mRNA_E-fasciculatus_F_contig16156.4200.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16156.4200.1
Unique NamemRNA_E-fasciculatus_F_contig16156.4200.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16156.4200.1 vs. uniprot
Match: A0A6H5JSV0_9PHAE (TRUD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV0_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.180e-30
Identity = 95/124 (76.61%), Postives = 99/124 (79.84%), Query Frame = 3 
Query:  162 ESPGIDAEIAADRGRAEEIGAVRGPKGGMPAPTTAAWLRARFRAEVKRRFKGASGGXXXXXXXXXXXXXXXXXXXXXXGNVTPIRVSFSLPLGAYATTLLQHVTGEGLDGRKKAWHTSSSRGRG 533
            ESP IDAE+AADR RAEEIGAVRGP+GGMPAP TAAWLRARFRAEVKRRFKGA+GGXXXXXXXXXXXXXXXXXXXXXX N+TPIRVSFSLPLGA                 KKAWHT S  G G
Sbjct:  317 ESPDIDAEVAADRARAEEIGAVRGPRGGMPAPITAAWLRARFRAEVKRRFKGANGGXXXXXXXXXXXXXXXXXXXXXX-NMTPIRVSFSLPLGA-----------------KKAWHTGSRGGGG 422
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BLAST of mRNA_E-fasciculatus_F_contig16156.4200.1 vs. uniprot
Match: D7FYR3_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR3_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.350e-18
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:    2 GNSVMFPLNPVGEEMLMSLKRDGVDDVILNGHPQKAFDLEGAYRRXXXXXXXDR 163
            GNSVMFPLNPVGEEML+SLK+DGVDDVILNGHPQKAFDLEGAYR        DR
Sbjct:  519 GNSVMFPLNPVGEEMLVSLKQDGVDDVILNGHPQKAFDLEGAYRHVMNHQTYDR 572
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16156.4200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSV0_9PHAE5.180e-3076.61TRUD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FYR3_ECTSI1.350e-1881.48Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16156contigE-fasciculatus_F_contig16156:1449..2807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPseudouridine synthase, TruD
Ec32 orthologEc-26_004180.1
Hectar predicted targeting categoryother localisation
Exons2
Model size533
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16156.4200.1prot_E-fasciculatus_F_contig16156.4200.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16156 1449..2733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928080.192998-CDS-E-fasciculatus_F_contig16156:1448..18491622928080.192998-CDS-E-fasciculatus_F_contig16156:1448..1849Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16156 1449..1849 -
1695995815.507812-CDS-E-fasciculatus_F_contig16156:1448..18491695995815.507812-CDS-E-fasciculatus_F_contig16156:1448..1849Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16156 1449..1849 -
1622928080.2070758-CDS-E-fasciculatus_F_contig16156:2675..27331622928080.2070758-CDS-E-fasciculatus_F_contig16156:2675..2733Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16156 2676..2733 -
1695995815.5181806-CDS-E-fasciculatus_F_contig16156:2675..27331695995815.5181806-CDS-E-fasciculatus_F_contig16156:2675..2733Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16156 2676..2733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928080.2209718-UTR-E-fasciculatus_F_contig16156:2733..28071622928080.2209718-UTR-E-fasciculatus_F_contig16156:2733..2807Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16156 2734..2807 -
1695995815.528075-UTR-E-fasciculatus_F_contig16156:2733..28071695995815.528075-UTR-E-fasciculatus_F_contig16156:2733..2807Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16156 2734..2807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16156.4200.1

>prot_E-fasciculatus_F_contig16156.4200.1 ID=prot_E-fasciculatus_F_contig16156.4200.1|Name=mRNA_E-fasciculatus_F_contig16156.4200.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=153bp
MTSSSTGTRRRRSTWRGRTEEEEEEEEETESPGIDAEIAADRGRAEEIGA
VRGPKGGMPAPTTAAWLRARFRAEVKRRFKGASGGGGGGGVGRGETAVAV
AGGGEGGGNVTPIRVSFSLPLGAYATTLLQHVTGEGLDGRKKAWHTSSSR
GRG
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mRNA from alignment at E-fasciculatus_F_contig16156:1449..2807-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16156.4200.1 ID=mRNA_E-fasciculatus_F_contig16156.4200.1|Name=mRNA_E-fasciculatus_F_contig16156.4200.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1359bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16156:1449..2807- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCAATTCCGTCATGTTTCCTTTGAATCCCGTGGGAGAGGAGATGCTCA
TGTCGCTCAAGCGGGACGGTGTTGATGACGTCATCCTCAACGGGCACCCG
CAGAAGGCGTTCGACTTGGAGGGGGCGTACCGGCACGTCATGGTACGTTT
TGTTCACTGGCAAATACCATGGTAACGGAGGACTACCTAGCCATGATATG
TTCAATAGAAAACACGAATACAGGACAGGAGGACTGCCCAAATCGACGAG
GGGGTGTTGACGTATTGAGAACATTTGCTGGATAAATCGGCATATTTTGA
GTCTGCAAATACTGAAGTATCACTCATACCCGCCGCAACGAAAACACCAT
GTGTGTGTATGATTGTGGCTGTCGTATGTCGTGTGCGTGTTTGTGCGTGG
TTGGGTCGGTTGTTTCTGTACCAATTGTTCTCGCTATTTCGACCCTTTTC
ATTGCTATTGTTGCCGAGACCTCTGATGTGTTGCGTTCTTGCACGAAAAC
TATCTCAAACACACGATCGATCGATGCGTTTCTTCATAAAGATTCCTATG
GTATGGAAGACAGATGAAGAAGTGCTGTAGCCATCTGTGCACTACAAAAG
TAGGAAAGATAGATGGAGTGGAGTACCTGATTAGTTCATCAGCAAAAACC
TGTACTATTCCAAAGCCACCTGCGGAGATGGGGAGTGAGAATGCCTTCGG
ACTCCCCTACCCTTTCCCTCCGGTGTCACTCTGTCTCGCTTCCGAGACCT
TCTCCTTGCGAAATCTCGAAAAACATACATATGATAACTGCCAGCCCCCG
GTGTAGTGGGCAAAGGCCATCACCACCACCTAGCTAGGTCTCCTTTCTAT
CAAGGGAAGCCTGTGTCCTTACCCCTACCCCCCCTCAACAAACAATCAAC
ACACAGGTGCACCCGCGAGATTTCGCCGTGAAGCCGGAGCCACCAGCAGC
AGCGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACAGAGTCACCGGGCA
TCGACGCCGAGATCGCCGCCGACAGAGGTCGGGCGGAAGAGATCGGCGCC
GTCAGGGGGCCCAAGGGAGGGATGCCGGCCCCCACCACAGCGGCGTGGCT
ACGGGCGCGCTTCCGCGCGGAGGTCAAGCGGCGATTCAAGGGCGCTAGCG
GCGGCGGCGGCGGCGGCGGTGTTGGCCGTGGCGAAACAGCAGTAGCGGTA
GCCGGAGGGGGGGAGGGGGGGGGCAACGTGACGCCAATAAGGGTGTCGTT
TTCGTTGCCTCTGGGGGCGTACGCCACGACTCTGCTGCAGCACGTCACCG
GGGAAGGGTTGGATGGCAGGAAGAAGGCCTGGCACACGAGTAGTAGTAGG
GGGAGAGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16156:1449..2807-

>mRNA_E-fasciculatus_F_contig16156.4200.1 ID=mRNA_E-fasciculatus_F_contig16156.4200.1|Name=mRNA_E-fasciculatus_F_contig16156.4200.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=918bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16156:1449..2807- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGTCATCCTCAACGGGCACCCGCAGAAGGCGTTCGACTTGGAGGGG
GCGTACCGATGACGTCATCCTCAACGGGCACCCGCAGAAGGCGTTCGACT
TGGAGGGGGCGTACCGAAGAAGAAGAAGAAGAAGAAGAAGAGACAGAGTC
ACCGGGCATCGACGCCGAGATCGCCGCCGACAGAGGTCGGGCGGAAGAGA
TCGGCGCCGTCAGGGGGCCCAAGGGAGGGATGCCGGCCCCCACCACAGCG
GCGTGGCTACGGGCGCGCTTCCGCGCGGAGGTCAAGCGGCGATTCAAGGG
CGCTAGCGGCGGCGGCGGCGGCGGCGGTGTTGGCCGTGGCGAAACAGCAG
TAGCGGTAGCCGGAGGGGGGGAGGGGGGGGGCAACGTGACGCCAATAAGG
GTGTCGTTTTCGTTGCCTCTGGGGGCGTACGCCACGACTCTGCTGCAGCA
CGTCACCGGGGAAGGGTTGGATGGCAGGAAGAAGGCCTGGCACACGAGTA
GTAGTAGGGGGAGAGGCAAGAAGAAGAAGAAGAAGAAGAAGAGACAGAGT
CACCGGGCATCGACGCCGAGATCGCCGCCGACAGAGGTCGGGCGGAAGAG
ATCGGCGCCGTCAGGGGGCCCAAGGGAGGGATGCCGGCCCCCACCACAGC
GGCGTGGCTACGGGCGCGCTTCCGCGCGGAGGTCAAGCGGCGATTCAAGG
GCGCTAGCGGCGGCGGCGGCGGCGGCGGTGTTGGCCGTGGCGAAACAGCA
GTAGCGGTAGCCGGAGGGGGGGAGGGGGGGGGCAACGTGACGCCAATAAG
GGTGTCGTTTTCGTTGCCTCTGGGGGCGTACGCCACGACTCTGCTGCAGC
ACGTCACCGGGGAAGGGTTGGATGGCAGGAAGAAGGCCTGGCACACGAGT
AGTAGTAGGGGGAGAGGC
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