mRNA_E-fasciculatus_F_contig16176.4209.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Match: D8LCQ8_ECTSI (Gamma carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCQ8_ECTSI) HSP 1 Score: 216 bits (549), Expect = 9.180e-68 Identity = 134/137 (97.81%), Postives = 137/137 (100.00%), Query Frame = 2
Query: 2 LASTRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGAVVRGDVNHVVIGSGSSVGDSAVVHVAGLAGNKPTIVGSNVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ 412
LASTRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYG+VVRGDVNHVVIG+GSSVGDSAVVHVAGLAGNKPTIVG+NVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ
Sbjct: 37 LASTRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGSVVRGDVNHVVIGAGSSVGDSAVVHVAGLAGNKPTIVGNNVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ 173
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Match: A0A2D4C5C0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5C0_PYTIN) HSP 1 Score: 136 bits (343), Expect = 2.720e-37 Identity = 84/135 (62.22%), Postives = 105/135 (77.78%), Query Frame = 2
Query: 8 STRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGAVVRGDVNHVVIGSGSSVGDSAVVHVAGLAGNKPTIVGSNVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ 412
STR V + G+ P+ A+ +FVAPNASVIGDVK+G+G+S+WYGA VRGDVN + IG +++ D AVVHVA + + PT +GSNV IGP A IHACT+ D C++G GA V+DXX XXXXXXXXXXXXXX VP+GQ
Sbjct: 40 STRCVANTGRAPTIAKGAFVAPNASVIGDVKIGKGSSVWYGATVRGDVNFITIGENTNIQDHAVVHVAKIHQDIPTKIGSNVTIGPSAIIHACTINDHCIIGTGAQVLDXXVVEXXXXXXXXXXXXXXKKVPSGQ 174
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Match: A0A8K1CL43_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL43_PYTOL) HSP 1 Score: 136 bits (342), Expect = 3.840e-37 Identity = 64/135 (47.41%), Postives = 90/135 (66.67%), Query Frame = 2
Query: 8 STRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGAVVRGDVNHVVIGSGSSVGDSAVVHVAGLAGNKPTIVGSNVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ 412
STR V + G+ P+ + +F+APNA+VIGDVK+G+G+S+WYGA VRGDVNH+ IG +++ D AVVHVA + + PT +GSNV +GP A IHACT++D C++G GA V+D +P+GQ
Sbjct: 40 STRLVANTGRAPAIEKGAFIAPNAAVIGDVKIGKGSSVWYGATVRGDVNHITIGENTNIQDHAVVHVAKIHQDLPTKIGSNVTVGPSAIIHACTIQDHCIIGTGAQVLDGAVVEAQSIVTAGSIVTYNKKIPSGQ 174
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Match: M4C3G6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3G6_HYAAE) HSP 1 Score: 134 bits (337), Expect = 2.000e-36 Identity = 74/135 (54.81%), Postives = 96/135 (71.11%), Query Frame = 2
Query: 8 STRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGAVVRGDVNHVVIGSGSSVGDSAVVHVAGLAGNKPTIVGSNVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ 412
STR+V + + P+ + FVAPNASVIGDVKVG+G+S+WY A VRGDVNH+ IG S++ D AVVHVA + + PT +G+NV +GP A +HACT++D C++G GA VMD XXXXXXXX VP+GQ
Sbjct: 37 STRAVKNLRRAPTFEEGVFVAPNASVIGDVKVGKGSSIWYNATVRGDVNHITIGENSNIQDQAVVHVAKIHRDSPTKIGNNVTVGPAAIVHACTIQDHCIIGTGAQVMDGSVIGAKXXXXXXXXVTQDKQVPSGQ 171
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Match: H3GWK8_PHYRM (Uncharacterized protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=H3GWK8_PHYRM) HSP 1 Score: 132 bits (333), Expect = 7.980e-36 Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 2
Query: 8 STRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGAVVRGDVNHVVIGSGSSVGDSAVVHVAGLAGNKPTIVGSNVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ 412
STR+V + G+ P + FVAPNASVIGDVKVG+G+S+WY A VRGDVNH+ IG +++ D AVVHVA + + PT +G+NV +GP A +HACT++D C++G GA V+D XXXXXXXXXXXXX VP+GQ
Sbjct: 37 STRAVKNLGRSPKFEEGVFVAPNASVIGDVKVGKGSSIWYNATVRGDVNHITIGENTNIQDQAVVHVAKIHKDIPTKIGNNVTVGPAAIVHACTIQDHCIIGTGAQVLDGAVVGAKXXXXXXXXXXXXXQVPSGQ 171
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Match: A0A3R7HC37_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HC37_9STRA) HSP 1 Score: 133 bits (334), Expect = 8.000e-36 Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = 2
Query: 8 STRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGAVVRGDVNHVVIGSGSSVGDSAVVHVAGLAGNKPTIVGSNVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ 412
STR+V + G+ P A+ +FVAPNASVIGDVKVG+G+S+WY A VRGDVN++ IG +++ D AVVHVA + + PT +G+NV +GP A +HACT++D C++G GA V+D VP+GQ
Sbjct: 51 STRAVKNLGRSPQFAERTFVAPNASVIGDVKVGKGSSIWYNATVRGDVNYITIGENTNIQDQAVVHVAKIHKDIPTKIGNNVTVGPAAIVHACTIQDHCIIGTGAQVLDGAEVGAKSIITAGSIVTQNKKVPSGQ 185
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Match: A0A484E3A7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3A7_BRELC) HSP 1 Score: 132 bits (331), Expect = 3.460e-35 Identity = 63/135 (46.67%), Postives = 87/135 (64.44%), Query Frame = 2
Query: 8 STRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGAVVRGDVNHVVIGSGSSVGDSAVVHVAGLAGNKPTIVGSNVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ 412
STR++ + G+ P FVAPNASVIGDVKVG G+S+WY A VRGDVN+++IG +++ D AVVHVA + + PTI+G+NV +GP A +HACT+ D C++G GA V+D +P+GQ
Sbjct: 69 STRAIKNLGRSPKFGDGVFVAPNASVIGDVKVGNGSSIWYNATVRGDVNYIIIGENTNIQDQAVVHVAKINKDIPTIIGNNVTVGPAAIVHACTIHDHCIIGTGAQVLDGAVIGAKSIVTAGSIVTYEKQIPSGQ 203
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Match: A0A0N7L486_PLAHL (Gamma carbonic dehydratase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L486_PLAHL) HSP 1 Score: 124 bits (311), Expect = 1.580e-32 Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 2
Query: 8 STRSVGHKGKVPSTAQASFVAPNASVIGDVKVGEGASLWYGAVVRGDVNHVVIGSGSSVGDSAVVHVAGLAGNKPTIVGSNVVIGPRATIHACTLKDDCMVGAGA 322
STR+V + G+ P FVAPNASVIGDVKVG+G+S+WY A VRGDVN++ IG +++ D AVVHVA + + PT +G+NV +GP A +HACT++D C++G GA
Sbjct: 37 STRAVKNLGRSPEFEDGVFVAPNASVIGDVKVGKGSSIWYNATVRGDVNYITIGENTNIQDQAVVHVAKIYKDIPTKIGNNVTVGPAAILHACTIQDHCIIGTGA 141
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Match: E1ZF76_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZF76_CHLVA) HSP 1 Score: 122 bits (307), Expect = 7.950e-32 Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 2
Query: 32 GKVPSTAQASFVAPNASVIGDVKVGEGASLWYGAVVRGDVNHVVIGSGSSVGDSAVVHVA--GLAGNK-PTIVGSNVVIGPRATIHACTLKDDCMVGAGATVMD 334
GK P A + FVAPNASV+GDVK+G GAS+WYGAVVRGDVN VVIG ++V D+ +VHVA +AG PT +GSNV IGP ATIHA T++D +VG GA +MD
Sbjct: 47 GKRPQLADSVFVAPNASVVGDVKIGSGASIWYGAVVRGDVNSVVIGDRTNVQDNVLVHVAKHNMAGKALPTQIGSNVTIGPGATIHAATIEDCVVVGMGAVIMD 150
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Match: C1MVP7_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MVP7_MICPC) HSP 1 Score: 119 bits (298), Expect = 1.530e-30 Identity = 86/129 (66.67%), Postives = 103/129 (79.84%), Query Frame = 2
Query: 35 KVPSTAQASFVAPNASVIGDVKVGEGASLWYGAVVRGDVNHVVIGSGSSVGDSAVVHVA--GLAG-NKPTIVGSNVVIGPRATIHACTLKDDCMVGAGATVMDXXXXXXXXXXXXXXXXXXXXXVPTGQ 412
KVP A FVAP+ASVIGDV +GE +S+WYGAV+RGDVN V IGS +++ D+AVVHVA + G + PT++G V +G A IHACT+KDD +G GATVMDXXXXXXXXXXXXXXXXXXXXXVP+GQ
Sbjct: 48 KVPKLPAAGFVAPSASVIGDVTIGENSSVWYGAVLRGDVNPVSIGSFTNIQDNAVVHVAKTNVGGVSLPTVIGDRVTVGHNAIIHACTIKDDAFIGMGATVMDXXXXXXXXXXXXXXXXXXXXXVPSGQ 176 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16176.4209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16176.4209.1 >prot_E-fasciculatus_F_contig16176.4209.1 ID=prot_E-fasciculatus_F_contig16176.4209.1|Name=mRNA_E-fasciculatus_F_contig16176.4209.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp VGVHQECRAQGQGAIDRTGFLRGPQRFRHRRRQGWRRSVPVVRRRRPRGRback to top mRNA from alignment at E-fasciculatus_F_contig16176:576..2414- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16176.4209.1 ID=mRNA_E-fasciculatus_F_contig16176.4209.1|Name=mRNA_E-fasciculatus_F_contig16176.4209.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1839bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16176:576..2414- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16176:576..2414- >mRNA_E-fasciculatus_F_contig16176.4209.1 ID=mRNA_E-fasciculatus_F_contig16176.4209.1|Name=mRNA_E-fasciculatus_F_contig16176.4209.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16176:576..2414- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |