mRNA_E-fasciculatus_F_contig16114.4184.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16114.4184.1
Unique NamemRNA_E-fasciculatus_F_contig16114.4184.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16114.4184.1 vs. uniprot
Match: D7G304_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G304_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 2.350e-74
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 1 
Query:    1 QRTNQQNDGPVMDLASRQGSMRRVRKAADEQFVRVQRAYRVLCDPTKRLVYDEYGLEGLEAFEQSEIGKKSVGMPQKRPAEVRRLLDSLLREAAQKRQDVALATFGGMTAECVCLPIVDVSGRLVTRNLLPE 396
            Q+   QNDGPV+DLASRQGSMRRVR+AADEQFVRVQRAYRVLCDPTKRLVYDEYGLEGLEAFE+SEIGKKSVGMPQKRPAEVRRLLDSLLREAAQKRQDVALATFGGMTAECVCLPIVDVSGRLV RNLLPE
Sbjct:   47 QQQQDQNDGPVLDLASRQGSMRRVRRAADEQFVRVQRAYRVLCDPTKRLVYDEYGLEGLEAFERSEIGKKSVGMPQKRPAEVRRLLDSLLREAAQKRQDVALATFGGMTAECVCLPIVDVSGRLVKRNLLPE 178
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BLAST of mRNA_E-fasciculatus_F_contig16114.4184.1 vs. uniprot
Match: A0A6H5L2F9_9PHAE (DUF3395 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2F9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.320e-16
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:  268 LREAAQKRQDVALATFGGMTAECVCLPIVDVSGRLVTRNLLPE 396
            +REAAQKRQDVALATFGGMTAECVCLPIVD SG+LV RNLLPE
Sbjct:    1 MREAAQKRQDVALATFGGMTAECVCLPIVDASGKLVKRNLLPE 43
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BLAST of mRNA_E-fasciculatus_F_contig16114.4184.1 vs. uniprot
Match: W2ZUV0_PHYPR (J domain-containing protein n=22 Tax=Phytophthora TaxID=4783 RepID=W2ZUV0_PHYPR)

HSP 1 Score: 56.2 bits (134), Expect = 1.430e-6
Identity = 29/84 (34.52%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   79 AADEQFVRVQRAYRVLCDPTKRLVYDEYGLEGLEAFEQSEIGKKSV-GMPQKRPAEVRRLLDSLLREAAQKRQDVALATFGGMT 327
            AA+ Q+  + RAY+VLCDP KR VYD YG +G+ A E   + ++ V G   +   EV+R ++ ++R   Q+  +   +++  M+
Sbjct:   57 AANSQYAVLDRAYKVLCDPVKRRVYDIYGEQGVHALEHDGVAQQQVVGAHLETSDEVQRYVEKIMRRMNQQALEAQFSSYSEMS 140
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BLAST of mRNA_E-fasciculatus_F_contig16114.4184.1 vs. uniprot
Match: A0A1Y1UL01_9TREE (J domain-containing protein n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1UL01_9TREE)

HSP 1 Score: 53.9 bits (128), Expect = 9.290e-6
Identity = 37/96 (38.54%), Postives = 48/96 (50.00%), Query Frame = 1 
Query:   73 RKAADEQFVRVQRAYRVLCDPTKRLVYDEYGLEGLEAFEQSEIGKKSVGMPQKRPAEVRRLLDSLLREAAQKRQDVALATFGGMT----AECVCLP 348
            R+AA  +F  +QRAY VL DPTKR++YD +G EGL            VG   K PAE+R+  +       Q   D  + + G MT    A  V LP
Sbjct:   84 RRAAHGRFQEIQRAYEVLTDPTKRMIYDMFGEEGLRT-------SWEVGHRVKTPAELRKHFEKQSNAKRQLEIDALVKSRGDMTVVFDARAVFLP 172
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BLAST of mRNA_E-fasciculatus_F_contig16114.4184.1 vs. uniprot
Match: A0A8K1FHR5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHR5_PYTOL)

HSP 1 Score: 52.4 bits (124), Expect = 3.200e-5
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   82 ADEQFVRVQRAYRVLCDPTKRLVYDEYGLEGLEAFEQSEIGKKS--VGMPQKRPAEVRRLLDSLLREAAQKRQDVALATFGGM 324
            A+ Q+  + RAY+VL DPTKR VYD YG  G+ A +QSE+  K+  +G   +   E+++ ++ +LR   Q+  +   ++F  M
Sbjct:   60 ANTQYPILDRAYKVLSDPTKRHVYDIYGERGVAALDQSELAGKTTTLGAHLQSSDEMQQQVEKMLRRMNQQALEAQFSSFSEM 142
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BLAST of mRNA_E-fasciculatus_F_contig16114.4184.1 vs. uniprot
Match: K3W6H1_GLOUD (J domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6H1_GLOUD)

HSP 1 Score: 52.0 bits (123), Expect = 4.380e-5
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:   82 ADEQFVRVQRAYRVLCDPTKRLVYDEYGLEGLEAFEQSEIGKKSVGMPQKRPAEVRRLLDSLLR 273
            A+ Q+  + RAY+VLCDP KR VY+ YG  G++A EQ       VG   K P EVR +  S+ R
Sbjct:   70 ANTQYPILDRAYKVLCDPVKRRVYNLYGERGVQALEQDAALHNVVGAYLKSPEEVRNIALSMQR 133
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BLAST of mRNA_E-fasciculatus_F_contig16114.4184.1 vs. uniprot
Match: A0A8H7QS61_9FUNG (U6 snRNA phosphodiesterase 1 n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QS61_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 4.500e-5
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   73 RKAADEQFVRVQRAYRVLCDPTKRLVYDEYGLEGLEAFEQSEIGKKSVGMPQKRPAEVRRLLDSLLREAAQKRQDV 300
            +K A+ +F  +Q+AY VLCDP KR++YD YG EGL A          +G   K P E+R   + + R+  ++ QD+
Sbjct:  287 KKMAESRFQVIQQAYEVLCDPAKRVIYDTYGEEGLNA-------SWDIGPRYKTPEELRNEYEKMARQ--KREQDL 353
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16114.4184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G304_ECTSI2.350e-7493.94Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A6H5L2F9_9PHAE7.320e-1690.70DUF3395 domain-containing protein n=1 Tax=Ectocarp... [more]
W2ZUV0_PHYPR1.430e-634.52J domain-containing protein n=22 Tax=Phytophthora ... [more]
A0A1Y1UL01_9TREE9.290e-638.54J domain-containing protein n=1 Tax=Kockovaella im... [more]
A0A8K1FHR5_PYTOL3.200e-536.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3W6H1_GLOUD4.380e-545.31J domain-containing protein n=1 Tax=Globisporangiu... [more]
A0A8H7QS61_9FUNG4.500e-538.16U6 snRNA phosphodiesterase 1 n=1 Tax=Mucor saturni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16114contigE-fasciculatus_F_contig16114:185..2197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size399
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16114.4184.1prot_E-fasciculatus_F_contig16114.4184.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16114 207..2123 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928078.42493-UTR-E-fasciculatus_F_contig16114:184..2061622928078.42493-UTR-E-fasciculatus_F_contig16114:184..206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16114 185..206 +
1695995814.632485-UTR-E-fasciculatus_F_contig16114:184..2061695995814.632485-UTR-E-fasciculatus_F_contig16114:184..206Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16114 185..206 +
1622928078.516969-UTR-E-fasciculatus_F_contig16114:2123..21971622928078.516969-UTR-E-fasciculatus_F_contig16114:2123..2197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16114 2124..2197 +
1695995814.6725688-UTR-E-fasciculatus_F_contig16114:2123..21971695995814.6725688-UTR-E-fasciculatus_F_contig16114:2123..2197Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16114 2124..2197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928078.43779-CDS-E-fasciculatus_F_contig16114:206..3311622928078.43779-CDS-E-fasciculatus_F_contig16114:206..331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16114 207..331 +
1695995814.6422777-CDS-E-fasciculatus_F_contig16114:206..3311695995814.6422777-CDS-E-fasciculatus_F_contig16114:206..331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16114 207..331 +
1622928078.4712515-CDS-E-fasciculatus_F_contig16114:1020..11161622928078.4712515-CDS-E-fasciculatus_F_contig16114:1020..1116Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16114 1021..1116 +
1695995814.652541-CDS-E-fasciculatus_F_contig16114:1020..11161695995814.652541-CDS-E-fasciculatus_F_contig16114:1020..1116Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16114 1021..1116 +
1622928078.4935665-CDS-E-fasciculatus_F_contig16114:2041..21231622928078.4935665-CDS-E-fasciculatus_F_contig16114:2041..2123Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16114 2042..2123 +
1695995814.6623018-CDS-E-fasciculatus_F_contig16114:2041..21231695995814.6623018-CDS-E-fasciculatus_F_contig16114:2041..2123Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16114 2042..2123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16114.4184.1

>prot_E-fasciculatus_F_contig16114.4184.1 ID=prot_E-fasciculatus_F_contig16114.4184.1|Name=mRNA_E-fasciculatus_F_contig16114.4184.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MAPSWTWPAGRVRCGGLGRPPTSSSSGCSGPTGCCATRPRGWCTTSTASR
VWKRSSRARSARRAWACRRSVPQRSDVCSTASCARPPRRDRTSPWRPSEA
*
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mRNA from alignment at E-fasciculatus_F_contig16114:185..2197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16114.4184.1 ID=mRNA_E-fasciculatus_F_contig16114.4184.1|Name=mRNA_E-fasciculatus_F_contig16114.4184.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2013bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16114:185..2197+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACGAACGAACCAGCAGAACGATGGCCCCGTCATGGACCTGGCCAGCCG
GCAGGGTTCGATGCGGCGGGTTAGGAAGGCCGCCGACGAGCAGTTCGTCA
GGGTGCAGCGGGCCTACCGGGTGCTGTGCGACCCGACCAAGAGGCTGGTG
GGTGTGTCGTGTCCCTTGTTGCCGTGGACCGGGCTTGCACAGGGTACTGC
CGTAGGTCGGTTGTGCTCGGAGCAGGATGCATACTGCTGTGCACGGGCAA
GCGTCTTTTCTCCGATGGTTTGTTGTGTTGTCACTGCAACATGTGTCCCT
TGCGCCATCCTCTCGAGGACGTGTGGTCAATGGTCAAGCTGCTAACACAT
GCGAAGCATGAGTACGCCCCCCCCCCGTCCTCAACCCTCGTTGTGGTTGT
TGTTGCTGGTGGTGCTTGCATGCTTGCAGCGGTTGGTGGTGTTACCGCAG
TTGCTGTTGGTGCCTGCAGCAGTTGCTGCAGTTGCTGTTTCTTTTGCAGC
AGTTGTTGCTGCTGCTGTAGTTTTCCCGCCACTCGCGGCTCGGTTTTCGT
CTTTTCCTGCTATTATTCGGGTATTATACCGTGTACACAAGAAAACACCC
CGGTGATATCTAACGTTTGAGTTCTGAAAAGCTGCAATCGCCGTGTGGGT
GGTACCTACTGGTATCTTGCGTTTGTGGCCCTCTGAGAGCAGTACTATTT
TGGGGTGACTAATTTTTGACCTGTAGAGATACTACTACCGCGTGTGGTAT
TGTATGGGGAGGGGGTGTTATCTTGTGTCGTCTGTGGTACATACCCCGAC
CACGTGCATGCCGGCCGGATGCCTGCCTGTCGTCAGGTGTACGACGAGTA
CGGCCTCGAGGGTCTGGAAGCGTTCGAGCAGAGCGAGATCGGCAAGAAGA
GCGTGGGCATGCCGCAGAAGCGTCCCGCAGAGGTAACTCTGAGCTGCTGC
TCCTGCGGCCGTTGCGGCTGTCGTGGTGCAACTGGTCTACAATGGCTTGG
GTTTTTCGCTGGTCTTGGAGGGGTCACGACACTACTACTCTGTTGCCACC
TGCCACCTATGCTGGTTAGCGGCTCAGTCCTTCGGCGTGCTCACGTACTT
ACGCCGTAGCCCCCCCTCTCGTGCTGTCAGGCGTCCCGACCGACGACCAG
GCCGTACTTGCCCTCCCCCAAAAGTGTCGAGAAGGGGGGTGCTGTAGGCG
AGATGTATCCTGCGTGACCCCCGATTCCCAGCAACGATGATTTTTTCAAT
TATTGTGCTTACACACAAGAACGACCGTCAGTTTGTTCCGTCTACGACAA
CAGAGTCAGCTGTTTTTTCGGCAAAGTAGGGTGGTGGGTACACCGTGGTC
TTGAAAAGATGACCAGCACGTAGACGGCTCCCTCTCTACAGCAGTAGGCT
CTTGAGTTTCATGCGAACCACCTTCGGATCTTGAGTGTTGACAGTGTTGA
CGTACAAAAGCTCAACCTGCACTCTTGTGTGGCGACGATCTCTCACATAA
TTTTCTCTACGATGCCTCTTCGATGTCTGTTCGATGTCGGTGTAGCTCCA
TTTTTTATCTCTGTTGTGTGGCCTGTGTGACCCAGGCTGGTGCGTCCAGA
AATTGTCCCGAAAAAGGTGCGAGGACCGGCGTCCAGCAGTAGTGAATGGG
ATGACAAAAAAAGCTTCGACATGTAGCTCCCTTTTGTTTTCCCTCTCCCC
TCGTTTGTGTGGTCTTCGTCCTGTTTGACCCATGGCTGGTGCGTACAGAA
ATAGTAGAATGCCGGAAGATGTAAGGCCGGCCGTCTAGAATTAGTGAATG
GCATGACAACAAAAAAGAATGATCGTACCGGTCTCGATCTCGATGTGTGC
GGTTCAGGTCCGACGTCTGCTCGACAGCCTCCTGCGCGAGGCCGCCCAGA
AGAGACAGGACGTCGCCCTGGCGACCTTCGGAGGCATGACAGCGGAGTGC
GTTTGTCTTCCCATCGTGGACGTGAGCGGAAGGCTAGTCACGCGAAACCT
CTTGCCGGAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16114:185..2197+

>mRNA_E-fasciculatus_F_contig16114.4184.1 ID=mRNA_E-fasciculatus_F_contig16114.4184.1|Name=mRNA_E-fasciculatus_F_contig16114.4184.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16114:185..2197+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCCCGTCATGGACCTGGCCAGCCGGCAGGGTTCGATGCGGCGGGTT
AGGAAGGCCGCCGACGAGCAGTTCGTCAGGGTGCAGCGGGCCTACCGGGT
GCTGTGCGACCCGACCAAGAGGCTGATGGCCCCGTCATGGACCTGGCCAG
CCGGCAGGGTTCGATGCGGCGGGTTAGGAAGGCCGCCGACGAGCAGTTCG
TCAGGGTGCAGCGGGCCTACCGGGTGCTGTGCGACCCGACCAAGAGGCTG
GTGTACGACGAGTACGGCCTCGAGGGTCTGGAAGCGTTCGAGCAGAGCGA
GATCGGCAAGAAGAGCGTGGGCATGCCGCAGAAGCGTCCCGCAGAGGTGT
ACGACGAGTACGGCCTCGAGGGTCTGGAAGCGTTCGAGCAGAGCGAGATC
GGCAAGAAGAGCGTGGGCATGCCGCAGAAGCGTCCCGCAGAGGTCCGACG
TCTGCTCGACAGCCTCCTGCGCGAGGCCGCCCAGAAGAGACAGGACGTCG
CCCTGGCGACCTTCGGAGGCATGAGTCCGACGTCTGCTCGACAGCCTCCT
GCGCGAGGCCGCCCAGAAGAGACAGGACGTCGCCCTGGCGACCTTCGGAG
GCATGA
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