mRNA_E-fasciculatus_F_contig16142.4193.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Match: D8LF07_ECTSI (SGT1 homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF07_ECTSI) HSP 1 Score: 284 bits (727), Expect = 5.360e-93 Identity = 146/155 (94.19%), Postives = 149/155 (96.13%), Query Frame = 1
Query: 1 QLEVTMTKKTPADWPELEGAATPAARPAAAVTAADASSTSGAAPVEQPPTKVARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGAKLPQKDDDDN 465
+LEVTMTKK+PADWPELEGAA PAARPAAA TA DASSTSG A VEQPPTKVARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEG KLPQK+DDDN
Sbjct: 259 KLEVTMTKKSPADWPELEGAAIPAARPAAAATATDASSTSGEAAVEQPPTKVARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGEKLPQKEDDDN 413
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Match: A0A835ZF73_9STRA (SGS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF73_9STRA) HSP 1 Score: 175 bits (444), Expect = 9.630e-51 Identity = 92/156 (58.97%), Postives = 118/156 (75.64%), Query Frame = 1
Query: 1 QLEVTMTKKTPADWPELEGAATPAA---RPAAAVTAADASSTSGAAPVEQPPTKVARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGAKLPQKDDD 459
++E T+ K+ +WP+LEG+ P P A AA ++ +GA E+PP +PY+S +DWD +++++ KELEAEKP GE+ALN+LFK IY A+EDTRRAMVKSFQTSGGTVLSTNWDEV K DYEKE+QAPKGMEW+T+EG K+PQ DDD
Sbjct: 235 KIECTLKKQDAHNWPQLEGSGKPQKVIKPPPVAEAAAAEAAPAGAESQEKPP----KPYASHRDWDAIDRDISKELEAEKPEGEEALNELFKQIYKDANEDTRRAMVKSFQTSGGTVLSTNWDEVSKKDYEKEKQAPKGMEWRTYEGDKVPQIDDD 386
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Match: A0A7S1FSN7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSN7_9STRA) HSP 1 Score: 160 bits (404), Expect = 8.450e-47 Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1
Query: 145 PTKVARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGAKLPQKDDDD 462
P K+ RPY+S +DWD + K + ++ E+EK GE+ALN LF+ IY A+EDTRRAMVKSFQTSGGTVLSTNWDEVGK DYE+ERQAPKGMEW+TWEG KLPQK D+D
Sbjct: 102 PKKIPRPYASDRDWDAIGKSIDEQEESEKSEGEEALNRLFRQIYAGANEDTRRAMVKSFQTSGGTVLSTNWDEVGKTDYERERQAPKGMEWRTWEGQKLPQKKDED 207
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Match: A0A7S0AMY2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AMY2_9STRA) HSP 1 Score: 157 bits (397), Expect = 2.060e-46 Identity = 74/101 (73.27%), Postives = 89/101 (88.12%), Query Frame = 1
Query: 160 RPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGAKLPQKDDDD 462
RPY+S KDWD +E++++KE EAEKP GE+ALN LF+ IYGKAD++TRRAMVKS+QTSGGTVLSTNW+EV + DYEKERQAPKG EWK WEG +LPQKD+ D
Sbjct: 56 RPYASHKDWDAIERDLKKEEEAEKPEGEEALNKLFQQIYGKADDETRRAMVKSYQTSGGTVLSTNWNEVKEKDYEKERQAPKGQEWKDWEGHRLPQKDNAD 156
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Match: A0A7S0CJA1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CJA1_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.170e-45 Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 1
Query: 130 PVEQPPTKVARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGAKLPQKDDDD 462
P+ ++ ARPYSS +DWD +E+ ++K+ + EKP GE ALN LFK IYGKAD DTRRAM+KSFQTSGGTVLSTNWDEV K DYEKERQAPKGM+WK W+G +LPQKD DD
Sbjct: 259 PIPTVSSEKARPYSSHRDWDAIERNLEKDEKKEKPQGEDALNHLFKDIYGKADGDTRRAMIKSFQTSGGTVLSTNWDEVAKKDYEKERQAPKGMQWKQWDGKELPQKDHDD 369
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Match: A0A7S1FU25_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FU25_9STRA) HSP 1 Score: 160 bits (404), Expect = 3.500e-45 Identity = 75/106 (70.75%), Postives = 89/106 (83.96%), Query Frame = 1
Query: 145 PTKVARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGAKLPQKDDDD 462
P K+ RPY+S +DWD + K + ++ E+EK GE+ALN LF+ IY A+EDTRRAMVKSFQTSGGTVLSTNWDEVGK DYE+ERQAPKGMEW+TWEG KLPQK D+D
Sbjct: 241 PKKIPRPYASDRDWDAIGKSIDEQEESEKSEGEEALNRLFRQIYAGANEDTRRAMVKSFQTSGGTVLSTNWDEVGKTDYERERQAPKGMEWRTWEGQKLPQKKDED 346
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Match: A0A7S2LMA4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LMA4_9STRA) HSP 1 Score: 160 bits (405), Expect = 6.840e-45 Identity = 88/153 (57.52%), Postives = 110/153 (71.90%), Query Frame = 1
Query: 10 VTMTKKTPADWPELEGAATPAARPAAAVTAADASSTSGAAPVEQPPTKV----ARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGAKLPQKDD 456
+ + K+ DW EL G+ A AA+A+ T+ PVE+ V RPY+ST+DW+ +E++++KE E EKP GE+A+N LF+ IYG A+EDT+RAM+KSFQTSGGTVLSTNWDEV K DYEKERQAPKG EWK WEG KLPQKDD
Sbjct: 244 IKLRKRDKGDWHELFGSG--ARNKEDKSDAAEAAITT---PVEKNVPVVDKEKVRPYASTRDWEAIERDMKKEEENEKPEGEEAMNKLFQQIYGNANEDTKRAMIKSFQTSGGTVLSTNWDEVSKIDYEKERQAPKGQEWKNWEGQKLPQKDD 391
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Match: A0A7S2EEN1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EEN1_TRICV) HSP 1 Score: 151 bits (381), Expect = 2.400e-44 Identity = 74/103 (71.84%), Postives = 88/103 (85.44%), Query Frame = 1
Query: 145 PTKVARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGAKLPQKD 453
PTK ARPY+S ++W +E++++++ E EKP G++ALN LF+ IYGKADEDTRRAMVKSFQTSGGTVLSTNW EV K DYEKERQAPKGMEWK EG +LPQKD
Sbjct: 27 PTK-ARPYASHRNWSAIERDLKRQEEEEKPEGDEALNKLFRDIYGKADEDTRRAMVKSFQTSGGTVLSTNWSEVSKKDYEKERQAPKGMEWKDREGNRLPQKD 128
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Match: A0A6U2Y9T3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U2Y9T3_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.360e-43 Identity = 75/114 (65.79%), Postives = 91/114 (79.82%), Query Frame = 1
Query: 115 TSGAAPVEQPPTKVARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGAKLPQKDD 456
T A E+P +K+ARPY+S KDWD +EK++++E E EKP G+ A+N LF+ IY ADEDTRRAM+KS+QTSGGTVLSTNW EV + +YEKER APKGMEWK WEG KLP KDD
Sbjct: 228 TPAAPEAEKPASKLARPYASHKDWDSIEKDIEQEEEKEKPEGDAAMNKLFQQIYSNADEDTRRAMIKSYQTSGGTVLSTNWKEVEEKNYEKERTAPKGMEWKNWEGDKLPAKDD 341
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Match: A0A7S2SS77_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS77_9STRA) HSP 1 Score: 155 bits (393), Expect = 3.780e-43 Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 1
Query: 157 ARPYSSTKDWDVVEKEVQKELEAEKPGGEQALNDLFKSIYGKADEDTRRAMVKSFQTSGGTVLSTNWDEVGKADYEKERQAPKGMEWKTWEGAKLPQKDDD 459
A PY+S +DW+ V+K +Q+ELE EKP GE+ALN+LF+SIY KA E+TRRAM KSFQTSGGTVLSTNWDEV +DYEKERQAP GMEWKTWEG KLP K++D
Sbjct: 286 ATPYASKRDWNQVDKAMQEELEKEKPEGEEALNELFRSIYSKASEETRRAMNKSFQTSGGTVLSTNWDEVATSDYEKERQAPNGMEWKTWEGKKLPMKEED 386 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16142.4193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16142.4193.1 >prot_E-fasciculatus_F_contig16142.4193.1 ID=prot_E-fasciculatus_F_contig16142.4193.1|Name=mRNA_E-fasciculatus_F_contig16142.4193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=151bp MTKKTPADWPELEGAATPAARPAAAVTAADASSTSGAAPVEQPPTKVARPback to top mRNA from alignment at E-fasciculatus_F_contig16142:60..1993+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16142.4193.1 ID=mRNA_E-fasciculatus_F_contig16142.4193.1|Name=mRNA_E-fasciculatus_F_contig16142.4193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1934bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16142:60..1993+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16142:60..1993+ >mRNA_E-fasciculatus_F_contig16142.4193.1 ID=mRNA_E-fasciculatus_F_contig16142.4193.1|Name=mRNA_E-fasciculatus_F_contig16142.4193.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16142:60..1993+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |