGCGGCCGTGACCA
ACAGCGACACTACTAAGCTAGCTGAGCTGGTGATGTTTTGGAGCGGTTCA
AAGCCCGAGCGTGCTCTGTCCGTTCTGAGGAACTGCGTTTCTTTGATGGA
GAAGGAGGTTGCGTTTTCAGCT
back to top