mRNA_E-fasciculatus_F_contig16107.4178.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16107.4178.1
Unique NamemRNA_E-fasciculatus_F_contig16107.4178.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16107.4178.1 vs. uniprot
Match: A0A6H5JQ09_9PHAE (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ09_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.140e-33
Identity = 62/75 (82.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 MQDDIASFRPTPEHLDYPGMLLRAAKGGSAGDGLVNARTGAGDRASPPSS-SSGKGIAPAYTTWYPPLRSTLQVL 222
            +QDDIASFRPTPE LDYPGMLLRAA+GG   DGLVNARTGAGD+ SP S  SS KG APAYTTWYPPLRSTLQVL
Sbjct:    6 IQDDIASFRPTPEDLDYPGMLLRAARGGGTSDGLVNARTGAGDQPSPSSPPSSTKGSAPAYTTWYPPLRSTLQVL 80
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BLAST of mRNA_E-fasciculatus_F_contig16107.4178.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.930e-30
Identity = 63/75 (84.00%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 MQDDIASFRPTPEHLDYPGMLLRAAKGGSAGDGLVNARTGAGDRASPPSS-SSGKGIAPAYTTWYPPLRSTLQVL 222
            +QDDIASFRPTPE LDYPGMLLRAAKGG  GD LVNARTG GD+ SP S  SSGKG APAYTTWYPPLRSTLQVL
Sbjct:  599 IQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVL 673
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16107.4178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ09_9PHAE5.140e-3382.67Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
D7G064_ECTSI3.930e-3084.00Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16107contigE-fasciculatus_F_contig16107:563..793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.1e-25
Seed eggNOG ortholog2880.D7G064
Preferred nameCOG3
KEGG koko:K20290
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006403,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008565,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030334,GO:0031090,GO:0031647,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033206,GO:0033227,GO:0033365,GO:0034613,GO:0034645,GO:0035262,GO:0036211,GO:0040012,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050821,GO:0051179,GO:0051234,GO:0051236,GO:0051270,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046,GO:2000145
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2604@1,KOG2604@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928077.5562313-CDS-E-fasciculatus_F_contig16107:562..7931622928077.5562313-CDS-E-fasciculatus_F_contig16107:562..793Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16107 563..793 +
1695995814.3125374-CDS-E-fasciculatus_F_contig16107:562..7931695995814.3125374-CDS-E-fasciculatus_F_contig16107:562..793Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16107 563..793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16107.4178.1prot_E-fasciculatus_F_contig16107.4178.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16107 563..793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16107.4178.1

>prot_E-fasciculatus_F_contig16107.4178.1 ID=prot_E-fasciculatus_F_contig16107.4178.1|Name=mRNA_E-fasciculatus_F_contig16107.4178.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp
MQDDIASFRPTPEHLDYPGMLLRAAKGGSAGDGLVNARTGAGDRASPPSS
SSGKGIAPAYTTWYPPLRSTLQVLLML
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mRNA from alignment at E-fasciculatus_F_contig16107:563..793+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16107.4178.1 ID=mRNA_E-fasciculatus_F_contig16107.4178.1|Name=mRNA_E-fasciculatus_F_contig16107.4178.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=231bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16107:563..793+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGACGATATCGCAAGCTTCCGGCCCACGCCCGAACACCTCGACTA
CCCCGGCATGCTCCTCCGAGCCGCGAAGGGCGGTAGCGCCGGCGACGGCT
TAGTCAACGCTAGGACGGGGGCGGGGGACCGGGCGTCGCCTCCTTCTTCC
TCTTCTGGGAAGGGGATCGCGCCGGCGTACACGACGTGGTACCCGCCGCT
GCGATCGACGCTGCAGGTGCTGCTGATGCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16107:563..793+

>mRNA_E-fasciculatus_F_contig16107.4178.1 ID=mRNA_E-fasciculatus_F_contig16107.4178.1|Name=mRNA_E-fasciculatus_F_contig16107.4178.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16107:563..793+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGACGATATCGCAAGCTTCCGGCCCACGCCCGAACACCTCGACTA
CCCCGGCATGCTCCTCCGAGCCGCGAAGGGCGGTAGCGCCGGCGACGGCT
TAGTCAACGCTAGGACGGGGGCGGGGGACCGGGCGTCGCCTCCTTCTTCC
TCTTCTGGGAAGGGGATCGCGCCGGCGTACACGACGTGGTACCCGCCGCT
GCGATCGACGCTGCAGGTGCTGCTGATGCTGATGCAGGACGATATCGCAA
GCTTCCGGCCCACGCCCGAACACCTCGACTACCCCGGCATGCTCCTCCGA
GCCGCGAAGGGCGGTAGCGCCGGCGACGGCTTAGTCAACGCTAGGACGGG
GGCGGGGGACCGGGCGTCGCCTCCTTCTTCCTCTTCTGGGAAGGGGATCG
CGCCGGCGTACACGACGTGGTACCCGCCGCTGCGATCGACGCTGCAGGTG
CTGCTGATGCTG
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