mRNA_E-fasciculatus_F_contig16154.4199.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16154.4199.1
Unique NamemRNA_E-fasciculatus_F_contig16154.4199.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16154.4199.1 vs. uniprot
Match: A0A6H5L3R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R2_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.040e-25
Identity = 52/64 (81.25%), Postives = 55/64 (85.94%), Query Frame = 3 
Query:    6 APTRCGSSRAPLRATPGDSTSVNVRVRHGNRRRVSGLLRAAAVGRGGRRVHERRNRCCALVHDE 197
            AP+ CGSS APL ATPGD TSVNVR+  G+RR VSGLLRAA VGRGGRRVHERRNRCCA VHDE
Sbjct:   13 APSYCGSSSAPLHATPGDFTSVNVRICGGDRRSVSGLLRAA-VGRGGRRVHERRNRCCAPVHDE 75
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16154.4199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3R2_9PHAE3.040e-2581.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16154contigE-fasciculatus_F_contig16154:125..1710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002160.1
Exons2
Model size228
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928080.1344876-CDS-E-fasciculatus_F_contig16154:124..2851622928080.1344876-CDS-E-fasciculatus_F_contig16154:124..285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16154 125..285 -
1695995815.481588-CDS-E-fasciculatus_F_contig16154:124..2851695995815.481588-CDS-E-fasciculatus_F_contig16154:124..285Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16154 125..285 -
1622928080.1492534-CDS-E-fasciculatus_F_contig16154:1643..17101622928080.1492534-CDS-E-fasciculatus_F_contig16154:1643..1710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16154 1644..1710 -
1695995815.4929042-CDS-E-fasciculatus_F_contig16154:1643..17101695995815.4929042-CDS-E-fasciculatus_F_contig16154:1643..1710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16154 1644..1710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16154.4199.1prot_E-fasciculatus_F_contig16154.4199.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16154 125..1710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16154.4199.1

>prot_E-fasciculatus_F_contig16154.4199.1 ID=prot_E-fasciculatus_F_contig16154.4199.1|Name=mRNA_E-fasciculatus_F_contig16154.4199.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
MLPRRAAVVAGLLYALPLATPQASTCEFVTVTGGASPGSYALLQSDGEGD
VYTNGETGAALLYTTSSIRRGRRRRL
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mRNA from alignment at E-fasciculatus_F_contig16154:125..1710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16154.4199.1 ID=mRNA_E-fasciculatus_F_contig16154.4199.1|Name=mRNA_E-fasciculatus_F_contig16154.4199.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1586bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16154:125..1710- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCCCCGACGCGCTGCGGTAGTAGCAGGGCTCCTCTACGCGCTACC
CCTGGCGACTCCACAAGGTGACGAGCACGACCGAACATCTGGACACAGGG
CGATGTTTTTCATGCGGAGGAAATGTGTCGGGAGAATTTGCAGCTGGAAC
GAATATGTGAATGTGTGTCATATCACACCAGTTGTGTATGACCTCTTTCT
TCTTTCTTCTCACCCTCCCACCCGGCCGTCCGGCACCCCAACATTCCCGA
CGTTAACCTGGGTTTTGCCAGAACATGCGTTTTTCGAACTACTGTACACT
GCTTTCAGCGAGCAGGCCGAGAACGGCGGAAGAATCTGTGTACGTGTTCT
GTCGACTCTTGTATATTTTTGCAGCACAAACGTGAGAACTTTGATTTTCG
TGCAGCAGCAGCAGTTCTACAACATCGTCTTGATTCTCCCAGAGGGCTAA
TTTCACCCTCTACCCTTGCTATTTTATAGCACTACTGCTGTGCACTCGTA
CGCCTTATCGATGTATCGGGCTGCCCGATGTGTAGCTTGCGCTTCTTTCT
CCCCAATAAATAGACCTGCAAACAGGTGGTGTCAGTCATGATTTCTTTCC
CTCATGCGTCGTGCCCCGCACGATACAATAGGAGAGGAGAGAACGGTTGA
GCGTCGGTCGACTGAGTGAGGTTATTGCGCGGCCGCAACCTGTACCGCTG
AGCCTTTCACTATGCATAATTTATTACTGCTAAATAGATATTGGGTGACG
GAGCTCACGCATCGACTACCATATTTGTTGGAGGAAATGAACATACAATC
ACAGAGAGACTGCCCGTTCGACAACAGCAGTCGAAGGGAATATTATATTT
TTAAGTCCGGCCGGATAGTGGGCTTCTTGGTTGTTCTTTGAAAGAGTTTT
TGTTGCTCGCTAGGGAACGCGTTCGAGAGCGTGCGCTCGAGGAACTCGAG
GAAAGGAAGTCCCCTTTAGGGTTGGGGCTAGGGTTCGGAAGCGAAAACGG
AGTACATGCGCCACGGAGGGTTGTTGTTATTTTACAGGAGAGCAACACCC
GGTGCAATCCAATCAAGCCCGGTGCAATTCCAATCAAAAGTTCGAAAGGG
CTGTCCTGTTTGACCCCGCGAGCGGGTCGCTTCATCTAGAGAGGCACACG
CTGCACGGGAAGCATAAAGACGAAAGAAAACGAGTGAGTCGGCGTTCAAC
GCTCAAGTTCTACTTACTGCTGCGCGTGTTTCTTTTTCGCTGTGATCGAG
TGTTTTTCTTACTGAAAAAAATCTCTCGTCTTTTACAAGTACACGCCGTC
TCGAGAGAAAAAGTCCAGTTTTTTTTGTCGTTAATTTTTGTGTTGATCAA
TCGTCTTTTTCACAAACGCAAACGCCACGCGCCACCCTTTCGCCCCCCAA
CGAAACAACGGTATCGTATCGACAGCGTCAACGTGCGAGTTCGTCACGGT
AACCGGAGGCGCGTCTCCGGGCTCTTACGCGCTGCTGCAGTCGGACGGGG
AGGGCGACGTGTACACGAACGGCGAAACCGGTGCTGCGCTCTTGTACACG
ACGAGTAGCATCCGGCGCGGCAGGCGGCGGCGCCTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16154:125..1710-

>mRNA_E-fasciculatus_F_contig16154.4199.1 ID=mRNA_E-fasciculatus_F_contig16154.4199.1|Name=mRNA_E-fasciculatus_F_contig16154.4199.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16154:125..1710- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCCCCGACGCGCTGCGGTAGTAGCAGGGCTCCTCTACGCGCTACC
CCTGGCGACTCCACAAGATGCTGCCCCGACGCGCTGCGGTAGTAGCAGGG
CTCCTCTACGCGCTACCCCTGGCGACTCCACAAGCGTCAACGTGCGAGTT
CGTCACGGTAACCGGAGGCGCGTCTCCGGGCTCTTACGCGCTGCTGCAGT
CGGACGGGGAGGGCGACGTGTACACGAACGGCGAAACCGGTGCTGCGCTC
TTGTACACGACGAGTAGCATCCGGCGCGGCAGGCGGCGGCGCCTTCGTCA
ACGTGCGAGTTCGTCACGGTAACCGGAGGCGCGTCTCCGGGCTCTTACGC
GCTGCTGCAGTCGGACGGGGAGGGCGACGTGTACACGAACGGCGAAACCG
GTGCTGCGCTCTTGTACACGACGAGTAGCATCCGGCGCGGCAGGCGGCGG
CGCCTT
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