mRNA_E-fasciculatus_F_contig16158.4201.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16158.4201.1
Unique NamemRNA_E-fasciculatus_F_contig16158.4201.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16158.4201.1 vs. uniprot
Match: D7G555_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G555_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 3.210e-75
Identity = 129/133 (96.99%), Postives = 130/133 (97.74%), Query Frame = 1 
Query:   43 QTNHPLDPLVALAGNIQCLFQSVNDENLDVRRSAARVVGRASRQQSTMVMPFVRVALVQLGRHLDVSQDPLVKRERILILTDLLTSAGSLVRPYVSSIMPQLLLELVGSSGRLGGVGGSHRLSYLQHRPPGAG 441
            +TNHPLDPLVALAGNIQCLFQSVNDENLDVRRSAARVVGRASRQQSTMVMPFVRVALVQLGRHLDVSQDPLVKRERILILTDLLTSAGSLVRPYVSSIMPQLLLELVGSSG LGGVGGSHRLSYLQHRP G G
Sbjct:  675 ETNHPLDPLVALAGNIQCLFQSVNDENLDVRRSAARVVGRASRQQSTMVMPFVRVALVQLGRHLDVSQDPLVKRERILILTDLLTSAGSLVRPYVSSIMPQLLLELVGSSGCLGGVGGSHRLSYLQHRPSGTG 807
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BLAST of mRNA_E-fasciculatus_F_contig16158.4201.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 7.090e-74
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 1 
Query:   43 QTNHPLDPLVALAGNIQCLFQSVNDENLDVRRSAARVVGRASRQQSTMVMPFVRVALVQLGRHLDVSQDPLVKRERILILTDLLTSAGSLVRPYVSSIMPQLLLELVGSSGRLGGVGGSHRLSYLQHRPPGAG 441
            + NHPLDPLVALAGNIQCLFQSVNDENLDVRRSAARV+GRASRQQSTMVMPFVRVALVQLGRHLDVSQDPLVKRERILILTDLLTSAGSLVRPYVSSIMPQLLLELVGSSGRLGGVGGSHRLSYLQHRP G+G
Sbjct: 1326 EMNHPLDPLVALAGNIQCLFQSVNDENLDVRRSAARVIGRASRQQSTMVMPFVRVALVQLGRHLDVSQDPLVKRERILILTDLLTSAGSLVRPYVSSIMPQLLLELVGSSGRLGGVGGSHRLSYLQHRPRGSG 1458
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BLAST of mRNA_E-fasciculatus_F_contig16158.4201.1 vs. uniprot
Match: K2H3I1_ENTNP (Serine/threonine-protein kinase TOR (Fragment) n=1 Tax=Entamoeba nuttalli (strain P19) TaxID=1076696 RepID=K2H3I1_ENTNP)

HSP 1 Score: 65.1 bits (157), Expect = 1.920e-9
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:   61 DPLVALAGNIQCLFQSVNDENLDVRRSAARVVGRASRQQSTMVMPFVRVALVQLGRHLDVSQDPLVKRERILILTDLLTSAGSLVRPYVSSIMPQLLLEL 360
            D  +A + N+Q LF  +NDENL VR  A +++GR +      VMP  R  +++L   L    D     +  L++  L+ S+G L +PYV  ++  LL +L
Sbjct:  419 DSFLAQSRNVQTLFVVLNDENLQVREYAIKIIGRLTHYNPAFVMPLFRKTIIRLLTQLQFINDLKTDEQVTLLMGQLVKSSGKLTKPYVEPLLNSLLPKL 518
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BLAST of mRNA_E-fasciculatus_F_contig16158.4201.1 vs. uniprot
Match: UPI001DD7F303 (uncharacterized protein n=1 Tax=Ogataea philodendri TaxID=1378263 RepID=UPI001DD7F303)

HSP 1 Score: 60.1 bits (144), Expect = 1.120e-7
Identity = 32/98 (32.65%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:   61 DPLVALAGNIQCLFQSVNDENLDVRRSAARVVGRASRQQSTMVMPFVRVALVQLGRHLDVS-QDPLVKRERILILTDLLTSAGSLVRPYVSSIMPQLL 351
            DP ++ A N++ LF  +NDE+L++R++A ++VGR +      ++P +R  L+QL   L+    +   K +  L+L+  ++  G L +PY+  IM  LL
Sbjct:  625 DPQLSQAENVRLLFMVLNDESLEIRKAAIKLVGRLAEINPAYIVPSLRKLLIQLLTTLEYGGHNSRKKEDTALLLSVFISHTGDLTKPYLKPIMDVLL 722
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BLAST of mRNA_E-fasciculatus_F_contig16158.4201.1 vs. uniprot
Match: A0A0D2UH62_CAPO3 (DNA-directed RNA polymerase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UH62_CAPO3)

HSP 1 Score: 60.1 bits (144), Expect = 1.140e-7
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:   61 DPLVALAGNIQCLFQSVNDENLDVRRSAARVVGRASRQQSTMVMPFVRVALVQLGRHLDVSQDPLVKRERILILTDLLTSAGSLVRPYVSSIMPQLLLEL 360
            D  +A A N++ LF ++NDE   +R  A  ++GR +      VMP +R  L+QL   L+ S     K E   +L++L+++A  L++PYV  I+  LL +L
Sbjct: 1877 DNYLAQAENLRALFVALNDEVFAIRELAIGIIGRLTVLNPAYVMPSLRKTLIQLLTELEYSGVSRNKEESARLLSNLISNAPRLIKPYVEPILRTLLSKL 1976
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16158.4201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G555_ECTSI3.210e-7596.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7N2_9PHAE7.090e-7496.24LysM domain-containing protein (Fragment) n=1 Tax=... [more]
K2H3I1_ENTNP1.920e-934.00Serine/threonine-protein kinase TOR (Fragment) n=1... [more]
UPI001DD7F3031.120e-732.65uncharacterized protein n=1 Tax=Ogataea philodendr... [more]
A0A0D2UH62_CAPO31.140e-735.00DNA-directed RNA polymerase n=2 Tax=Capsaspora owc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16158contigE-fasciculatus_F_contig16158:349..789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue3.4e-63
Seed eggNOG ortholog2880.D7G555
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928080.2577736-CDS-E-fasciculatus_F_contig16158:348..7891622928080.2577736-CDS-E-fasciculatus_F_contig16158:348..789Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16158 349..789 +
1695995815.5446038-CDS-E-fasciculatus_F_contig16158:348..7891695995815.5446038-CDS-E-fasciculatus_F_contig16158:348..789Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16158 349..789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16158.4201.1prot_E-fasciculatus_F_contig16158.4201.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16158 349..789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16158.4201.1

>prot_E-fasciculatus_F_contig16158.4201.1 ID=prot_E-fasciculatus_F_contig16158.4201.1|Name=mRNA_E-fasciculatus_F_contig16158.4201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=147bp
LLTAPAAPPRPAPPQTNHPLDPLVALAGNIQCLFQSVNDENLDVRRSAAR
VVGRASRQQSTMVMPFVRVALVQLGRHLDVSQDPLVKRERILILTDLLTS
AGSLVRPYVSSIMPQLLLELVGSSGRLGGVGGSHRLSYLQHRPPGAG
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mRNA from alignment at E-fasciculatus_F_contig16158:349..789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16158.4201.1 ID=mRNA_E-fasciculatus_F_contig16158.4201.1|Name=mRNA_E-fasciculatus_F_contig16158.4201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=441bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16158:349..789+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCTCACCGCGCCCGCCGCCCCGCCCCGCCCCGCCCCGCCGCAGACGAA
CCACCCCCTGGATCCCCTCGTGGCGCTGGCGGGGAACATCCAGTGCCTCT
TCCAGTCGGTCAACGACGAGAACCTTGACGTGAGACGGAGCGCGGCGCGG
GTGGTCGGGAGGGCCTCGAGGCAGCAGTCCACCATGGTGATGCCCTTCGT
GAGGGTGGCGCTCGTGCAGCTCGGGAGGCACCTGGACGTGTCCCAGGACC
CGCTGGTGAAACGGGAGCGCATCCTTATCCTTACGGACCTGCTCACCTCG
GCCGGGTCTCTGGTCCGGCCGTACGTGTCGAGCATCATGCCGCAGCTGCT
GCTGGAGCTGGTGGGGTCCTCCGGGCGCTTGGGCGGGGTCGGGGGCAGCC
ACAGGCTTTCGTACCTGCAGCATCGTCCGCCGGGAGCTGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16158:349..789+

>mRNA_E-fasciculatus_F_contig16158.4201.1 ID=mRNA_E-fasciculatus_F_contig16158.4201.1|Name=mRNA_E-fasciculatus_F_contig16158.4201.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=882bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16158:349..789+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCTCACCGCGCCCGCCGCCCCGCCCCGCCCCGCCCCGCCGCAGACGAA
CCACCCCCTGGATCCCCTCGTGGCGCTGGCGGGGAACATCCAGTGCCTCT
TCCAGTCGGTCAACGACGAGAACCTTGACGTGAGACGGAGCGCGGCGCGG
GTGGTCGGGAGGGCCTCGAGGCAGCAGTCCACCATGGTGATGCCCTTCGT
GAGGGTGGCGCTCGTGCAGCTCGGGAGGCACCTGGACGTGTCCCAGGACC
CGCTGGTGAAACGGGAGCGCATCCTTATCCTTACGGACCTGCTCACCTCG
GCCGGGTCTCTGGTCCGGCCGTACGTGTCGAGCATCATGCCGCAGCTGCT
GCTGGAGCTGGTGGGGTCCTCCGGGCGCTTGGGCGGGGTCGGGGGCAGCC
ACAGGCTTTCGTACCTGCAGCATCGTCCGCCGGGAGCTGGTCTGCTCACC
GCGCCCGCCGCCCCGCCCCGCCCCGCCCCGCCGCAGACGAACCACCCCCT
GGATCCCCTCGTGGCGCTGGCGGGGAACATCCAGTGCCTCTTCCAGTCGG
TCAACGACGAGAACCTTGACGTGAGACGGAGCGCGGCGCGGGTGGTCGGG
AGGGCCTCGAGGCAGCAGTCCACCATGGTGATGCCCTTCGTGAGGGTGGC
GCTCGTGCAGCTCGGGAGGCACCTGGACGTGTCCCAGGACCCGCTGGTGA
AACGGGAGCGCATCCTTATCCTTACGGACCTGCTCACCTCGGCCGGGTCT
CTGGTCCGGCCGTACGTGTCGAGCATCATGCCGCAGCTGCTGCTGGAGCT
GGTGGGGTCCTCCGGGCGCTTGGGCGGGGTCGGGGGCAGCCACAGGCTTT
CGTACCTGCAGCATCGTCCGCCGGGAGCTGGT
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