mRNA_E-fasciculatus_F_contig16178.4210.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16178.4210.1
Unique NamemRNA_E-fasciculatus_F_contig16178.4210.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16178.4210.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 1.430e-72
Identity = 152/188 (80.85%), Postives = 154/188 (81.91%), Query Frame = 1 
Query:  130 WVYVWKGAQSNAQMLELAKEGARWLRDYEGWGVGSSALVVEEGQEPFEVLRHLDHTGGDAREPPVYGDLTSPSPPPTAARTGHSSFMPCPTPSHGXXXXXXXXXXMMMGRSAPMLSPAETPTLSPAGPSPSPGGFSFSPSPYGSTGVSPAGASRFGSAYGGGGGPTIXXXXXXXXXXXTGHHRLSAGG 693
            +VYVWKGA+SNAQMLELAKEGARWLRDYEGWGVGSSA VVEEGQEP EVLRHLD TGG AREPPVYGDLTSPSP                     XXXXXXXXXXMMMGRSAPMLSPAETPTLSP GPSPSPGG S SPSPYGSTGVSPAGASRFG AYGGGGGPTI  XXXXXXXX T HHRLS GG
Sbjct:  599 YVYVWKGARSNAQMLELAKEGARWLRDYEGWGVGSSAPVVEEGQEPPEVLRHLDQTGGQAREPPVYGDLTSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMMGRSAPMLSPAETPTLSPVGPSPSPGGVSLSPSPYGSTGVSPAGASRFGLAYGGGGGPTISPXXXXXXXXATRHHRLSGGG 786
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16178.4210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2L8_9PHAE1.430e-7280.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16178contigE-fasciculatus_F_contig16178:185..1767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size700
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16178.4210.1prot_E-fasciculatus_F_contig16178.4210.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16178 660..1767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.5350177-UTR-E-fasciculatus_F_contig16178:184..3471622928081.5350177-UTR-E-fasciculatus_F_contig16178:184..347Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16178 185..347 +
1695995816.0629666-UTR-E-fasciculatus_F_contig16178:184..3471695995816.0629666-UTR-E-fasciculatus_F_contig16178:184..347Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16178 185..347 +
1622928081.5543592-UTR-E-fasciculatus_F_contig16178:654..6591622928081.5543592-UTR-E-fasciculatus_F_contig16178:654..659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16178 655..659 +
1695995816.071071-UTR-E-fasciculatus_F_contig16178:654..6591695995816.071071-UTR-E-fasciculatus_F_contig16178:654..659Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16178 655..659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.569742-CDS-E-fasciculatus_F_contig16178:659..8061622928081.569742-CDS-E-fasciculatus_F_contig16178:659..806Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16178 660..806 +
1695995816.0801177-CDS-E-fasciculatus_F_contig16178:659..8061695995816.0801177-CDS-E-fasciculatus_F_contig16178:659..806Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16178 660..806 +
1622928081.5903983-CDS-E-fasciculatus_F_contig16178:1383..17671622928081.5903983-CDS-E-fasciculatus_F_contig16178:1383..1767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16178 1384..1767 +
1695995816.0919113-CDS-E-fasciculatus_F_contig16178:1383..17671695995816.0919113-CDS-E-fasciculatus_F_contig16178:1383..1767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16178 1384..1767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16178.4210.1

>prot_E-fasciculatus_F_contig16178.4210.1 ID=prot_E-fasciculatus_F_contig16178.4210.1|Name=mRNA_E-fasciculatus_F_contig16178.4210.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=177bp
MLELAKEGARWLRDYEGWGVGSSALVVEEGQEPFEVLRHLDHTGGDAREP
PVYGDLTSPSPPPTAARTGHSSFMPCPTPSHGGGGGGGGGGGMMMGRSAP
MLSPAETPTLSPAGPSPSPGGFSFSPSPYGSTGVSPAGASRFGSAYGGGG
GPTISPSGSTTVSPATGHHRLSAGGGA
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mRNA from alignment at E-fasciculatus_F_contig16178:185..1767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16178.4210.1 ID=mRNA_E-fasciculatus_F_contig16178.4210.1|Name=mRNA_E-fasciculatus_F_contig16178.4210.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1583bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16178:185..1767+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTCGACTCCGTCCCCGGCGGCCGCGAGGGCGAGGGCGGCGGCGGCGGCC
GCGGTGATCGCGAACGCTAAGGCGGAGGCGGCCGCGATTAGGCCTTTTTC
TGCGCCCGAGGTGTCGCTTCGACCAGCGTTGGGTGTACGTGTGGAAGGGG
GCGCAGAGCAATGGTGAGTGTGGAATTCGGGCCAGGGGCGGGGAGTTTCT
GTTGTGATTTGTTTTGTTAAGTGTATTCGTACATATGTATCGATGAACGA
TTACTTGCTTTTTCGGTTCGGACTAATCAATTTTCTCGTTTTTTGGCATA
TTTGTTGTCCGTAGGACAATGATGCCCTCGTGACCAGCGCAATGAGCTTC
TTTACGACACCTTTGTCAGAGAACCTTGCCAATGCTTGACGCACGCCCTC
GCCCATGCGTTGTCGACCTCATGGCGATGACCCGCTTGGCCTTCTCTGGT
CGCTTTTTCTGGCGTGGCAGCACAAATGCTCGAGCTGGCGAAAGAAGGTG
CGCGGTGGCTGCGCGACTACGAAGGCTGGGGGGTGGGGTCGAGCGCGCTG
GTGGTGGAGGAGGGGCAGGAACCTTTCGAAGTGCTGCGACATCTGGACCA
CACGGGGGGCGATGCAAGAGAGGTGAGTTACCAGAGTTTGAACCAACTAT
CAAAAATGCTTTGAAGTGTTTGATTGTGTAGGGCGTTTTGGTGATTGCCT
ATCGTCGGCGTTTACTGTAGAGCAATACGCGGGGGGCTGCGATGTGCGGC
GTTCCCATCCTTGTGAAAAGAAGAAGAGTGCTCACGGCGGTGTGGCTGGC
GGCTCCGCTAGTGGAGAAGAGGTGGAAGGCACTGCTGATGTGTGGTCTAT
TTCCCGTTACGAATACTGCGGGTCTGCTGCTATGTCAATGGCCCCACGAG
ATTTTGTTCTGGGAGATTTTGTGTAATCTAATTGTTCGCATCCGAAGCCG
CGGGTGAGACCCTTCTGTAGAGCACATCACATCTCGCAGATTCGAGATGA
CACGGGAGATCAGTCTCGCGTACTAGGCTCTCAGTTAGTGGTACTTCTCA
ATGGGCAGTGTGTGAGTGCAGTGTATGCGGTACGTCTTAAGGTGATCGTG
CTCCCGTTTTAACCATCCCATCCTCATCTGTGATAACGCTTCCTTTTTGA
TCACTCCATCCTCATCTGCGTTGCCCCGCCCCTTGCTGCCATAAAGCAGC
CGCCGGTCTACGGAGATCTCACTTCGCCGTCGCCGCCACCAACAGCCGCA
AGAACCGGCCACTCCTCCTTCATGCCGTGTCCGACGCCTTCGCACGGGGG
TGGCGGTGGCGGGGGTGGGGGCGGCGGGATGATGATGGGAAGGAGCGCGC
CGATGCTGTCGCCGGCAGAGACCCCGACTCTTTCGCCCGCAGGACCGAGC
CCTTCCCCCGGAGGGTTTAGCTTCTCGCCGTCTCCGTACGGCAGCACCGG
GGTCTCCCCCGCGGGGGCTTCGCGGTTCGGTTCGGCCTACGGGGGGGGAG
GGGGTCCGACGATCTCGCCGTCCGGGTCGACCACGGTTTCTCCGGCAACC
GGGCATCACAGGCTCAGCGCCGGCGGCGGCGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16178:185..1767+

>mRNA_E-fasciculatus_F_contig16178.4210.1 ID=mRNA_E-fasciculatus_F_contig16178.4210.1|Name=mRNA_E-fasciculatus_F_contig16178.4210.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1062bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16178:185..1767+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCGAGCTGGCGAAAGAAGGTGCGCGGTGGCTGCGCGACTACGAAGG
CTGGGGGGTGGGGTCGAGCGCGCTGGTGGTGGAGGAGGGGCAGGAACCTT
TCGAAGTGCTGCGACATCTGGACCACACGGGGGGCGATGCAAGAGAGATG
CTCGAGCTGGCGAAAGAAGGTGCGCGGTGGCTGCGCGACTACGAAGGCTG
GGGGGTGGGGTCGAGCGCGCTGGTGGTGGAGGAGGGGCAGGAACCTTTCG
AAGTGCTGCGACATCTGGACCACACGGGGGGCGATGCAAGAGAGCCGCCG
GTCTACGGAGATCTCACTTCGCCGTCGCCGCCACCAACAGCCGCAAGAAC
CGGCCACTCCTCCTTCATGCCGTGTCCGACGCCTTCGCACGGGGGTGGCG
GTGGCGGGGGTGGGGGCGGCGGGATGATGATGGGAAGGAGCGCGCCGATG
CTGTCGCCGGCAGAGACCCCGACTCTTTCGCCCGCAGGACCGAGCCCTTC
CCCCGGAGGGTTTAGCTTCTCGCCGTCTCCGTACGGCAGCACCGGGGTCT
CCCCCGCGGGGGCTTCGCGGTTCGGTTCGGCCTACGGGGGGGGAGGGGGT
CCGACGATCTCGCCGTCCGGGTCGACCACGGTTTCTCCGGCAACCGGGCA
TCACAGGCTCAGCGCCGGCGGCGGCGCGCCGCCGGTCTACGGAGATCTCA
CTTCGCCGTCGCCGCCACCAACAGCCGCAAGAACCGGCCACTCCTCCTTC
ATGCCGTGTCCGACGCCTTCGCACGGGGGTGGCGGTGGCGGGGGTGGGGG
CGGCGGGATGATGATGGGAAGGAGCGCGCCGATGCTGTCGCCGGCAGAGA
CCCCGACTCTTTCGCCCGCAGGACCGAGCCCTTCCCCCGGAGGGTTTAGC
TTCTCGCCGTCTCCGTACGGCAGCACCGGGGTCTCCCCCGCGGGGGCTTC
GCGGTTCGGTTCGGCCTACGGGGGGGGAGGGGGTCCGACGATCTCGCCGT
CCGGGTCGACCACGGTTTCTCCGGCAACCGGGCATCACAGGCTCAGCGCC
GGCGGCGGCGCG
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