mRNA_E-fasciculatus_F_contig1611.4181.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1611.4181.1 vs. uniprot
Match: D8LSY1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY1_ECTSI) HSP 1 Score: 417 bits (1071), Expect = 1.680e-143 Identity = 220/260 (84.62%), Postives = 225/260 (86.54%), Query Frame = 1
Query: 1 MDDGGRMFDWEDEALEERCLDLQDKEQRYVGPLVALADTLTNLSRLKVLDLSSCTLIGLTGNRYHGLNALGNAFASGKKLTHLRISGNSLHSEAALIVGSWLSSLPKLRYLDLSSRSGFDPLCGAFRTSLHLRTLLLRDVGMDDGEAEAVASFLALSVRLEKLDLSENQLHVRGARCLAGALRSNGSLSSXXXXXXXXXXXXXXXXXASVPHAASLIELDVSSNGLTGGNSGGGSSGYIKKSVKEGFIEAALASYSIETF 780
MDD GRMFDWEDEALEERCLD+QDKEQRYVGPLVALADTLT+LSRLKVLDLS+CTLIGL GNRYHGLNALGN FASGKKLTHLRISGNSLHSEAALIVG WL SLPKLRYLDLSSRSGFD LCGAFRTSLHLRTLLLRDVGMDDGEAE VASFLALS RLEKLDLS+NQLHVRGAR LAGALRSNGSLSS ASVPHAASL+ELDVSSNGLTGG Y KKSVKEGFIEAALASYSIETF
Sbjct: 1 MDDVGRMFDWEDEALEERCLDIQDKEQRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLAGNRYHGLNALGNTFASGKKLTHLRISGNSLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDSLCGAFRTSLHLRTLLLRDVGMDDGEAEGVASFLALSARLEKLDLSDNQLHVRGARYLAGALRSNGSLSSLLLGHNRIGNEGALLLAASVPHAASLVELDVSSNGLTGGXXXXXXXXYTKKSVKEGFIEAALASYSIETF 260
BLAST of mRNA_E-fasciculatus_F_contig1611.4181.1 vs. uniprot
Match: A0A6H5LDS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDS7_9PHAE) HSP 1 Score: 282 bits (721), Expect = 4.010e-91 Identity = 159/240 (66.25%), Postives = 163/240 (67.92%), Query Frame = 1
Query: 1 MDDGGRMFDWEDEALEERCLDLQDK------------------------------------------------------------------EQRYVGPLVALADTLTNLSRLKVLDLSSCTLIGLTGNRYHGLNALGNAFASGKKLTHLRISGNSLHSEAALIVGSWLSSLPKLRYLDLSSRSGFDPLCGAFRTSLHLRTLLLRDVGMDDGEAEAVASFLALSVRLEKLDLSENQLHVRG 522
MDD GRMFDWEDEALEERCLDLQDK EQRYVGPLVALADTLT+LSRLKVLDLS+CTLIGL+GNRYHGLNALGN ASGKKLTHLRISGN LHSEAALIVG WL SLPKLRYLDLSSRSGFDPLCGAFRTSLHLRTLLLRDVGMDD EAE VASFLALSVRLEKLDLSENQ + G
Sbjct: 1 MDDVGRMFDWEDEALEERCLDLQDKNISTSDIGAFLQSLDGLHDVSSLKVVNLAGNRVGSKRESMVPIDTLLTASARSLTALNFCGNPLGEEQRYVGPLVALADTLTSLSRLKVLDLSNCTLIGLSGNRYHGLNALGNTLASGKKLTHLRISGNRLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDPLCGAFRTSLHLRTLLLRDVGMDDLEAEGVASFLALSVRLEKLDLSENQERLSG 240
BLAST of mRNA_E-fasciculatus_F_contig1611.4181.1 vs. uniprot
Match: UPI0015D00DBA (leucine-rich repeat-containing protein 31 isoform X1 n=2 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015D00DBA) HSP 1 Score: 64.7 bits (156), Expect = 3.250e-8 Identity = 65/202 (32.18%), Postives = 87/202 (43.07%), Query Frame = 1
Query: 97 LVALADTLTNLSRLKVLDLSSCTLIGLTGNRYHGLNALGNAFASGKKLTHLRISGNSLHSEAALIVGSWLSSLPKLRYLDLSSRSG-----FDPLCGAFRTSLHLRTLLLRDVGMDDGEAEAVASFLALSVRLEKLDLSENQLHVRGARCLAGALRSNGSLSSXXXXXXXXXXXXXXXXXASVPHAASLIELDVSSNGLTGG 687
LV L L L++L+V+DLS L+G L L KL L++SG L ++ +G L S+P L LDLS +G L F ++ LR L L D + + +A +V L L LE LDLS NQL VRG +A L S L S + +L LD+S N GG
Sbjct: 139 LVELGTLLPFLAQLEVMDLSWNDLLG------GSLQVLAVHLQHVGKLKTLKMSGCRLTAQDLSALGEALDSVPMLEILDLSWNAGAGGGNLHYLTSHFSSASALRELHLVDCQLSEADAMSVGELLLLLPCLEVLDLSSNQLVVRGMEDVASCLGSTPHLRSLKLRMCRLDHGSLTVLGEKLKLNPALEHLDLSCNKECGG 334
BLAST of mRNA_E-fasciculatus_F_contig1611.4181.1 vs. uniprot
Match: A0A5C6ME89_9TELE (NLR family CARD domain-containing protein 3 CARD15-like protein (Fragment) n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6ME89_9TELE) HSP 1 Score: 57.8 bits (138), Expect = 7.720e-6 Identity = 58/150 (38.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query: 121 TNLSRLKVLDLSSCTLIGLTGNRYHGLNALGNAFASGK-KLTHLRISGNSLHSEAALIVGSWLSSLPK-LRYLDLSSRSGFDP----LCGAFR-TSLHLRTLLLRDVGMDDGEAEAVASFLALSV-RLEKLDLSENQLHVRGARCLAGAL 546
+NLS L+VLDLSS TL + G+ L + S KL LR+ G SL + + S L S P LR LDLS DP LCG + L TL LRD + + ++AS L + L +LDLS+NQL G + L G L
Sbjct: 858 SNLSHLRVLDLSSNTL------QDSGVKRLCSGLESPNCKLERLRLIGCSLSEISCGSLASALRSNPSHLRELDLSENELQDPGVKLLCGFLHFPNCRLETLGLRDCSLSEISCGSLASALRSNPSHLRELDLSQNQLKDPGVKLLCGFL 1001 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1611.4181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1611.4181.1 >prot_E-fasciculatus_F_contig1611.4181.1 ID=prot_E-fasciculatus_F_contig1611.4181.1|Name=mRNA_E-fasciculatus_F_contig1611.4181.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=262bp MDDGGRMFDWEDEALEERCLDLQDKEQRYVGPLVALADTLTNLSRLKVLDback to top mRNA from alignment at E-fasciculatus_F_contig1611:10906..14471- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1611.4181.1 ID=mRNA_E-fasciculatus_F_contig1611.4181.1|Name=mRNA_E-fasciculatus_F_contig1611.4181.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3566bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1611:10906..14471- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1611:10906..14471- >mRNA_E-fasciculatus_F_contig1611.4181.1 ID=mRNA_E-fasciculatus_F_contig1611.4181.1|Name=mRNA_E-fasciculatus_F_contig1611.4181.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1572bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1611:10906..14471- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |