mRNA_E-fasciculatus_F_contig16174.4208.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16174.4208.1
Unique NamemRNA_E-fasciculatus_F_contig16174.4208.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16174.4208.1 vs. uniprot
Match: D7FKK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK9_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 2.790e-79
Identity = 110/163 (67.48%), Postives = 131/163 (80.37%), Query Frame = 1 
Query:   19 MITGGHWKEYLTSEKGNAWFDPWNRVMQPKLDVLAAMVEDQDQQGTSSEKPFRVLMVGDSTMSHQYGAICAFMGEREGRRYNPEEAQHGSPGCCMDTLDE-------GGRGLCFEFDQFRFLDPKRAAKTSVDAYYFGSGLHLLHMYPHWPEMNPMEPLRVQS 486
            ++ G  WK YL+ E GNAWFD WN+ MQ KLD+LA++ E+++   T   +PFRVLM+GDSTMSHQ+GAIC FMGEREGRR++PE  Q  +PGCCMDTL +       GGRGLCF++D FRFLDPKR  +TSVDAYYFGSGLHLLHMYPHWPEM+PMEPLRVQS
Sbjct:   30 VVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTET---EPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVIQGRAPGCCMDTLPKEDGGEGGGGRGLCFQYDHFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQS 189
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BLAST of mRNA_E-fasciculatus_F_contig16174.4208.1 vs. uniprot
Match: D7FJN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 2.500e-78
Identity = 111/163 (68.10%), Postives = 132/163 (80.98%), Query Frame = 1 
Query:   19 MITGGHWKEYLTSEKGNAWFDPWNRVMQPKLDVLAAMVEDQDQQGTSSEKPFRVLMVGDSTMSHQYGAICAFMGEREGRRYNPEEAQHGSPGCCMDTLDE-------GGRGLCFEFDQFRFLDPKRAAKTSVDAYYFGSGLHLLHMYPHWPEMNPMEPLRVQS 486
            ++ G  WK YL+ E GNAWFD WN+ MQ KLD+LA++ E+++   T   +PFRVLM+GDSTMSHQ+GAIC FMGEREGRR++PE  Q  +PGCCMDTL +       GGRGLCF++DQFRFLDPKR  +TSVDAYYFGSGLHLLHMYPHWPEM+PMEPLRVQS
Sbjct:   30 VVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTET---EPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVIQRSAPGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQS 189
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BLAST of mRNA_E-fasciculatus_F_contig16174.4208.1 vs. uniprot
Match: D7FJP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP0_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.600e-62
Identity = 96/108 (88.89%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:  184 MVGDSTMSHQYGAICAFMGEREGRRYNPEEAQHGSPGCCMDTL---DEG----GRGLCFEFDQFRFLDPKRAAKTSVDAYYFGSGLHLLHMYPHWPEMNPMEPLRVQS 486
            MVGDSTMSHQYGAIC FMGEREGRRY+PE+AQHGSPGCCMDTL   DEG    GRGLCFEFDQFRFLDPKRAA+TSVDAYYFGSGLHLLHMYPHWPEM PMEPLRVQS
Sbjct:    1 MVGDSTMSHQYGAICGFMGEREGRRYDPEKAQHGSPGCCMDTLPKEDEGEGGGGRGLCFEFDQFRFLDPKRAARTSVDAYYFGSGLHLLHMYPHWPEMYPMEPLRVQS 108
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BLAST of mRNA_E-fasciculatus_F_contig16174.4208.1 vs. uniprot
Match: D7FJP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP2_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.410e-58
Identity = 94/127 (74.02%), Postives = 100/127 (78.74%), Query Frame = 1 
Query:  106 KLDVLAAMVEDQDQQGTSSEKPFRVLMVGDSTMSHQYGAICAFMGEREGRRYNPEEAQHGSPGCCMDTLDEGGRGLCFEFDQFRFLDPKRAAKTSVDAYYFGSGLHLLHMYPHWPEMNPMEPLRVQS 486
            KLDVLAA+VE+Q  QG   E+PFRVLMVGDSTM HQYGA+C FMGER GRRYNP E             + GGRGLCFE DQ RFLDPKRA +TSVDAYYFGSGLHLLHM PHWPEMNPMEPLRVQS
Sbjct:   64 KLDVLAALVENQ--QGGRREQPFRVLMVGDSTMRHQYGALCGFMGERGGRRYNPRE-------------EGGGRGLCFELDQLRFLDPKRAGETSVDAYYFGSGLHLLHMLPHWPEMNPMEPLRVQS 175
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BLAST of mRNA_E-fasciculatus_F_contig16174.4208.1 vs. uniprot
Match: A0A6H5JXH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH8_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.340e-28
Identity = 69/179 (38.55%), Postives = 95/179 (53.07%), Query Frame = 1 
Query:    4 SRDDAMITGGHWKEYLTSEKG-NAWFDPWNRVMQPKLDVLAAMVEDQDQQGTSS-------EKPFRVLMVGDSTMSHQYGAICAFMGEREGRRYNPEEAQHGSPGCCMDTLDE-------------------------GGRGLCFEFDQFRFLDPKR-AAKTSVDAYYFGSGLHLLHMY 438
            ++ D  ++G  WK +L S  G + WF  WN ++QP++D LAA+ E +   G +S       ++PFRV M+GDSTM  Q+G ICAF+ ER G  +  + A H    CC+DTL                           GGRG+CF     +FL+P    +  S DA YFGSGLHLLHM+
Sbjct:   90 AQSDKYMSGAQWKNFLESGVGGDTWFTRWNAMVQPRIDKLAALAETERNWGDASSSGGRGTQQPFRVAMIGDSTMMQQHGVICAFLAERAGSLF--DAAGHQDE-CCIDTLPREPAEEGEDANDHGTPALDLHNHTVNGGRGVCFRRSFQKFLEPPEWESLGSPDAVYFGSGLHLLHMH 265
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BLAST of mRNA_E-fasciculatus_F_contig16174.4208.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 5.350e-26
Identity = 71/196 (36.22%), Postives = 100/196 (51.02%), Query Frame = 1 
Query:    4 SRDDAMITGGHWKEYLTSE-KGNAWFDPWNRVMQPKLDVLAAMVEDQDQQGTSS-------EKPFRVLMVGDSTMSHQYGAICAFMGEREGRRYNPEEAQHGSPGCCMDTLDE--------------------------GGRGLCFEFDQFRFLDPKR-AAKTSVDAYYFGSGLHLLHMYPHWPEMNPMEPLRVQS 486
            ++ +  ++G  WK +L+S   G+ WF  WN + QP++D +AA+ E +   G +S       ++PFRV MVGDSTM  Q+G ICAF+ ER G  +  + A H    CC+DTL                            GGRG+CF     +FL+P + A+  S DA YFG GLHLL        M+ ME  R Q+
Sbjct:  168 AQPEKYMSGARWKNFLSSGVSGDTWFTRWNSMAQPRIDKVAALAEAERNGGDASXXXXXXTQQPFRVAMVGDSTMMQQHGVICAFLAERAGSLF--DAAGHQDE-CCIDTLPREPAEEGGDANDHGTPALDLGNHTANGGGRGVCFRHSFQKFLEPPQWASLGSPDAVYFGRGLHLL-------PMDNMEGERAQA 353
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16174.4208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FKK9_ECTSI2.790e-7967.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJN9_ECTSI2.500e-7868.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP0_ECTSI1.600e-6288.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP2_ECTSI1.410e-5874.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXH8_9PHAE1.340e-2838.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0U4_ECTSI5.350e-2636.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16174contigE-fasciculatus_F_contig16174:612..2640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000600.1
Exons3
Model size489
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16174.4208.1prot_E-fasciculatus_F_contig16174.4208.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16174 630..2640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.3818672-UTR-E-fasciculatus_F_contig16174:611..6291622928081.3818672-UTR-E-fasciculatus_F_contig16174:611..629Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16174 612..629 +
1695995815.995437-UTR-E-fasciculatus_F_contig16174:611..6291695995815.995437-UTR-E-fasciculatus_F_contig16174:611..629Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16174 612..629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.3937485-CDS-E-fasciculatus_F_contig16174:629..6971622928081.3937485-CDS-E-fasciculatus_F_contig16174:629..697Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16174 630..697 +
1695995816.0055885-CDS-E-fasciculatus_F_contig16174:629..6971695995816.0055885-CDS-E-fasciculatus_F_contig16174:629..697Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16174 630..697 +
1622928081.4050007-CDS-E-fasciculatus_F_contig16174:1504..16881622928081.4050007-CDS-E-fasciculatus_F_contig16174:1504..1688Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16174 1505..1688 +
1695995816.0171769-CDS-E-fasciculatus_F_contig16174:1504..16881695995816.0171769-CDS-E-fasciculatus_F_contig16174:1504..1688Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16174 1505..1688 +
1622928081.4209938-CDS-E-fasciculatus_F_contig16174:2421..26401622928081.4209938-CDS-E-fasciculatus_F_contig16174:2421..2640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16174 2422..2640 +
1695995816.0254827-CDS-E-fasciculatus_F_contig16174:2421..26401695995816.0254827-CDS-E-fasciculatus_F_contig16174:2421..2640Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16174 2422..2640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16174.4208.1

>prot_E-fasciculatus_F_contig16174.4208.1 ID=prot_E-fasciculatus_F_contig16174.4208.1|Name=mRNA_E-fasciculatus_F_contig16174.4208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=157bp
MITGGHWKEYLTSEKGNAWFDPWNRVMQPKLDVLAAMVEDQDQQGTSSEK
PFRVLMVGDSTMSHQYGAICAFMGEREGRRYNPEEAQHGSPGCCMDTLDE
GGRGLCFEFDQFRFLDPKRAAKTSVDAYYFGSGLHLLHMYPHWPEMNPME
PLRVQS*
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mRNA from alignment at E-fasciculatus_F_contig16174:612..2640+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16174.4208.1 ID=mRNA_E-fasciculatus_F_contig16174.4208.1|Name=mRNA_E-fasciculatus_F_contig16174.4208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2029bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16174:612..2640+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTCTCGAGATGACGCGATGATCACGGGAGGGCATTGGAAGGAGTACCT
CACGAGCGAGAAGGGAAACGCCTGGTTCGACCCTTGGTGGGAAAAAAAAA
AAATGCTCGCTAGCCGGGCCGTTATTGTTGTTGCTCTAGTTGTTGGTGTC
TTAGCCTTCAGAACTCATGCCTATGAAGATTATGTTGAGGGAGGCGATAA
CGGTGATAGTGACGAGGGCGGTGTTGGATGAGGTGAGTTTGATGGTGTTT
TTGTTGTTTTTGTCGTTGCTAATTTCCGCACCGATGATGTTGAAAGTGCC
ACTCCTCTCTTCCGGCTGTTGTTGGAGAAAGAGGCGATACCGGTGACCAT
GTTGTTGTGGTCGTTCGTGTTGTTTTGAAGCTCGTACCGGGTGTTTTGCT
ACTAACTCCGCTGTTGGGGGGGACATCGGTATCGATTTTTCTGTTGAGGT
AATAGTGCTGGCGATGCCGGTGGTGGTGTTGTTGGAGGTGATGGCGATTA
CGAAAAGGGGACTCGGAATCAATAGACCCCGTTTACAGTGCCGCGACTAA
CCGCAGGAGCTGTCCATGTAGCAACATATGTCTCTCTGGTGGAGGAGAGA
ATGCAATTCTCGCCACCGCCAATACTGTTTTTCGTTTTCCTCTGAAGGTC
GCAGTACATGTAGTCATTCACACATGTCAACTGTTTAGCGTGCACACAGA
CTCTGGTGTCCAGTTTTTATTTTTCATAGAAAGGTGTATGTACCCCCTTT
GGGGCAGTTGGCTTGTGACCACGGCAGACGTCCGTGTCAGTTGGACCAGT
ACCGACATTAGAAGGTACAGTACTGAGCGGAGACCGGAAGGGTTTTTAAC
GTGAAGACAATAACAACAACAACACACCGGGGTCCTTTTCCAGGAACCGC
GTGATGCAGCCCAAGCTCGACGTGCTCGCCGCCATGGTGGAGGACCAAGA
CCAACAGGGGACCAGCAGCGAGAAACCCTTCCGGGTTCTGATGGTCGGGG
ATAGCACGATGAGCCACCAATACGGGGCGATCTGCGCCTTCATGGGGGAG
AGAGAGGGGCGACGATATAACCCCGAGGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGATGTTTTTTTAGCGCCGACCGTGCTGTCCGGCTGAC
CAATGAAAACACGTCAGCGCCAGCAGCTGAAACCAAGGTCCCTGGAAGAG
GGGCACAATTCGAAACATGCGCATTGCGCTGGATACGAATGTCGAAATGA
ATATTCTCTCTGCAATTCCTTTCACAGACACACGTGTGTGTTGTGTGTGC
ACGTCATTTTTGCTAGCATCGACCGCTCTATCCGGCCGACTAATGAAGAT
ACGTCAGTCCCAGTGCGGCTGAAAGACAGTGATCGCTTCTAATTTCCATG
ATCTGGGACAGGCGTACAGTGGTCAAATTCTCCTCTCCCGAGATCGCCGC
CAGTCTAATGTAGTAGTGTCTCTCGTTCAGGCGTTTCGTGGCCATGCCGG
GGGCACACAGAACGCTCTTTCTCTCCCCGGGGAAGGAAGGCACCCTCACT
TCACGTCGGTGGTAGATGCCTTGGATATATTTTGTCAATTTCGATGTCGT
GCTGCCATGTTGTCCTATTGCAGACACAAGTCAGCTGGATTTGGCCTACG
TTAGTGGCTTGATGCTTTCTTTAGAACCCGGGCATCGCGTGTTGCATCTG
TTCACTTGGCCCTTGGAAACCGTTGTTGTTTTCTCCTTTTTCGCGTGTGT
TTACTGCACTCTCAAGAAAGCGCCGCTCCTCCTGCTCGTCACGTGTCCCC
CTTCACCCAGGAAGCGCAGCACGGGTCCCCTGGCTGCTGCATGGACACGT
TGGACGAGGGAGGGCGGGGGCTCTGCTTCGAGTTCGACCAGTTCCGCTTC
CTTGACCCCAAGCGAGCGGCCAAGACTTCGGTGGACGCCTACTACTTCGG
CAGCGGGCTTCACCTGCTGCACATGTACCCCCACTGGCCGGAGATGAACC
CGATGGAACCGCTACGAGTGCAATCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16174:612..2640+

>mRNA_E-fasciculatus_F_contig16174.4208.1 ID=mRNA_E-fasciculatus_F_contig16174.4208.1|Name=mRNA_E-fasciculatus_F_contig16174.4208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=942bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16174:612..2640+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCACGGGAGGGCATTGGAAGGAGTACCTCACGAGCGAGAAGGGAAA
CGCCTGGTTCGACCCTTGATGATCACGGGAGGGCATTGGAAGGAGTACCT
CACGAGCGAGAAGGGAAACGCCTGGTTCGACCCTTGGAACCGCGTGATGC
AGCCCAAGCTCGACGTGCTCGCCGCCATGGTGGAGGACCAAGACCAACAG
GGGACCAGCAGCGAGAAACCCTTCCGGGTTCTGATGGTCGGGGATAGCAC
GATGAGCCACCAATACGGGGCGATCTGCGCCTTCATGGGGGAGAGAGAGG
GGCGACGATATAACCCCGAGGAACCGCGTGATGCAGCCCAAGCTCGACGT
GCTCGCCGCCATGGTGGAGGACCAAGACCAACAGGGGACCAGCAGCGAGA
AACCCTTCCGGGTTCTGATGGTCGGGGATAGCACGATGAGCCACCAATAC
GGGGCGATCTGCGCCTTCATGGGGGAGAGAGAGGGGCGACGATATAACCC
CGAGGAAGCGCAGCACGGGTCCCCTGGCTGCTGCATGGACACGTTGGACG
AGGGAGGGCGGGGGCTCTGCTTCGAGTTCGACCAGTTCCGCTTCCTTGAC
CCCAAGCGAGCGGCCAAGACTTCGGTGGACGCCTACTACTTCGGCAGCGG
GCTTCACCTGCTGCACATGTACCCCCACTGGCCGGAGATGAACCCGATGG
AACCGCTACGAGTGCAATCGTGAGAAGCGCAGCACGGGTCCCCTGGCTGC
TGCATGGACACGTTGGACGAGGGAGGGCGGGGGCTCTGCTTCGAGTTCGA
CCAGTTCCGCTTCCTTGACCCCAAGCGAGCGGCCAAGACTTCGGTGGACG
CCTACTACTTCGGCAGCGGGCTTCACCTGCTGCACATGTACCCCCACTGG
CCGGAGATGAACCCGATGGAACCGCTACGAGTGCAATCGTGA
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