mRNA_E-fasciculatus_F_contig16151.4198.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16151.4198.1
Unique NamemRNA_E-fasciculatus_F_contig16151.4198.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16151.4198.1 vs. uniprot
Match: D7FYJ6_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ6_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 6.950e-33
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:  139 SALSGKFKIGKKAVRWLPKWPSLSKAQQGSDPPPQFRDYPSQISLMRDSSPIRSGLERGRGSVGDMAGA 345
            SALSGKFKIGKKAVRWLPKWPSLSKAQQG+DPPPQ+RDYPSQ SLMRD+SPIRSGLER RGSVGDM+GA
Sbjct: 1130 SALSGKFKIGKKAVRWLPKWPSLSKAQQGADPPPQYRDYPSQSSLMRDASPIRSGLERSRGSVGDMSGA 1198
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BLAST of mRNA_E-fasciculatus_F_contig16151.4198.1 vs. uniprot
Match: A0A6H5K2T8_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.680e-16
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:  139 SALSGKFKIGKKAVRWLPKWPSLSKAQQGSDPPPQFRDYPSQISLMR 279
            SA SGKFKIGKKAVRWLPKWPSLSKAQQ   PPP+++DYPSQISL++
Sbjct:  918 SAFSGKFKIGKKAVRWLPKWPSLSKAQQEVVPPPRYQDYPSQISLVK 964
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16151.4198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYJ6_ECTSI6.950e-3391.30Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5K2T8_9PHAE6.680e-1680.85Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16151contigE-fasciculatus_F_contig16151:18..936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue8.2e-29
Seed eggNOG ortholog2880.D7FYJ6
Preferred nameTOR1
KEGG koko:K07203
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04072,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map04012,map04066,map04072,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size383
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16151.4198.1prot_E-fasciculatus_F_contig16151.4198.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16151 18..934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928080.066974-CDS-E-fasciculatus_F_contig16151:17..621622928080.066974-CDS-E-fasciculatus_F_contig16151:17..62Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16151 18..62 +
1695995815.427402-CDS-E-fasciculatus_F_contig16151:17..621695995815.427402-CDS-E-fasciculatus_F_contig16151:17..62Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16151 18..62 +
1622928080.0814655-CDS-E-fasciculatus_F_contig16151:342..5701622928080.0814655-CDS-E-fasciculatus_F_contig16151:342..570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16151 343..570 +
1695995815.4522169-CDS-E-fasciculatus_F_contig16151:342..5701695995815.4522169-CDS-E-fasciculatus_F_contig16151:342..570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16151 343..570 +
1622928080.0941217-CDS-E-fasciculatus_F_contig16151:826..9341622928080.0941217-CDS-E-fasciculatus_F_contig16151:826..934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16151 827..934 +
1695995815.4649782-CDS-E-fasciculatus_F_contig16151:826..9341695995815.4649782-CDS-E-fasciculatus_F_contig16151:826..934Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16151 827..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16151.4198.1

>prot_E-fasciculatus_F_contig16151.4198.1 ID=prot_E-fasciculatus_F_contig16151.4198.1|Name=mRNA_E-fasciculatus_F_contig16151.4198.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
EYGGVLEDDDAKREQAQASAAAAAPSSAGMDLPPPTNTTATATTSSSALS
GKFKIGKKAVRWLPKWPSLSKAQQGSDPPPQFRDYPSQISLMRDSSPIRS
GLERGRGSVGDMAGAAGAASGGGGHGG
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mRNA from alignment at E-fasciculatus_F_contig16151:18..936+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16151.4198.1 ID=mRNA_E-fasciculatus_F_contig16151.4198.1|Name=mRNA_E-fasciculatus_F_contig16151.4198.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=919bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16151:18..936+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAATATGGGGGGGTATTGGAAGACGACGACGCAAAGCGAGAACAGGTCAG
TCTCTTGCACTACGGCTGTTGTTGTTGTTGTTGTTGTTGTGGGCTCTTGC
AGTTGCTGTTGGAGACGTTTGTTTGCTCTTGCCAGCCAGCAAGCACGACC
AACCAGCCTTCAAAAACCTCGTTGAATTCAATCGACATCGACGAGCTGCG
TGATTGACCGGCCCCCTTGTTTCCTCTTGTTTCCTCATGTTTCCTTTTCT
CTCTCCCCTCTCTCTCTTCTCAACCCAACCCAATCCTGCCTCGCTTCGGC
CGAAAAACAACGACACATTCCGCAGGCGCAGGCTTCCGCCGCAGCTGCTG
CTCCTTCTTCCGCAGGGATGGACTTGCCCCCGCCGACAAACACGACGGCC
ACGGCCACGACGTCGTCATCAGCGTTGTCGGGGAAGTTTAAGATTGGGAA
GAAGGCTGTTCGTTGGCTGCCCAAGTGGCCGTCTCTCAGCAAGGCTCAGC
AGGGGAGTGATCCCCCGCCGCAGTTCCGGGACTACCCCAGCCAGATTTCT
CTGGTGGGAGGACGTTGTTGTTGTTGTTGTTGTTGTTGTCGTTGTCGTTG
TCGTCGTCGTGCATGACAAATTTGATTTTTGGTGGTGTGTTTCTAGTTGA
TGCTGTGGTGGCCATGATGGCCGCCCCGTCGCTCCTGGCTGTTGACCCTC
TCGACCTCATGGACCTAGTACCCGCCCCCCACCCCCACAGTGACGGGACC
CCCGTGTAACCGCCACCCCGCCCCACCGTCGCTGATAACATCACCCCCCC
CCCCTACAGATGAGAGATTCTTCCCCCATACGCTCGGGCCTGGAGCGCGG
CAGGGGCAGCGTGGGGGATATGGCGGGGGCGGCGGGAGCGGCCAGCGGCG
GCGGTGGACATGGAGGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16151:18..936+

>mRNA_E-fasciculatus_F_contig16151.4198.1 ID=mRNA_E-fasciculatus_F_contig16151.4198.1|Name=mRNA_E-fasciculatus_F_contig16151.4198.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16151:18..936+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAATATGGGGGGGTATTGGAAGACGACGACGCAAAGCGAGAACAGGAATA
TGGGGGGGTATTGGAAGACGACGACGCAAAGCGAGAACAGGCGCAGGCTT
CCGCCGCAGCTGCTGCTCCTTCTTCCGCAGGGATGGACTTGCCCCCGCCG
ACAAACACGACGGCCACGGCCACGACGTCGTCATCAGCGTTGTCGGGGAA
GTTTAAGATTGGGAAGAAGGCTGTTCGTTGGCTGCCCAAGTGGCCGTCTC
TCAGCAAGGCTCAGCAGGGGAGTGATCCCCCGCCGCAGTTCCGGGACTAC
CCCAGCCAGATTTCTCTGGCGCAGGCTTCCGCCGCAGCTGCTGCTCCTTC
TTCCGCAGGGATGGACTTGCCCCCGCCGACAAACACGACGGCCACGGCCA
CGACGTCGTCATCAGCGTTGTCGGGGAAGTTTAAGATTGGGAAGAAGGCT
GTTCGTTGGCTGCCCAAGTGGCCGTCTCTCAGCAAGGCTCAGCAGGGGAG
TGATCCCCCGCCGCAGTTCCGGGACTACCCCAGCCAGATTTCTCTGATGA
GAGATTCTTCCCCCATACGCTCGGGCCTGGAGCGCGGCAGGGGCAGCGTG
GGGGATATGGCGGGGGCGGCGGGAGCGGCCAGCGGCGGCGGTGGACATGG
AGGCATGAGAGATTCTTCCCCCATACGCTCGGGCCTGGAGCGCGGCAGGG
GCAGCGTGGGGGATATGGCGGGGGCGGCGGGAGCGGCCAGCGGCGGCGGT
GGACATGGAGGC
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