mRNA_E-fasciculatus_F_contig1618.4212.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1618.4212.1
Unique NamemRNA_E-fasciculatus_F_contig1618.4212.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1618.4212.1 vs. uniprot
Match: D8LJP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP3_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.770e-8
Identity = 39/61 (63.93%), Postives = 39/61 (63.93%), Query Frame = 1 
Query: 1108 MEEDLLRRQPNAMSVPSVAQGSSAPVPSXXXXXXSSPSSSLGALEPSRAIALHLKEARPVR 1290
            MEEDLL RQPNAMSV SVAQ                  SSLGAL PSR IALHLKEARPVR
Sbjct:    1 MEEDLLMRQPNAMSVASVAQ------------------SSLGALGPSRGIALHLKEARPVR 43
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1618.4212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJP3_ECTSI1.770e-863.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1618contigE-fasciculatus_F_contig1618:8552..11492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_002810.1
Exons3
Model size1434
Cds size1434
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1618.4212.1prot_E-fasciculatus_F_contig1618.4212.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1618 8552..11492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.831824-CDS-E-fasciculatus_F_contig1618:8551..97181622928081.831824-CDS-E-fasciculatus_F_contig1618:8551..9718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1618 8552..9718 +
1695995816.1698003-CDS-E-fasciculatus_F_contig1618:8551..97181695995816.1698003-CDS-E-fasciculatus_F_contig1618:8551..9718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1618 8552..9718 +
1622928081.8522358-CDS-E-fasciculatus_F_contig1618:10214..103971622928081.8522358-CDS-E-fasciculatus_F_contig1618:10214..10397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1618 10215..10397 +
1695995816.1778092-CDS-E-fasciculatus_F_contig1618:10214..103971695995816.1778092-CDS-E-fasciculatus_F_contig1618:10214..10397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1618 10215..10397 +
1622928081.864295-CDS-E-fasciculatus_F_contig1618:11408..114921622928081.864295-CDS-E-fasciculatus_F_contig1618:11408..11492Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1618 11409..11492 +
1695995816.1858263-CDS-E-fasciculatus_F_contig1618:11408..114921695995816.1858263-CDS-E-fasciculatus_F_contig1618:11408..11492Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1618 11409..11492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1618.4212.1

>prot_E-fasciculatus_F_contig1618.4212.1 ID=prot_E-fasciculatus_F_contig1618.4212.1|Name=mRNA_E-fasciculatus_F_contig1618.4212.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=478bp
MASTKGPQRKSPPRRSPRLAVLDQHPLAVPPTAAASPTAASSNKRSIEEV
RGSGSSGGGDGGNRSGDPAAIPEAKAYSVTRSGKRSRQQDIGNNGSVGRQ
VAAAATAAGAKSSATRLGKRNSHGPGEENNSNSGQPQVTDVAATAVGFNT
ATAGFKKTSAATSSSLDDECDKDSSGQPVFEAAGPVVKAPVARNPSVKIS
PDVDEESNTGSCCEEVLPSGGANASVAASGGEPQVAVAAPAAASASATTS
GERNISPGIDTGNEDVGQEQVVAAAPAVLAPKTSSGVRSSSQDCREKDSD
GEEVLEAAEAEVMPTSSRKSSIPDATKRASNSSTITTDTSTISPHMAILR
QVQADLCEAVYRCEELLGNMEEDLLRRQPNAMSVPSVAQGSSAPVPSPSP
SPPSSPSSSLGALEPSRAIALHLKEARPVRKVEPRERIFSQSSQTSVFWR
VGAAESKGPRAASSRTGCPRSLWWWWW*
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mRNA from alignment at E-fasciculatus_F_contig1618:8552..11492+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1618.4212.1 ID=mRNA_E-fasciculatus_F_contig1618.4212.1|Name=mRNA_E-fasciculatus_F_contig1618.4212.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2941bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1618:8552..11492+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCATCAACAAAGGGGCCGCAGCGAAAGTCCCCCCCGCGCCGATCGCC
GAGGCTCGCCGTGCTCGACCAACACCCACTAGCGGTACCACCAACAGCAG
CAGCATCACCCACAGCGGCGAGCTCGAACAAGAGGAGCATAGAAGAAGTC
CGTGGCAGTGGTAGCAGTGGTGGCGGTGATGGTGGCAACCGCAGTGGGGA
CCCGGCCGCTATACCCGAAGCCAAGGCCTACTCGGTGACAAGGTCAGGGA
AGAGAAGCAGGCAACAAGACATCGGCAACAACGGCAGCGTCGGCCGACAG
GTTGCTGCAGCAGCAACAGCGGCAGGAGCCAAATCTTCGGCGACACGGCT
CGGCAAGAGGAACAGCCATGGGCCCGGCGAAGAGAACAACAGCAACAGCG
GTCAACCTCAGGTTACCGATGTAGCGGCAACGGCAGTAGGGTTCAATACC
GCAACAGCAGGATTCAAAAAAACATCGGCGGCAACAAGTTCAAGCCTCGA
CGACGAGTGCGACAAAGACAGCAGCGGGCAACCTGTCTTCGAAGCAGCGG
GACCAGTGGTCAAAGCCCCGGTGGCAAGAAACCCGAGCGTGAAAATCAGC
CCAGACGTAGACGAGGAGAGCAACACCGGCAGCTGCTGCGAAGAGGTTCT
TCCATCGGGAGGAGCTAATGCCTCGGTGGCAGCAAGCGGCGGCGAGCCAC
AGGTTGCTGTAGCAGCACCAGCTGCAGCCAGCGCCTCGGCTACGACCTCC
GGTGAGAGGAACATAAGTCCGGGGATCGACACGGGCAACGAGGACGTCGG
CCAAGAACAGGTTGTTGCAGCAGCACCAGCAGTGTTAGCCCCGAAGACAA
GCTCCGGCGTGAGAAGCAGCAGCCAAGACTGCCGCGAGAAGGACAGCGAT
GGCGAAGAGGTCCTTGAAGCAGCAGAAGCCGAGGTCATGCCGACAAGCTC
GCGCAAGAGCAGCATCCCCGATGCCACAAAAAGGGCAAGCAACAGCAGTA
CTATCACGACCGACACCTCCACCATCAGCCCTCATATGGCGATCCTCCGG
CAGGTGCAAGCGGACCTATGCGAGGCTGTGTACAGGTGTGAAGAGCTGCT
GGGCAACATGGAGGAAGACCTGTTGAGGCGGCAGCCCAACGCCATGAGCG
TACCCAGCGTTGCCCAGGTAAAACTCCCATAGCCTCAAGCACTGCCCGTT
TTGTAGCAGAGTGTGATACACATCCCAAGAATCGTCGGGTTCCACCACTC
AACACCATGCTTTGTTCGTAGACCTCTCCCCGCCGCCGCCCTCTCTCTAC
GGCGCACTTCATATTTGTGGAGTTCGCAAATACTGGGGTGGAGCTCGAGT
TGGAGAGGGGCTCCGTGGAAACATGAGCAGGGGGACGAACAACAATAGCA
TGCTTGCACGAACAATGAGACTTGTAAACGATTGCAGAGGATACTTCCAG
CACGGAGAGAAGGAGAGGACAACCGCCCCCCTTTTCCTTCCCGATGACTA
CCCAATGGGGGAAAGCTCACACCGTTTCTCGGATGCGAGTTTCTTTGACA
TCTTGAACAGTATCAGCCCCATGCGTGATACCGAGACCCCCCCCACTCGA
CGCTGATCACGGCTACCGCTTCCTCACCTCCGGAACGAATCCTGCTCTCA
AACGTCCGCCCAGGGATCGTCCGCGCCAGTTCCGTCCCCGTCCCCGTCCC
CCCCCTCCTCCCCATCCTCCTCACTGGGTGCGCTCGAGCCTTCCCGCGCC
ATAGCGCTGCACCTGAAGGAAGCCAGGCCTGTGCGTAAGGTCGAGCCGAG
AGAGAGGATATTTTCGCAGAGCTCTCAGACTTCGGTCTTCTGGAGAGTGA
GTGAGAAACCATACCGGAGAGCAGGTGACAGAGTTACAGCAGTGGGGGGG
GCTGTTTAGGATCGGTCGGGTCGTGCCGGTGCCCGGTAGTGCTGGTTATT
CGCTGGCACAGACTGAATCACCACGAAATTATGCTCTTTCAAAAATGCAG
GTGTCCAGTTTATAGTGCCGTCAATTCTCTGGGCACGTGTCGGCAGAAAA
CAAGCCCCCCCGTTTAGTTGGTTGTAGAATAGGCAGACAGTGGAAGGCGT
TTGGAGGAGGCAGGTGTGTCGGATGCCCGACTCGAGATGAGGGTGGCAGA
GTGGATATCGACGGGAACGACCTGCCTGCTCCTGCGACGCGTGAAAGGAA
GGTACCTCCTTACTATACGTCGCCCACGGAGAGTTTGGCAGTTGCATGAG
ACCCTGCCACCCTGGCATCGAGCAGGGCGTAAAGACACGCCCGCTGGTGG
GAAAGGCAAGAGGGGGAAGACAAACAAATCCCTAACCGCTACCGGGGGCA
GGGACGAAGGTGCCGCCGCACACGTGGTTCGAGGGAGGGGTCGTGTTTCT
CGAAAAAGAAGTGCGATTTCGGCTCGCAGGGGATGGGATATACTTTCGTG
TGGGTTTCTGCAAACGGATGAGCCAGCTTGCTCGCGCTTCGTGAGAGGCA
AGAGAATAGCAACAGGGTTTCCTTGCTCCCATCCTGCCTCGTGCGCCATG
CAATGCCTGCTGCCAATGGATCCATTTGTTTCACATCCTCCTTCTGTGCC
ACTCCTTTCCGCCTGCTCCCAATAATCTACCCTCTACCCTCGCCTTCTCC
GTCACGGGCCGATCAATCCACACCTAACCAGAGCCCAGTATCACGCAGAC
AACGCACGGGGGAGTATCGCCACGGGATTGATTCCCCACCGGTGGGCTGT
TACGCCAGCGACGGGATGATCACGCGCGCGCAGCAGCAGCAGCAGCAGCC
GCGGCGCGGCGGTGGGGATGGCCTGCAGGTGGTGGGCTACGACGGCTACC
GCAACAGGTGGGTGCCGCTGAGTCGAAGGGGCCTCGAGCAGCTAGCTCTA
GAACAGGCTGCCCGCGGTCTTTGTGGTGGTGGTGGTGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1618:8552..11492+

>mRNA_E-fasciculatus_F_contig1618.4212.1 ID=mRNA_E-fasciculatus_F_contig1618.4212.1|Name=mRNA_E-fasciculatus_F_contig1618.4212.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2868bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1618:8552..11492+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCATCAACAAAGGGGCCGCAGCGAAAGTCCCCCCCGCGCCGATCGCC
GAGGCTCGCCGTGCTCGACCAACACCCACTAGCGGTACCACCAACAGCAG
CAGCATCACCCACAGCGGCGAGCTCGAACAAGAGGAGCATAGAAGAAGTC
CGTGGCAGTGGTAGCAGTGGTGGCGGTGATGGTGGCAACCGCAGTGGGGA
CCCGGCCGCTATACCCGAAGCCAAGGCCTACTCGGTGACAAGGTCAGGGA
AGAGAAGCAGGCAACAAGACATCGGCAACAACGGCAGCGTCGGCCGACAG
GTTGCTGCAGCAGCAACAGCGGCAGGAGCCAAATCTTCGGCGACACGGCT
CGGCAAGAGGAACAGCCATGGGCCCGGCGAAGAGAACAACAGCAACAGCG
GTCAACCTCAGGTTACCGATGTAGCGGCAACGGCAGTAGGGTTCAATACC
GCAACAGCAGGATTCAAAAAAACATCGGCGGCAACAAGTTCAAGCCTCGA
CGACGAGTGCGACAAAGACAGCAGCGGGCAACCTGTCTTCGAAGCAGCGG
GACCAGTGGTCAAAGCCCCGGTGGCAAGAAACCCGAGCGTGAAAATCAGC
CCAGACGTAGACGAGGAGAGCAACACCGGCAGCTGCTGCGAAGAGGTTCT
TCCATCGGGAGGAGCTAATGCCTCGGTGGCAGCAAGCGGCGGCGAGCCAC
AGGTTGCTGTAGCAGCACCAGCTGCAGCCAGCGCCTCGGCTACGACCTCC
GGTGAGAGGAACATAAGTCCGGGGATCGACACGGGCAACGAGGACGTCGG
CCAAGAACAGGTTGTTGCAGCAGCACCAGCAGTGTTAGCCCCGAAGACAA
GCTCCGGCGTGAGAAGCAGCAGCCAAGACTGCCGCGAGAAGGACAGCGAT
GGCGAAGAGGTCCTTGAAGCAGCAGAAGCCGAGGTCATGCCGACAAGCTC
GCGCAAGAGCAGCATCCCCGATGCCACAAAAAGGGCAAGCAACAGCAGTA
CTATCACGACCGACACCTCCACCATCAGCCCTCATATGGCGATCCTCCGG
CAGGTGCAAGCGGACCTATGCGAGGCTGTGTACAGGTGTGAAGAGCTGCT
GGGCAACATGGAGGAAGACCTGTTGAGGCGGCAGCCCAACGCCATGAGCG
TACCCAGCGTTGCCCAGATGGCATCAACAAAGGGGCCGCAGCGAAAGTCC
CCCCCGCGCCGATCGCCGAGGCTCGCCGTGCTCGACCAACACCCACTAGC
GGTACCACCAACAGCAGCAGCATCACCCACAGCGGCGAGCTCGAACAAGA
GGAGCATAGAAGAAGTCCGTGGCAGTGGTAGCAGTGGTGGCGGTGATGGT
GGCAACCGCAGTGGGGACCCGGCCGCTATACCCGAAGCCAAGGCCTACTC
GGTGACAAGGTCAGGGAAGAGAAGCAGGCAACAAGACATCGGCAACAACG
GCAGCGTCGGCCGACAGGTTGCTGCAGCAGCAACAGCGGCAGGAGCCAAA
TCTTCGGCGACACGGCTCGGCAAGAGGAACAGCCATGGGCCCGGCGAAGA
GAACAACAGCAACAGCGGTCAACCTCAGGTTACCGATGTAGCGGCAACGG
CAGTAGGGTTCAATACCGCAACAGCAGGATTCAAAAAAACATCGGCGGCA
ACAAGTTCAAGCCTCGACGACGAGTGCGACAAAGACAGCAGCGGGCAACC
TGTCTTCGAAGCAGCGGGACCAGTGGTCAAAGCCCCGGTGGCAAGAAACC
CGAGCGTGAAAATCAGCCCAGACGTAGACGAGGAGAGCAACACCGGCAGC
TGCTGCGAAGAGGTTCTTCCATCGGGAGGAGCTAATGCCTCGGTGGCAGC
AAGCGGCGGCGAGCCACAGGTTGCTGTAGCAGCACCAGCTGCAGCCAGCG
CCTCGGCTACGACCTCCGGTGAGAGGAACATAAGTCCGGGGATCGACACG
GGCAACGAGGACGTCGGCCAAGAACAGGTTGTTGCAGCAGCACCAGCAGT
GTTAGCCCCGAAGACAAGCTCCGGCGTGAGAAGCAGCAGCCAAGACTGCC
GCGAGAAGGACAGCGATGGCGAAGAGGTCCTTGAAGCAGCAGAAGCCGAG
GTCATGCCGACAAGCTCGCGCAAGAGCAGCATCCCCGATGCCACAAAAAG
GGCAAGCAACAGCAGTACTATCACGACCGACACCTCCACCATCAGCCCTC
ATATGGCGATCCTCCGGCAGGTGCAAGCGGACCTATGCGAGGCTGTGTAC
AGGTGTGAAGAGCTGCTGGGCAACATGGAGGAAGACCTGTTGAGGCGGCA
GCCCAACGCCATGAGCGTACCCAGCGTTGCCCAGGGATCGTCCGCGCCAG
TTCCGTCCCCGTCCCCGTCCCCCCCCTCCTCCCCATCCTCCTCACTGGGT
GCGCTCGAGCCTTCCCGCGCCATAGCGCTGCACCTGAAGGAAGCCAGGCC
TGTGCGTAAGGTCGAGCCGAGAGAGAGGATATTTTCGCAGAGCTCTCAGA
CTTCGGTCTTCTGGAGAGGATCGTCCGCGCCAGTTCCGTCCCCGTCCCCG
TCCCCCCCCTCCTCCCCATCCTCCTCACTGGGTGCGCTCGAGCCTTCCCG
CGCCATAGCGCTGCACCTGAAGGAAGCCAGGCCTGTGCGTAAGGTCGAGC
CGAGAGAGAGGATATTTTCGCAGAGCTCTCAGACTTCGGTCTTCTGGAGA
GTGGGTGCCGCTGAGTCGAAGGGGCCTCGAGCAGCTAGCTCTAGAACAGG
CTGCCCGCGGTCTTTGTGGTGGTGGTGGTGGTGAGTGGGTGCCGCTGAGT
CGAAGGGGCCTCGAGCAGCTAGCTCTAGAACAGGCTGCCCGCGGTCTTTG
TGGTGGTGGTGGTGGTGA
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