mRNA_E-fasciculatus_F_contig16128.4189.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16128.4189.1
Unique NamemRNA_E-fasciculatus_F_contig16128.4189.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: D8LKM8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM8_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 7.380e-51
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 3
Query:    3 PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPES 236
            PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPC SLLHHLIQCPES
Sbjct:  437 PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCMSLLHHLIQCPES 514          
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A6H5KT72_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT72_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.670e-49
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3
Query:    9 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPES 236
            LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPES
Sbjct:  564 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPES 639          
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A7S1TU47_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU47_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.940e-29
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 3
Query:    9 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQC 227
            +  ++++KLL+L+CHAR CPG HRS R AEVC+S+K+LMLH+RDC G+  +G PCP  WC PC +LL HL++C
Sbjct:  122 MSPEKSSKLLILICHARTCPGKHRSRRHAEVCKSIKYLMLHIRDCSGRLPDGQPCPFEWCRPCKNLLSHLVKC 194          
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A7S2C9V7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9V7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.430e-28
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 3
Query:   21 QAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQC 227
            QA+KLLVL+ HAR CPG+H S R +EVC+SVK+LMLH+RDC GKT +G  C  PWC+PC +LL HL++C
Sbjct:   27 QASKLLVLITHARTCPGHHMSHRHSEVCKSVKYLMLHIRDCCGKTSDGTECSFPWCKPCKALLAHLVRC 95          
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A7R9YGR4_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGR4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.390e-27
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    6 TLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPE 233
            +L  D+++KLL+L+CHAR CPG HRS R AEVC+S+K+LMLH+RDC G+  +G  CP  WC PC  LL HL++C E
Sbjct:  361 SLSPDKSSKLLILICHARTCPGKHRSKRHAEVCKSIKYLMLHIRDCSGRLPDGQSCPFEWCRPCKKLLSHLVKCFE 436          
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A6H5KVY2_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.330e-26
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 3
Query:    9 LDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPE 233
            L + QA++LLVLM HAR CPG H + + AEVC+S KFLMLH+RDC G T +GDPC   WC PC SLL HLI+CP+
Sbjct:  791 LSTFQASRLLVLMSHARTCPGRHANPKHAEVCQSTKFLMLHMRDCTGHTASGDPCEHRWCRPCKSLLSHLIRCPD 865          
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A7S2KXT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KXT5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.100e-22
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:    3 PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQC 227
            P L+S  AA+LLVLM HA  CPG H++ R  +VC SVK+LMLH+RDC G   +GD CP PWC     LL+HLI C
Sbjct:  647 PKLESADAAQLLVLMAHASICPGRHKNERHRQVCLSVKYLMLHVRDCPGTISSGDLCPFPWCRKVKHLLYHLISC 721          
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: W7U3G5_9STRA (TAZ-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.150e-22
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 3
Query:   21 QAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPES 236
            QA+++L LM HAR CPG+H S     VC S K+LMLH+RDCDGKT +G+ C   WC PC  LL HL++C ES
Sbjct:  553 QASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYES 624          
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A7S4AF96_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AF96_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.280e-21
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 3
Query:    3 PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPE 233
            P   ++ AAKLL+L+ HA  CP  H+S +  ++CRSVK++MLH+RDC G T   D CP PWC     LL+HL+ C E
Sbjct:  292 PVFPNEHAAKLLILIGHAATCPCQHKSEKQRDICRSVKYMMLHVRDCPGTTSTFDVCPFPWCRKVKHLLYHLVACAE 368          
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Match: A0A448ZEC8_9STRA (TAZ-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEC8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.370e-21
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 3
Query:    3 PTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPE 233
            P L  + A+KLL+LM HA  CP  H+  +  +VCRSVK++MLH+RDC G T   D CP PWC     LL+HL+ C E
Sbjct:  947 PVLSDEHASKLLILMGHAATCPCQHKLEKHRDVCRSVKYMMLHVRDCPGTTSTFDVCPFPWCRKVKHLLYHLVSCKE 1023          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16128.4189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LKM8_ECTSI7.380e-5198.72TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KT72_9PHAE3.670e-49100.00TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S1TU47_9STRA3.940e-2957.53Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2C9V7_9STRA5.430e-2863.77Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7R9YGR4_9STRA2.390e-2757.89Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5KVY2_9PHAE1.330e-2662.67TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2KXT5_9STRA1.100e-2257.33Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
W7U3G5_9STRA5.150e-2256.94TAZ-type domain-containing protein n=3 Tax=Monodop... [more]
A0A7S4AF96_9STRA6.280e-2149.35Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZEC8_9STRA6.370e-2150.65TAZ-type domain-containing protein n=1 Tax=Pseudo-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16128contigE-fasciculatus_F_contig16128:1022..1703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size237
Cds size123
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16128.4189.1prot_E-fasciculatus_F_contig16128.4189.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16128 1022..1590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928079.1496944-CDS-E-fasciculatus_F_contig16128:1021..11191622928079.1496944-CDS-E-fasciculatus_F_contig16128:1021..1119Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16128 1022..1119 +
1695995815.0229368-CDS-E-fasciculatus_F_contig16128:1021..11191695995815.0229368-CDS-E-fasciculatus_F_contig16128:1021..1119Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16128 1022..1119 +
1622928079.1658466-CDS-E-fasciculatus_F_contig16128:1565..15901622928079.1658466-CDS-E-fasciculatus_F_contig16128:1565..1590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16128 1566..1590 +
1695995815.0481284-CDS-E-fasciculatus_F_contig16128:1565..15901695995815.0481284-CDS-E-fasciculatus_F_contig16128:1565..1590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16128 1566..1590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928079.1870692-UTR-E-fasciculatus_F_contig16128:1590..17031622928079.1870692-UTR-E-fasciculatus_F_contig16128:1590..1703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16128 1591..1703 +
1695995815.0608516-UTR-E-fasciculatus_F_contig16128:1590..17031695995815.0608516-UTR-E-fasciculatus_F_contig16128:1590..1703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16128 1591..1703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16128.4189.1

>prot_E-fasciculatus_F_contig16128.4189.1 ID=prot_E-fasciculatus_F_contig16128.4189.1|Name=mRNA_E-fasciculatus_F_contig16128.4189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=41bp
DLPWTRIRPRSCWCLCATPGTARGITAPLGSQRCAEASSF*
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mRNA from alignment at E-fasciculatus_F_contig16128:1022..1703+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16128.4189.1 ID=mRNA_E-fasciculatus_F_contig16128.4189.1|Name=mRNA_E-fasciculatus_F_contig16128.4189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=682bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16128:1022..1703+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACCTACCCTGGACTCGGATCAGGCCGCGAAGCTGCTGGTGCTTATGTGC CACGCCCGGCACTGCCCGGGGAATCACCGCTCCGCTAGGCTCGCAGAGGT ACAGCAGTGTGCGCAGAGCGACATGCCGGGTTTTCGCCGACCCAGGCTTT AAACGTTTCACAAGGATGAACCAGAAGCTGGTCGTCATGCTTGCGTTTTT TTTTTTTTTTCGCAAGATTGGGGTGAGTATATTCTTCTTCTTTATAGTTA CAAGGTATGGCGTTAGCAGCGTGGGATCTCATCACCTACTGCAGTGGGTG TAGGATAGTGGTTTTCACCAACAGTTTGCTGTTTGCCAGAGCGTCCGGTG TTCGTGAAAGCCAAACCTGCGACCACCCTAGTTTTCCCTCTTTGCCTAAC TCGTTCCTCGCTCTGCATGTGTGCTATTTTTTTGCTACGCACGAGCATGC GGTATTTTCTTTTTTCTTCATTTCTTTTTTGTTTTGCCTATCTCTGGCGT TTTTGTGTTTTTTTGTTTTATTTTCTCGTTGGGTGCATGCACAGGTGTGC CGAAGCGTCAAGTTTCTGATGCTGCACTTGCGAGACTGCGACGGGAAGAC AAGGAATGGAGACCCCTGTCCGATGCCGTGGTGCGAGCCTTGCACGTCTC TCCTGCATCACCTCATCCAGTGCCCGGAGTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16128:1022..1703+

>mRNA_E-fasciculatus_F_contig16128.4189.1 ID=mRNA_E-fasciculatus_F_contig16128.4189.1|Name=mRNA_E-fasciculatus_F_contig16128.4189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=246bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16128:1022..1703+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACCTACCCTGGACTCGGATCAGGCCGCGAAGCTGCTGGTGCTTATGTGC
CACGCCCGGCACTGCCCGGGGAATCACCGCTCCGCTAGGCTCGCAGAGGA
CCTACCCTGGACTCGGATCAGGCCGCGAAGCTGCTGGTGCTTATGTGCCA
CGCCCGGCACTGCCCGGGGAATCACCGCTCCGCTAGGCTCGCAGAGGTGT
GCCGAAGCGTCAAGTTTCTGAGTGTGCCGAAGCGTCAAGTTTCTGA
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