mRNA_E-fasciculatus_F_contig16147.4194.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16147.4194.1
Unique NamemRNA_E-fasciculatus_F_contig16147.4194.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16147.4194.1 vs. uniprot
Match: A0A6H5K9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N2_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 2.160e-59
Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:   31 VVGGVAVCRRLCCKSSVNYTAVNHSLDEEEIAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMLQMYRSNLGVPADPRGVETGLGKDGAAA 327
            VVGGVAVCRRLCCK++VNYTAVNHSLDEEE AFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEM+QMYRSNLGVPA+PRGVETGLGKDGAAA
Sbjct:   25 VVGGVAVCRRLCCKTAVNYTAVNHSLDEEETAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMMQMYRSNLGVPANPRGVETGLGKDGAAA 123
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BLAST of mRNA_E-fasciculatus_F_contig16147.4194.1 vs. uniprot
Match: D8LB60_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB60_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 1.790e-56
Identity = 93/99 (93.94%), Postives = 96/99 (96.97%), Query Frame = 1 
Query:   31 VVGGVAVCRRLCCKSSVNYTAVNHSLDEEEIAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMLQMYRSNLGVPADPRG-VETGLGKDGAA 324
            VVGGVAVCRRL CK++VNYTAVNHSLDEEEIAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMLQMYRSNLG PA+PRG VETGLGKDGAA
Sbjct:   25 VVGGVAVCRRLLCKTAVNYTAVNHSLDEEEIAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMLQMYRSNLGFPANPRGGVETGLGKDGAA 123
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BLAST of mRNA_E-fasciculatus_F_contig16147.4194.1 vs. uniprot
Match: A0A7S2V8A7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8A7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.050e-15
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   40 GVAVCRRLCCKSSVNYTAVNHSLDEEEIAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMLQMYRSNLGVPA 279
            G+  C +   +S V Y AV H LD++E+ FK +LE +  G D ID+LF+F GQD++EFD  DLDNLE L+ YR NL   A
Sbjct:   27 GIRRCNKCKRRSQVPYNAVAHELDDDELLFKKTLEMK--GDDVIDKLFDFDGQDDMEFDAKDLDNLESLESYRKNLVASA 104
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BLAST of mRNA_E-fasciculatus_F_contig16147.4194.1 vs. uniprot
Match: A0A7S2RGQ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGQ9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.040e-13
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:   70 KSSVNYTAVNHSLDEEEIAFKNSLEAQNEGGDDIDELFNFS--GQDELEFDTNDLDNLEMLQMYRSNL-----GVPADPRGVET-------GLGKDGAA 324
            K    YT V+H LD+EE AFK +LE Q    D+ID+LFNF+  G  E+EFD ++L+ +EML+ YRSNL     G     +G ET       G+G DGAA
Sbjct:   82 KKDYRYTMVHHGLDDEEQAFKRNLETQT---DEIDDLFNFTADGDQEIEFDASELEQIEMLENYRSNLVAASSGAAVPGKGTETRGAGLSNGMGGDGAA 177
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BLAST of mRNA_E-fasciculatus_F_contig16147.4194.1 vs. uniprot
Match: A0A836C8T1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8T1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.910e-9
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   76 SVNYTAVNHSLDEEEIAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMLQMYRSNL 267
            + +Y AVNH LD+EE+ FK  ++  +   ++IDELFNFS  D+L FD  +L  +EML  YR +L
Sbjct:   39 NASYQAVNHGLDDEELQFKKRMDEMH--AEEIDELFNFSPDDDLAFDAEELGQIEMLDAYRKDL 100
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16147.4194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K9N2_9PHAE2.160e-5994.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB60_ECTSI1.790e-5693.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2V8A7_9STRA2.050e-1550.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2RGQ9_9STRA6.040e-1346.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836C8T1_9STRA7.910e-946.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16147contigE-fasciculatus_F_contig16147:1450..2394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928079.6859958-CDS-E-fasciculatus_F_contig16147:1449..15271622928079.6859958-CDS-E-fasciculatus_F_contig16147:1449..1527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16147 1450..1527 -
1695995815.2714531-CDS-E-fasciculatus_F_contig16147:1449..15271695995815.2714531-CDS-E-fasciculatus_F_contig16147:1449..1527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16147 1450..1527 -
1622928079.6981685-CDS-E-fasciculatus_F_contig16147:2145..23941622928079.6981685-CDS-E-fasciculatus_F_contig16147:2145..2394Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16147 2146..2394 -
1695995815.2797322-CDS-E-fasciculatus_F_contig16147:2145..23941695995815.2797322-CDS-E-fasciculatus_F_contig16147:2145..2394Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16147 2146..2394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16147.4194.1prot_E-fasciculatus_F_contig16147.4194.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16147 1450..2394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16147.4194.1

>prot_E-fasciculatus_F_contig16147.4194.1 ID=prot_E-fasciculatus_F_contig16147.4194.1|Name=mRNA_E-fasciculatus_F_contig16147.4194.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
MRTPLPRPQKVVGGVAVCRRLCCKSSVNYTAVNHSLDEEEIAFKNSLEAQ
NEGGDDIDELFNFSGQDELEFDTNDLDNLEMLQMYRSNLGVPADPRGVET
GLGKDGAAA
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mRNA from alignment at E-fasciculatus_F_contig16147:1450..2394-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16147.4194.1 ID=mRNA_E-fasciculatus_F_contig16147.4194.1|Name=mRNA_E-fasciculatus_F_contig16147.4194.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=945bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16147:1450..2394- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGAACACCCCTCCCTCGCCCTCAAAAGGTTGTCGGAGGCGTGGCCGT
GTGCCGAAGACTCTGCTGCAAGTCGTCGGTGAACTACACGGCCGTGAACC
ACAGCCTCGACGAGGAGGAGATCGCCTTCAAGAACTCGTTGGAGGCGCAG
AACGAGGGGGGCGACGACATCGACGAGCTGTTCAACTTCTCGGGCCAAGA
TGAGCTGGAGTTCGACACGAACGACTTGGATAACTTGGAGATGCTACAGG
TCTCCGTCTTGAGAAAAAGAACCGTGTTGTTAAGTTTTGTTACCGCCGTC
GGTTGCGATAGAATAGCGGTAACCGACTTGCCCCCATCGACGATGAATAC
CCTTCGCCTCACGTGTAGTTTCGAACGTCGCAAGTTTGGGGGCTGGAAAT
GTGCGGTTCCGTACAGTACCACTGAGCGATGGAACAGTGTAGTCACTGTG
GCCTCTAGCTGCGGGCAACCGATGCCCGTTGTTCTTGTTCCGTACGTTGC
CTCTGAAGGCGAGTATGTTCGTGCTCCAGCAGGAGAAGGCGGCCTTCCCT
ACACATATGCGCACGGTTGCGAGACTCGTGTTCGCTACTTGGGCCTCCTT
GGTGGTGTGTAGTCATTCACCCCGTACGTGCACAGCTCCCCCCCGATACA
CCCCTACGGTTTGGGCTGCATGCGCTAAATAAACACACCACATCTTGGTC
CGTGCTCAATCTTCCACCCCCGTAGACAGCTCTTTAAACAGCCCCCCCCA
CACGACTGTCCCTCATCCTCAAATACTCTCTGCTGTCCTACCCCGTGCAG
TCGGCCCTCCCTCCCTCACGCGAGCCACCTTGAACGGCCGCCTCCCTCGT
TGCCCTTGCCCGCCCAGATGTACCGGTCAAACCTGGGAGTTCCAGCTGAC
CCTCGAGGGGTAGAAACGGGGCTCGGGAAGGATGGCGCCGCTGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16147:1450..2394-

>mRNA_E-fasciculatus_F_contig16147.4194.1 ID=mRNA_E-fasciculatus_F_contig16147.4194.1|Name=mRNA_E-fasciculatus_F_contig16147.4194.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16147:1450..2394- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGAACACCCCTCCCTCGCCCTCAAAAGGTTGTCGGAGGCGTGGCCGT
GTGCCGAAGACTCTGCTGCAAGTCGTCGGTGAACTACACGGCCGTGAACC
ACAGCCTCGACGAGGAGGAGATCGCCTTCAAGAACTCGTTGGAGGCGCAG
AACGAGGGGGGCGACGACATCGACGAGCTGTTCAACTTCTCGGGCCAAGA
TGAGCTGGAGTTCGACACGAACGACTTGGATAACTTGGAGATGCTACAGA
TGAGAACACCCCTCCCTCGCCCTCAAAAGGTTGTCGGAGGCGTGGCCGTG
TGCCGAAGACTCTGCTGCAAGTCGTCGGTGAACTACACGGCCGTGAACCA
CAGCCTCGACGAGGAGGAGATCGCCTTCAAGAACTCGTTGGAGGCGCAGA
ACGAGGGGGGCGACGACATCGACGAGCTGTTCAACTTCTCGGGCCAAGAT
GAGCTGGAGTTCGACACGAACGACTTGGATAACTTGGAGATGCTACAGAT
GTACCGGTCAAACCTGGGAGTTCCAGCTGACCCTCGAGGGGTAGAAACGG
GGCTCGGGAAGGATGGCGCCGCTGCGATGTACCGGTCAAACCTGGGAGTT
CCAGCTGACCCTCGAGGGGTAGAAACGGGGCTCGGGAAGGATGGCGCCGC
TGCG
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