mRNA_E-fasciculatus_F_contig1618.4211.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Match: D8LJP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP2_ECTSI) HSP 1 Score: 412 bits (1060), Expect = 8.310e-138 Identity = 215/231 (93.07%), Postives = 216/231 (93.51%), Query Frame = 1
Query: 523 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGGGTPGAGVGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAVFF 1215
GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHN+RLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEG G ERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAVFF
Sbjct: 8 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNKRLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGXXXXXXXXXXXXXXG-ERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAVFF 237
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Match: A0A835YVB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVB1_9STRA) HSP 1 Score: 306 bits (783), Expect = 2.090e-96 Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 1
Query: 517 VGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRL--GLGHNERLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGGGTPGAGVGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAVFF 1215
+GGGVLAGGLHA+SGPDHLAALLPRIMG+ W +MRIGA WGLGHGFSAT+IGLAAFF KDR+ G G R ++ +G++TE LVGVSLI IGL+GLKESLLD P + +A ++ + G +P K GGG+RAIF NG+LHGFSWDGAPSLAPALA ++W VLWFLLAYC GTM AMSA TT+IGEGSVRVG+AL+QPDIP++LSVVSS +AI IGAVWL KA FF
Sbjct: 1 MGGGVLAGGLHAISGPDHLAALLPRIMGKAWPVAMRIGAVWGLGHGFSATLIGLAAFFLKDRIQAGGGGGGRWISKLGTYTEVLVGVSLITIGLIGLKESLLDK---PHEDDAAAAASEISGEKSP------AKRGGGQRAIFLNGLLHGFSWDGAPSLAPALACTTWHGVLWFLLAYCGGTMAAMSAATTIIGEGSVRVGQALEQPDIPKRLSVVSSGIAIAIGAVWLVKAAFF 226
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Match: A0A4D9DEM4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEM4_9STRA) HSP 1 Score: 239 bits (609), Expect = 1.350e-70 Identity = 127/238 (53.36%), Postives = 165/238 (69.33%), Query Frame = 1
Query: 505 AFAAVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGSWTEGLVGVSLIAIGLLGLKESL-LDYEETPAFEAKS--AGSAVVEGGGTPGAGVGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAV 1209
AF+ + GG+LAG LHAV+GPDHLAALLPR +G++W+++MRIGA WGLGHG SA ++G+ AFF K RL + L+ + +TE L+GVSLI IGLLGLKE+ D EA+ AGSA G K +A+F NG+LHGFSWDG P+LAPALA SW V+ FL +Y GTM++MS T+LIGEG+V+VG+ALD+P+IP+KL+ SS VAI +G VW KA+
Sbjct: 9 AFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHNTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSIAGSAAS----------GAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 236
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Match: W7TPT7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPT7_9STRA) HSP 1 Score: 239 bits (609), Expect = 6.280e-69 Identity = 125/235 (53.19%), Postives = 168/235 (71.49%), Query Frame = 1
Query: 505 AFAAVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGGGTPGAGVGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAV 1209
AF+ + GG+LAG LHAV+GPDHLAALLPR +G++W+++MRIGA WGLGHG SA ++G+ AFF K RL + L+ + +TE L+GVSLI IGLLGLKE+ ++ + ++ GS + G G GA K +A+F NG+LHGFSWDG P+LAPALA SW V+ FL +Y GTM++MS T+LIGEG+V+VG+ALD+P+IP+KL+ SS VAI +G VW KA+
Sbjct: 133 AFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAA-HFDVSAVMPLEAEGS--ITGSGASGA----AKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKAL 360
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Match: A0A7S2Y0T2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0T2_9STRA) HSP 1 Score: 230 bits (587), Expect = 2.050e-66 Identity = 128/248 (51.61%), Postives = 169/248 (68.15%), Query Frame = 1
Query: 469 RRLAFAAMANAAAFAAVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGSWTEGLVGVSLIAIGLLGLKESL-LDYEETPAFEAKSAGSAVVEGGGTPGAGVGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAV 1209
R LA AMA+AA+ A+VGGGVL+G LHA+SGPDHLAA++PR +G++W SM++GA WGLGHG S ++GL AF KD+L L + +++ + +WTE LVG+SLI IG LG+KES D ++ A E S K G ++IFFNG+LHG SWDG PSLAPALA ++W V+ FL AYC G +V+MS T+LIGEGSVRVG+ D P IP++LS+ SS +AI IG +W K +
Sbjct: 77 RPLATVAMASAASLASVGGGVLSGSLHAISGPDHLAAVVPRCIGKRWWISMQVGALWGLGHGVSGLMMGLFAFLVKDKLNL-NKSPMISNLSTWTEILVGLSLILIGFLGVKESRSFDSDKAAAKEKLEQESG---------------KKTGSFKSIFFNGLLHGLSWDGTPSLAPALAFTTWRPVVGFLSAYCWGVVVSMSMCTSLIGEGSVRVGR--DNPKIPQQLSMFSSGLAIVIGLLWTGKGI 306
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Match: A0A7S4J5D2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5D2_9STRA) HSP 1 Score: 223 bits (567), Expect = 1.590e-63 Identity = 119/233 (51.07%), Postives = 160/233 (68.67%), Query Frame = 1
Query: 514 AVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLG-LGHNERLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGGGTPGAGVGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAV 1209
A+ GGV AGGLHA++GPDHLAALLPR GQ+W+++ RIGA WG+GHG SAT++G+ AF K+R+ +G +V ++ E VG SL+ IGLLG+KE+ E +S +A E G V + + +RA+ FNGVLHGFSWDGAPSLAPA+A+++W + FLLAY GTM AM+ TTTLIGEG+ + G+ L +PDIP+KLS VSS +AI +G W + A+
Sbjct: 84 AISGGVFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRIGALWGMGHGVSATILGVCAFALKNRMSKMGAFSNIVHGASAFMEVAVGASLVFIGLLGIKEAREWEAEIEGGSPQSLSAAAGEDG------VKVAQ----KRAVVFNGVLHGFSWDGAPSLAPAVAVATWRGNITFLLAYALGTMAAMTITTTLIGEGTRKAGEVLHRPDIPQKLSFVSSIIAIGVGLFWCSLAL 306
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Match: A0A1Z5K7J2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7J2_FISSO) HSP 1 Score: 222 bits (566), Expect = 1.590e-63 Identity = 119/236 (50.42%), Postives = 166/236 (70.34%), Query Frame = 1
Query: 514 AVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRL-GLGHNERLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEE---TPAFEAKSAGSAVVEGGGTPGAGVGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAV 1209
A+ GG+ AGGLHA++GPDHLAALLPR GQ+W++++R+GA WG+GHG SATV+GL AF K + + ++++A TE VG+SLI IG++G++E+ ++E+ T ++S +AVV+ +K +RA+ FNG+LHGFSWDGAPSLAPA+A+++WG L FL AY GTM M+ TTLIGEG+ + G+ LD+PDIP+KLS VSS +A+ IGAVW AV
Sbjct: 69 AITGGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAVRVGALWGMGHGLSATVLGLTAFGLKSTVQNMKGMQKVLAGASHVTEIAVGLSLIVIGVMGIREAR-EWEQDLTTTMGASQSLSAAVVD--------EVASKHSTQKRAVLFNGILHGFSWDGAPSLAPAVAVATWGGSLAFLSAYAIGTMTTMALATTLIGEGTRKAGQVLDRPDIPQKLSFVSSILAMVIGAVWCYLAV 295
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Match: B7G7I3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7I3_PHATC) HSP 1 Score: 221 bits (562), Expect = 8.920e-63 Identity = 127/263 (48.29%), Postives = 170/263 (64.64%), Query Frame = 1
Query: 430 TTMGLRVLAPGGGRRLAFAAMANAAAFAAVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAF----FFKDRLGLGHNERLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGGGTPGAGVGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKA 1206
TT L ++AP G +A AA A+ GG+ AGGLHA++GPDHLAALLPR GQ+W+++ R+GA WG+GHG SAT+IG+AAF FK+ +G + LVA TE VG+SLI IG++G++E+ +E + +S SA + AG+ + +RA+ FNG+LHGFSWDGAPSLAPALA+++W L FL +Y GTM M+ TTLIGEG+ + G D+PDIP+KLS SS +AI IG VW A
Sbjct: 64 TTTSLAMVAPAG--------VAVAAITGAMTGGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRVGALWGMGHGVSATIIGVAAFGLKNTFKNSMG-SRLQTLVAGATHVTEIAVGLSLILIGMMGIREAREWEDELDGVQPQSLSSAAAD------AGIKTAQ----KRAVVFNGLLHGFSWDGAPSLAPALAVATWSGNLAFLFSYAVGTMTTMAIATTLIGEGTRKAGDFFDRPDIPQKLSFASSILAIAIGIVWCGLA 307
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Match: A0A7R9ZBQ6_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBQ6_9STRA) HSP 1 Score: 221 bits (562), Expect = 9.190e-63 Identity = 121/233 (51.93%), Postives = 158/233 (67.81%), Query Frame = 1
Query: 514 AVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLG-LGHNERLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGGGTPGAGVGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAV 1209
AV GGV AGGLHA++GPDHLAALLPR GQ+W+++ RIGA WG+GHG SAT++G+ AF K R+ +G R+V S+ E VG SL+ IGLLG+KE+ E +S +A E G M + +RA+ FNGVLHGFSWDGAPSLAPA+A+++W + FLLAY GTM AM+ TTLIGEG+ + G+ L +PDIP+KLS VSS +AI +G W + A+
Sbjct: 87 AVSGGVFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRIGALWGMGHGVSATILGVCAFALKSRMSKMGAFSRVVRGASSFMEIAVGASLVFIGLLGIKEAREWEAEIEGGVPQSLSAAAGEDG--------MKVAQ--KRAVVFNGVLHGFSWDGAPSLAPAIAVATWRGNITFLLAYALGTMGAMTIATTLIGEGTRKAGEVLHRPDIPQKLSYVSSIIAIGVGLFWCSLAL 309
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Match: A0A1E7FPG4_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPG4_9STRA) HSP 1 Score: 215 bits (547), Expect = 1.390e-60 Identity = 123/266 (46.24%), Postives = 163/266 (61.28%), Query Frame = 1
Query: 415 VSTTPTTMGLRVLAPGGGRRLAFAAMANAAAFAAVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGS-WTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGGGTPGAGVGMTKSGGGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAV 1209
+ T TT L V P A AA + GG+L G LHA++GPDHLAALLPR GQ+W+ + RIG WGLGHG S T++G+ + K +L +++ + + E VG+SLI IG++GLKE+ EE S SAV TP G K+ G RA+ FNG+LHGFSWDGAPSLAPALA++SWG L FL AY +GT+ M+ T+LIGEG+ R G+ ++PD+P+KLS +S +AITIG VW A+
Sbjct: 64 IRPTSTTTSLSVATP-----------AVAAVTGVITGGILGGALHAIAGPDHLAALLPRCCGQRWYNAGRIGILWGLGHGTSVTILGILGYALKSQLTKASGAKVILTGAAHFMEVAVGLSLIIIGIMGLKEAREWGEEMEELPTYSLSSAV-----TPSEG----KANNGNRAVIFNGLLHGFSWDGAPSLAPALAVASWGGNLAFLSAYAAGTIGVMAIATSLIGEGTRRAGEVFNRPDLPQKLSFFTSLLAITIGVVWCGLAL 309 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1618.4211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1618.4211.1 >prot_E-fasciculatus_F_contig1618.4211.1 ID=prot_E-fasciculatus_F_contig1618.4211.1|Name=mRNA_E-fasciculatus_F_contig1618.4211.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=369bp MVVAVARTLAAGVALALATRARGFVAPAAVTTMSGARPCSSRWPCSRTQSback to top mRNA from alignment at E-fasciculatus_F_contig1618:2220..8184- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1618.4211.1 ID=mRNA_E-fasciculatus_F_contig1618.4211.1|Name=mRNA_E-fasciculatus_F_contig1618.4211.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5965bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1618:2220..8184- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1618:2220..8184- >mRNA_E-fasciculatus_F_contig1618.4211.1 ID=mRNA_E-fasciculatus_F_contig1618.4211.1|Name=mRNA_E-fasciculatus_F_contig1618.4211.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2214bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1618:2220..8184- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |