mRNA_E-fasciculatus_F_contig16180.4213.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16180.4213.1
Unique NamemRNA_E-fasciculatus_F_contig16180.4213.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Match: A0A6H5JIF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIF2_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 2.090e-90
Identity = 168/223 (75.34%), Postives = 172/223 (77.13%), Query Frame = 1 
Query:    1 QGCVSAEVAMSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYDCRWPPYASHVAFELWSKPPAGQGDKDPRKRGLLLGAGENGSGSEDADSRRALAEEGNDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAYVRVTFQGKPITHHITDCGPFEG*VGR 669
            +GCVS EVAM VM+EADRQMCLRYYGA+GGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYDCRWPPYASHVAFELWSKPPAGQGDKDP KRGLL G GENGSG EDA SRRALAEEGNDA          XXXXXXXXXXX                                +AYVRVTFQGKPITHHITDCGPFEG  GR
Sbjct:  470 KGCVSPEVAMDVMLEADRQMCLRYYGADGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYDCRWPPYASHVAFELWSKPPAGQGDKDPPKRGLL-GGGENGSGGEDATSRRALAEEGNDAPAGGDGAAEQXXXXXXXXXXXPNSPSQERILLSGDAQEGASDAGVEGGKEEE-DAYVRVTFQGKPITHHITDCGPFEGPYGR 690
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Match: D8LH47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH47_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 2.040e-89
Identity = 188/223 (84.30%), Postives = 190/223 (85.20%), Query Frame = 1 
Query:    1 QGCVSAEVAMSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYDCRWPPYASHVAFELWSKPPAGQGDKDPRKRGLLLGAGENGSGSEDADSRRALAEEGNDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAYVRVTFQGKPITHHITDCGPFEG*VGR 669
            +GCVS EVAM VMVEADRQMCLRYYGA+GGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYDCRWPPYASHVAFELWSKPPAGQ DKDP  RGLL G GENG G EDA SRRALAEEGN A   XXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXX          EAYVRVTFQGKPITHHITDCGPFEG  GR
Sbjct:  284 KGCVSPEVAMDVMVEADRQMCLRYYGADGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYDCRWPPYASHVAFELWSKPPAGQEDKDPPNRGLL-GGGENGRGGEDAASRRALAEEGNGAAAGXXXXXXXXXXXXXXXXXXXXXXXQEVIPPAXXXXXXXXXXGEAGGKEE--EAYVRVTFQGKPITHHITDCGPFEGPYGR 503
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Match: A0A835YUT4_9STRA (Histidine phosphatase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT4_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.620e-27
Identity = 62/142 (43.66%), Postives = 89/142 (62.68%), Query Frame = 1 
Query:    7 CVSAEVAMSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPT----KFALFSGHDTVVAPLLAAFGAYDCRWPPYASHVAFELWSKPP-AGQGDKDPR-KRGLLLGAGENGSGSEDADSRRALAEEG 414
            C+  ++A ++M E+DR++C+ Y G  GG  ++ LS+YPF  E+L NM  A +   P     K AL+SGHDTV+AP+LAA GAYDCRWPPYASHV  ELW+ P  +G+  ++    R L   A E+  G+   +  + + E G
Sbjct:  457 CMGEQLARALMAESDRRLCMEYLGVQGGFSASRLSIYPFMMELLGNMEAAATAAEPPAQAPKLALYSGHDTVIAPVLAALGAYDCRWPPYASHVRIELWTGPACSGENSRNGAGARALQEVAAEHSDGAASEEGDKGVVEPG 598
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Match: A0A813K5C1_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K5C1_POLGL)

HSP 1 Score: 103 bits (256), Expect = 1.350e-20
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    4 GCVSAEVAMSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYD--CRWPPYASHVAFELWSKP 300
            GCV  E+A +V   AD   C R+ G+ GG  + +L+ YPF  E+L+ ++ A + D+    A+FSGHDTV+APLL+A GAY   C WP YAS +AFEL+S+P
Sbjct:  347 GCVQPELANAVAQRADEFYCERFSGSEGGEVATSLAFYPFLRELLSLLKEATTLDAAPSLAVFSGHDTVIAPLLSALGAYHRFCEWPSYASRIAFELYSRP 447
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Match: A0A7S4WC98_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WC98_9DINO)

HSP 1 Score: 102 bits (255), Expect = 1.640e-20
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    4 GCVSAEVAMSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYD---CRWPPYASHVAFELWSKP 300
            GC    +A+S+   AD   C R+ GA GG  +  LS YPF  E+LT +  A    +P   A+FSGHDTV+AP+L+A GAY    CRWPPY S +A EL+  P
Sbjct:  329 GCADRALALSIAHRADELYCTRFAGAEGGARATELSFYPFIREMLTYLEAAAVAKAPPALAVFSGHDTVIAPVLSALGAYHGQLCRWPPYGSRIALELYRAP 430
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Match: A0A813FP23_POLGL (Pyruvate kinase n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FP23_POLGL)

HSP 1 Score: 103 bits (256), Expect = 3.180e-20
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    4 GCVSAEVAMSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYD--CRWPPYASHVAFELWSKP 300
            GCV  E+A +V   AD   C R+ G+ GG  + +L+ YPF  E+L+ ++ A + D+    A+FSGHDTV+APLL+A GAY   C WP YAS +AFEL+S+P
Sbjct: 2241 GCVQPELANAVAQRADEFYCERFSGSEGGEVATSLAFYPFLRELLSLLKEATTLDAAPSLAVFSGHDTVIAPLLSALGAYHRFCEWPSYASRIAFELYSRP 2341
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Match: A0A7S4AXU8_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4AXU8_CHRCT)

HSP 1 Score: 98.6 bits (244), Expect = 4.860e-19
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:    1 QGCVSAEVAMSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYD-----CRWPPYASHVAFELW 291
            +GCVS  +   V  +AD   C R+ GA+GG  ++ LS+ P    I + +   LS  +  + ALFSGHDTVVAPLLAA  A       CRWPPYASHVAFE+W
Sbjct:  317 RGCVSPSLVTRVWRDADSVYCRRFAGADGGLAASKLSMLPLLRTITSKLTPMLSSPTAPRIALFSGHDTVVAPLLAALSALSAAPGACRWPPYASHVAFEVW 418
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Match: A0A7R9ZXQ8_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7R9ZXQ8_9DINO)

HSP 1 Score: 97.1 bits (240), Expect = 1.740e-18
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:    4 GCVSAEVAMSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYD---CRWPPYASHVAFELWSKPPAG 309
            GC   ++A ++   AD   C R+ GA GG  +  LS YPF  E+L  ++ A    S    A+FSGH+TV+APLL+A G Y    CRWPPYAS ++FEL+  P  G
Sbjct:  348 GCADHQLAEALAHRADEYYCARFAGAEGGAVATQLSFYPFLHEVLGLLQEAAPAGSVPSLAVFSGHNTVIAPLLSALGVYWGRLCRWPPYASRISFELYRSPQVG 452
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Match: A0A7S4SD88_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SD88_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 7.900e-17
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    4 GCVSAEVAMSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYD---CRWPPYASHVAFELWSKP 300
            GC    +A+ +   AD   C R+ GA GG  +  LS Y F  E+LT +  A    +P   A+FSGHDTV+AP+L+A G Y    CRWPPY S +A EL+  P
Sbjct:  328 GCAGRPLALLLAHRADELYCARFAGAEGGARATQLSFYLFIREMLTYLDAAAVVGAPPVLAIFSGHDTVIAPVLSALGVYRGRLCRWPPYGSRIALELYRAP 429
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Match: A0A7S4ECP9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECP9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.340e-14
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 QGCVSAEVAMSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPTKFALFSGHDTVVAPLLAAFGAYDCRWPPYASHVAFEL 288
            QGCV+   A ++   AD+    RY G +GG  ++ L ++PF +E+L N +   S  S  +  L++GHDTVVAPLLAA G +D +WPP AS + FEL
Sbjct:  269 QGCVTGSKAEALFRLADKFYYGRYNGNDGGRAASRLGMHPFLSELLRNFKDD-SESSEKRLRLYAGHDTVVAPLLAALGVFDGKWPPLASRIVFEL 363
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16180.4213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIF2_9PHAE2.090e-9075.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH47_ECTSI2.040e-8984.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUT4_9STRA6.620e-2743.66Histidine phosphatase superfamily n=1 Tax=Tribonem... [more]
A0A813K5C1_POLGL1.350e-2048.51Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S4WC98_9DINO1.640e-2047.06Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A813FP23_POLGL3.180e-2048.51Pyruvate kinase n=1 Tax=Polarella glacialis TaxID=... [more]
A0A7S4AXU8_CHRCT4.860e-1949.02Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7R9ZXQ8_9DINO1.740e-1844.76Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A7S4SD88_9DINO7.900e-1744.12Hypothetical protein n=2 Tax=Alexandrium monilatum... [more]
A0A7S4ECP9_9STRA1.340e-1444.79Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16180contigE-fasciculatus_F_contig16180:581..2759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.2
Seed ortholog evalue1.3e-71
Seed eggNOG ortholog2880.D8LH47
Preferred namePXYLP1
KEGG koko:K15116,ko:K21403
KEGG TC2.A.29.10.4
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010559,GO:0010560,GO:0010604,GO:0010908,GO:0010909,GO:0012505,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0019538,GO:0030166,GO:0030203,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0034645,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0050650,GO:0050654,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0052642,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902730,GO:1903018,GO:1903020,GO:2000112
EggNOG free text desc.regulation of heparan sulfate proteoglycan biosynthetic process
EggNOG OGsKOG3672@1,KOG3672@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistidine phosphatase superfamily
Ec32 orthologEc-24_000520.1
Exons2
Model size1072
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16180.4213.1prot_E-fasciculatus_F_contig16180.4213.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16180 608..2347 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.9055874-UTR-E-fasciculatus_F_contig16180:580..6071622928081.9055874-UTR-E-fasciculatus_F_contig16180:580..607Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16180 581..607 +
1695995816.194778-UTR-E-fasciculatus_F_contig16180:580..6071695995816.194778-UTR-E-fasciculatus_F_contig16180:580..607Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16180 581..607 +
1622928081.9503984-UTR-E-fasciculatus_F_contig16180:2347..27591622928081.9503984-UTR-E-fasciculatus_F_contig16180:2347..2759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16180 2348..2759 +
1695995816.2240179-UTR-E-fasciculatus_F_contig16180:2347..27591695995816.2240179-UTR-E-fasciculatus_F_contig16180:2347..2759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16180 2348..2759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.9214005-CDS-E-fasciculatus_F_contig16180:607..7301622928081.9214005-CDS-E-fasciculatus_F_contig16180:607..730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16180 608..730 +
1695995816.2058594-CDS-E-fasciculatus_F_contig16180:607..7301695995816.2058594-CDS-E-fasciculatus_F_contig16180:607..730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16180 608..730 +
1622928081.9369454-CDS-E-fasciculatus_F_contig16180:1837..23471622928081.9369454-CDS-E-fasciculatus_F_contig16180:1837..2347Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16180 1838..2347 +
1695995816.2140505-CDS-E-fasciculatus_F_contig16180:1837..23471695995816.2140505-CDS-E-fasciculatus_F_contig16180:1837..2347Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16180 1838..2347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16180.4213.1

>prot_E-fasciculatus_F_contig16180.4213.1 ID=prot_E-fasciculatus_F_contig16180.4213.1|Name=mRNA_E-fasciculatus_F_contig16180.4213.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=211bp
MSVMVEADRQMCLRYYGANGGGESAALSLYPFTTEILTNMRRALSGDSPT
KFALFSGHDTVVAPLLAAFGAYDCRWPPYASHVAFELWSKPPAGQGDKDP
RKRGLLLGAGENGSGSEDADSRRALAEEGNDAAAGEEAATEQGGGSAESG
AGSANNPSKESTPPAGDAQGGASDADEEEGGKEEEEAYVRVTFQGKPITH
HITDCGPFEG*
back to top

mRNA from alignment at E-fasciculatus_F_contig16180:581..2759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16180.4213.1 ID=mRNA_E-fasciculatus_F_contig16180.4213.1|Name=mRNA_E-fasciculatus_F_contig16180.4213.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2179bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16180:581..2759+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGCTGCGTTTCCGCGGAGGTTGCCATGAGCGTGATGGTGGAGGCAGA
CCGGCAGATGTGCTTGAGGTACTACGGGGCAAACGGTGGAGGAGAATCCG
CCGCATTGTCCCTGTACCCCTTCACGACAGAGATTCTCACCAACATGAGG
GTGAGAAGAGAGAGACCTAGACTACACTACACGACTGTACGTTGTATGTA
TCTAGTCGGAATCGAGGCGTCGTGTTGAGGTGTTGAGATGCAAGGCTTGA
TTTCGTGAGTTGCATGCGATGGGGAAGTGTGCATCTAACTGTAAGGCATG
AGCGGCAACACAGCGCGCTACTGCTGTAACGAGCCTTGCTAGTATAGGCG
GTACACATATCTCGTTCGTTGTTGTTGTTTCTGTCTTGACAATACGACAA
ACGTAGGGTATACCTGTCTGCTGTGCTCAGTACTGCTGTACCTCCTGACA
TCGGTACCGGTTCATCCGACCCGGAACTAAAGCAGAAAGAAACGGACTCA
GAACATCATCAAGACGTGTGCAACCCGCGGCAGCTGTTATAGTTGTTCGT
CGAGTAGAACTGAGTGTTTCATTCAGCAATTGCTCCTAAGTGTTGTAATT
ATCTTTTTTGACCCCGCTGATTCTTCCCGTTGAGAAGCTAGATTCTTGGG
GTGCTGTAACCGAAACAAAGTCTAACGTAGCTAGTCGGCCGAGGAGCTTA
GCAGCTCTTTCGTCGAGAGCAGCGAGTATTTGGTGCTAGAAGTGGCGAGG
CTGATGCGGTGTGACGCGAGCTACCTTTCGCCTCGCAGGGATGTGGCATG
TGGCAATTGCACAACCAAACGAACGTACTATAGTAATACTAGAAGCGGAG
TTTCTTCGCCGCTTACAATAGCGGTTTCGACAACGGAGAACCGTTCTTCA
TCTTCATCTGTCTATGTGGCAATCAATCTACGGTACGGTGGTGTTTCAGC
GAGATACTGAATAAACAAACCCTCACATATAGTACACAAGATAATGAAGT
ACGTTGCCTTTGGCCCGCGTGGCTGAATCTTCGCTGTAAGGAATTGATCA
TTCTAAGTCGTATCCTGAGTGAGTGAGTGAATGAGTCCTGCTGCTGTGAT
TTAACGTTTGCTTTCTGAGATGACGAAGGCGTCTCCGTCTCATGCTTGGC
ACCGCGCACCCTCCCTGCCCATGCGTATACACTTGATTTAGTCGAACGCA
CACCCTTATTTTAATTTTTTATTTGGCGTTCCATTCCTGCCTCGGTCAAC
ACCACAGCGAGCGCTGAGCGGCGATAGCCCCACAAAGTTCGCCTTGTTCT
CGGGACACGACACCGTGGTGGCCCCCCTCCTGGCGGCGTTCGGGGCCTAC
GACTGCCGCTGGCCGCCTTACGCATCTCACGTAGCCTTCGAGCTCTGGTC
CAAACCTCCAGCGGGGCAAGGAGACAAGGACCCTCGAAAAAGAGGGCTCC
TCCTGGGCGCCGGAGAGAACGGTAGCGGCAGCGAGGACGCTGATTCGAGG
AGGGCACTGGCGGAGGAAGGGAACGACGCTGCTGCTGGGGAAGAAGCAGC
GACTGAACAAGGCGGGGGCTCCGCAGAATCGGGCGCCGGTAGCGCTAACA
ACCCGTCCAAGGAAAGCACCCCCCCGGCTGGCGATGCCCAAGGAGGCGCT
TCTGATGCAGACGAGGAGGAGGGGGGCAAGGAGGAAGAGGAGGCTTACGT
GCGAGTCACGTTCCAGGGGAAGCCGATAACGCACCACATCACGGACTGCG
GTCCCTTCGAGGGGTGAGTGGGTCGGACCTGCTAAACTGCTAGACGACGG
CTTCGGTCCGGTCGGCGACAAGGGAGCGCAGTGTAAGAGTTTGGTTTTGC
GTGTTTGTGGGACAGGAAGCCTTGTTGTTCGTTCGACAGGGGTCGATATT
TTTGGCAGTTTTTGTCGTTTTTTGGGCTGCTGTGGTTCCAGGGCACGGGG
TGATGGGTCCAACAATGGCAATGGCAATGAAACCTTCTGTGTCAGAGATT
CCGACCGCTTGCTCGTTGGTCAGTCGTTTCCCAGATTCGTTTCTTTTCAC
AGCGTCAAGCTGCAGCAGTCAAGTCAGTCCAACTTCAGCACCAGGCGCCA
GGCGAATCGTGGCGGACGTGCGTGCTGCGTGATCCCCGCAAGGGCTCTGT
TTCTCGTGCCCCAAGAGCAAGAAACGGAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16180:581..2759+

>mRNA_E-fasciculatus_F_contig16180.4213.1 ID=mRNA_E-fasciculatus_F_contig16180.4213.1|Name=mRNA_E-fasciculatus_F_contig16180.4213.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16180:581..2759+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCGTGATGGTGGAGGCAGACCGGCAGATGTGCTTGAGGTACTACGG
GGCAAACGGTGGAGGAGAATCCGCCGCATTGTCCCTGTACCCCTTCACGA
CAGAGATTCTCACCAACATGAGGATGAGCGTGATGGTGGAGGCAGACCGG
CAGATGTGCTTGAGGTACTACGGGGCAAACGGTGGAGGAGAATCCGCCGC
ATTGTCCCTGTACCCCTTCACGACAGAGATTCTCACCAACATGAGGCGAG
CGCTGAGCGGCGATAGCCCCACAAAGTTCGCCTTGTTCTCGGGACACGAC
ACCGTGGTGGCCCCCCTCCTGGCGGCGTTCGGGGCCTACGACTGCCGCTG
GCCGCCTTACGCATCTCACGTAGCCTTCGAGCTCTGGTCCAAACCTCCAG
CGGGGCAAGGAGACAAGGACCCTCGAAAAAGAGGGCTCCTCCTGGGCGCC
GGAGAGAACGGTAGCGGCAGCGAGGACGCTGATTCGAGGAGGGCACTGGC
GGAGGAAGGGAACGACGCTGCTGCTGGGGAAGAAGCAGCGACTGAACAAG
GCGGGGGCTCCGCAGAATCGGGCGCCGGTAGCGCTAACAACCCGTCCAAG
GAAAGCACCCCCCCGGCTGGCGATGCCCAAGGAGGCGCTTCTGATGCAGA
CGAGGAGGAGGGGGGCAAGGAGGAAGAGGAGGCTTACGTGCGAGTCACGT
TCCAGGGGAAGCCGATAACGCACCACATCACGGACTGCGGTCCCTTCGAG
GGGTGACGAGCGCTGAGCGGCGATAGCCCCACAAAGTTCGCCTTGTTCTC
GGGACACGACACCGTGGTGGCCCCCCTCCTGGCGGCGTTCGGGGCCTACG
ACTGCCGCTGGCCGCCTTACGCATCTCACGTAGCCTTCGAGCTCTGGTCC
AAACCTCCAGCGGGGCAAGGAGACAAGGACCCTCGAAAAAGAGGGCTCCT
CCTGGGCGCCGGAGAGAACGGTAGCGGCAGCGAGGACGCTGATTCGAGGA
GGGCACTGGCGGAGGAAGGGAACGACGCTGCTGCTGGGGAAGAAGCAGCG
ACTGAACAAGGCGGGGGCTCCGCAGAATCGGGCGCCGGTAGCGCTAACAA
CCCGTCCAAGGAAAGCACCCCCCCGGCTGGCGATGCCCAAGGAGGCGCTT
CTGATGCAGACGAGGAGGAGGGGGGCAAGGAGGAAGAGGAGGCTTACGTG
CGAGTCACGTTCCAGGGGAAGCCGATAACGCACCACATCACGGACTGCGG
TCCCTTCGAGGGGTGA
back to top