mRNA_E-fasciculatus_F_contig16128.4189.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: D8LKM8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM8_ECTSI) HSP 1 Score: 176 bits (445), Expect = 7.380e-51 Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 3
Query: 3 PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPES 236
PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPC SLLHHLIQCPES
Sbjct: 437 PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCMSLLHHLIQCPES 514
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A6H5KT72_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT72_9PHAE) HSP 1 Score: 173 bits (439), Expect = 3.670e-49 Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3
Query: 9 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPES 236
LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPES
Sbjct: 564 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPES 639
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A7S1TU47_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU47_9STRA) HSP 1 Score: 112 bits (280), Expect = 3.940e-29 Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 3
Query: 9 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQC 227
+ ++++KLL+L+CHAR CPG HRS R AEVC+S+K+LMLH+RDC G+ +G PCP WC PC +LL HL++C
Sbjct: 122 MSPEKSSKLLILICHARTCPGKHRSRRHAEVCKSIKYLMLHIRDCSGRLPDGQPCPFEWCRPCKNLLSHLVKC 194
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A7S2C9V7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9V7_9STRA) HSP 1 Score: 106 bits (265), Expect = 5.430e-28 Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 3
Query: 21 QAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQC 227
QA+KLLVL+ HAR CPG+H S R +EVC+SVK+LMLH+RDC GKT +G C PWC+PC +LL HL++C
Sbjct: 27 QASKLLVLITHARTCPGHHMSHRHSEVCKSVKYLMLHIRDCCGKTSDGTECSFPWCKPCKALLAHLVRC 95
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A7R9YGR4_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGR4_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.390e-27 Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 3
Query: 6 TLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPE 233
+L D+++KLL+L+CHAR CPG HRS R AEVC+S+K+LMLH+RDC G+ +G CP WC PC LL HL++C E
Sbjct: 361 SLSPDKSSKLLILICHARTCPGKHRSKRHAEVCKSIKYLMLHIRDCSGRLPDGQSCPFEWCRPCKKLLSHLVKCFE 436
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A6H5KVY2_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY2_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.330e-26 Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 3
Query: 9 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPE 233
L + QA++LLVLM HAR CPG H + + AEVC+S KFLMLH+RDC G T +GDPC WC PC SLL HLI+CP+
Sbjct: 791 LSTFQASRLLVLMSHARTCPGRHANPKHAEVCQSTKFLMLHMRDCTGHTASGDPCEHRWCRPCKSLLSHLIRCPD 865
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A7S2KXT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KXT5_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.100e-22 Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query: 3 PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQC 227
P L+S AA+LLVLM HA CPG H++ R +VC SVK+LMLH+RDC G +GD CP PWC LL+HLI C
Sbjct: 647 PKLESADAAQLLVLMAHASICPGRHKNERHRQVCLSVKYLMLHVRDCPGTISSGDLCPFPWCRKVKHLLYHLISC 721
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: W7U3G5_9STRA (TAZ-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G5_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 5.150e-22 Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 3
Query: 21 QAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPES 236
QA+++L LM HAR CPG+H S VC S K+LMLH+RDCDGKT +G+ C WC PC LL HL++C ES
Sbjct: 553 QASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYES 624
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A7S4AF96_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AF96_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.280e-21 Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 3
Query: 3 PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPE 233
P ++ AAKLL+L+ HA CP H+S + ++CRSVK++MLH+RDC G T D CP PWC LL+HL+ C E
Sbjct: 292 PVFPNEHAAKLLILIGHAATCPCQHKSEKQRDICRSVKYMMLHVRDCPGTTSTFDVCPFPWCRKVKHLLYHLVACAE 368
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A448ZEC8_9STRA (TAZ-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEC8_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.370e-21 Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 3
Query: 3 PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPE 233
P L + A+KLL+LM HA CP H+ + +VCRSVK++MLH+RDC G T D CP PWC LL+HL+ C E
Sbjct: 947 PVLSDEHASKLLILMGHAATCPCQHKLEKHRDVCRSVKYMMLHVRDCPGTTSTFDVCPFPWCRKVKHLLYHLVSCKE 1023 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16128.4189.1 >prot_E-fasciculatus_F_contig16128.4189.1 ID=prot_E-fasciculatus_F_contig16128.4189.1|Name=mRNA_E-fasciculatus_F_contig16128.4189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=41bp DLPWTRIRPRSCWCLCATPGTARGITAPLGSQRCAEASSF*back to top mRNA from alignment at E-fasciculatus_F_contig16128:1022..1703+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16128.4189.1 ID=mRNA_E-fasciculatus_F_contig16128.4189.1|Name=mRNA_E-fasciculatus_F_contig16128.4189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=682bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16128:1022..1703+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16128:1022..1703+ >mRNA_E-fasciculatus_F_contig16128.4189.1 ID=mRNA_E-fasciculatus_F_contig16128.4189.1|Name=mRNA_E-fasciculatus_F_contig16128.4189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=246bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16128:1022..1703+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |