mRNA_E-fasciculatus_F_contig16106.4177.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16106.4177.1
Unique NamemRNA_E-fasciculatus_F_contig16106.4177.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 5.920e-44
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 2 
Query:    2 EEAKKKDVKKEAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPVMLGNAE 265
            EEAKKKDVKKEAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDP +LGNAE
Sbjct: 3128 EEAKKKDVKKEAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPALLGNAE 3215
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Match: D8LT97_ECTSI (Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.650e-43
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 2 
Query:    2 EEAKKKDVKKEAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPVMLGNAE 265
            +EAKKKDVKKEAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPT EEEKTLLNYNGDP +LGNAE
Sbjct: 2256 DEAKKKDVKKEAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTTEEEKTLLNYNGDPALLGNAE 2343
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BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Match: A0A7R9YER3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YER3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.810e-14
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 2 
Query:   14 KKDVKKEAPKE-ISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPVMLGNAE 265
            KK  KK A KE ++L+DG+RA N  IAIARIK+TYA+ R+ + N++++  S+  +++LQ F+PT +E + L  Y GD  +L  AE
Sbjct:   11 KKAAKKSARKEKVALIDGRRATNAGIAIARIKLTYAQMREKITNLEDSSFSTVQMRTLQTFLPTPDEIQKLKGYKGDKKLLNEAE 95
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BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Match: A0A397AKS8_9STRA (FH2 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AKS8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.020e-13
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   47 ISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPVMLGNAE 265
            ++L+DGKRAMN +IA+ARIK++YA+  +A+   D   L+   L ++ EF+PT EE + +  Y GDP +LG AE
Sbjct:  560 VTLVDGKRAMNAAIALARIKLSYADVAKAIDTFDAMGLTLEELTTINEFLPTSEEVRVVQRYTGDPAVLGEAE 632
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Match: A0A397B2R3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B2R3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.230e-13
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   47 ISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPVMLGNAE 265
            ++L+DGKRAMN +IA+ARIK++YA+  +A+   D   L+   L ++ EF+PT EE + +  Y GDP +LG AE
Sbjct: 1125 VTLVDGKRAMNAAIALARIKLSYADVAKAIDTFDAMGLTLEQLTTINEFLPTSEEVRVVQRYTGDPAVLGEAE 1197
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Match: W4FR71_9STRA (Uncharacterized protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR71_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.250e-13
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   47 ISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPVMLGNAE 265
            ++L+DGKRAMN +IA+ARIK++YA+  +A+   D   L+   L ++ EF+PT EE + +  Y GDP +LG AE
Sbjct: 1248 VTLVDGKRAMNAAIALARIKLSYADVAKAIDTFDAMGLTLEQLTTINEFLPTSEEVRVVQRYTGDPAVLGEAE 1320
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BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Match: A0A836C9A0_9STRA (FH2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9A0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.680e-12
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 2 
Query:   47 ISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYN---GDPVMLGNAE 265
            I+LLDGKR MN +IAIAR+KM YAE R+ V+ + E  L+   L  L EFMPT+EEE TL  Y     D   LG AE
Sbjct:  522 IALLDGKRGMNCAIAIARVKMAYAEIREVVLTLREGALTEEQLTQLLEFMPTEEEEGTLRGYKDSGADVEALGEAE 597
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BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Match: F0W7K9_9STRA (Forminhomology 2 domaincontaining protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7K9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.190e-12
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 2 
Query:   38 PKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPVMLGNAE 265
            P+++ LLD KR  N +IAIARIKM+  + + A++N+D T+++S  L  L +  PT EE+  L NYNGD  +LG  E
Sbjct:  590 PQQVLLLDPKRQQNVAIAIARIKMSPTDIKNAILNIDTTLINSETLNVLIQIAPTLEEQDLLKNYNGDQALLGTQE 665
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Match: A0A024TS83_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TS83_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.990e-12
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   47 ISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPVMLGNAE 265
            ++L+DGKRAMN +IA+ARIK +YA+  +A++  D   L+   L ++ EF+PT EE   +  Y+GDP +LG AE
Sbjct: 1109 VTLVDGKRAMNAAIALARIKQSYADLAKAILTYDAMGLTLEQLTTIHEFLPTDEEVGIVQRYSGDPSVLGEAE 1181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Match: A0A485KBM7_9STRA (Aste57867_4360 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBM7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.010e-12
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 2 
Query:   47 ISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQEFMPTKEEEKTLLNYNGDPVMLGNAE 265
            ++L+DGKRAMN +IA+ARIK++Y E   A+ + D   L+   L ++ EF+PT EE   +  Y GDP +LG AE
Sbjct: 1252 VTLVDGKRAMNAAIALARIKLSYEEVASAIYSYDAKGLTLEQLTTINEFLPTDEEVGVVQRYTGDPAVLGEAE 1324
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16106.4177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR06_9PHAE5.920e-4497.73FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LT97_ECTSI9.650e-4395.45Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7R9YER3_9STRA4.810e-1445.88Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A397AKS8_9STRA9.020e-1346.58FH2 domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A397B2R3_9STRA9.230e-1346.58Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FR71_9STRA9.250e-1346.58Uncharacterized protein n=12 Tax=Aphanomyces astac... [more]
A0A836C9A0_9STRA1.680e-1253.95FH2 domain-containing protein (Fragment) n=1 Tax=T... [more]
F0W7K9_9STRA3.190e-1246.05Forminhomology 2 domaincontaining protein putative... [more]
A0A024TS83_9STRA5.990e-1246.58Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A485KBM7_9STRA6.010e-1246.58Aste57867_4360 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16106contigE-fasciculatus_F_contig16106:1765..2339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928077.4657109-CDS-E-fasciculatus_F_contig16106:1764..19511622928077.4657109-CDS-E-fasciculatus_F_contig16106:1764..1951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16106 1765..1951 +
1695995814.2917829-CDS-E-fasciculatus_F_contig16106:1764..19511695995814.2917829-CDS-E-fasciculatus_F_contig16106:1764..1951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16106 1765..1951 +
1622928077.4787805-CDS-E-fasciculatus_F_contig16106:2258..23381622928077.4787805-CDS-E-fasciculatus_F_contig16106:2258..2338Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16106 2259..2338 +
1695995814.3022773-CDS-E-fasciculatus_F_contig16106:2258..23381695995814.3022773-CDS-E-fasciculatus_F_contig16106:2258..2338Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16106 2259..2338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16106.4177.1prot_E-fasciculatus_F_contig16106.4177.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16106 1765..2338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16106.4177.1

>prot_E-fasciculatus_F_contig16106.4177.1 ID=prot_E-fasciculatus_F_contig16106.4177.1|Name=mRNA_E-fasciculatus_F_contig16106.4177.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
GGGEKERREEGGAQGDQSAGREARDEHVHRNRPHQDDLRGDPPGGHEHGR
DRSVFERASVASGIHADERRGENPAELQRRPSHARERGK
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mRNA from alignment at E-fasciculatus_F_contig16106:1765..2339+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16106.4177.1 ID=mRNA_E-fasciculatus_F_contig16106.4177.1|Name=mRNA_E-fasciculatus_F_contig16106.4177.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=575bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16106:1765..2339+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGAGGCGAAAAAGAAAGACGTGAAGAAGGAGGCGCCCAAGGAGATCA
GTCTGCTGGACGGGAAGCGCGCGATGAACACGTCCATCGCAATCGCCCGC
ATCAAGATGACCTACGCGGAGACCCGCCAGGCGGTCATGAACATGGACGA
GACCGTTCTGTCTTCGAACGTGCTTCAGTCGCTTCAGGTACAGTAGTCTT
GGCGGCGTGGTTGTTTGTTTATCTGTCTGTCTTCCCAGGCGTCGGGGGTG
TTCTGATAGTTGGTTGGCTTGGTGGTTTTTTGCGGCGGAATACATGAGCT
GTTGCTACTTTCTCGGCGGAGTAGCCCCCCCCCCCCTGCAAGAATCTATG
TATTTTCTATTCCTCTCTCCCTCCCGCCCTCTTTCCCTCCATCGCTCACT
CCCTCCCTCCCTCCCTCCCTCCGTCCCGCTCTATTCTCTCTCTCTCCACC
TGTCTGTCTGTCTGCCCGCCCACCCTGTATCTGCCCTCTTCCAGGAATTC
ATGCCGACGAAAGAAGAGGAGAAAACCCTGCTGAACTACAACGGCGACCC
AGTCATGCTCGGGAACGCGGAAAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16106:1765..2339+

>mRNA_E-fasciculatus_F_contig16106.4177.1 ID=mRNA_E-fasciculatus_F_contig16106.4177.1|Name=mRNA_E-fasciculatus_F_contig16106.4177.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16106:1765..2339+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGAGGCGAAAAAGAAAGACGTGAAGAAGGAGGCGCCCAAGGAGATCA
GTCTGCTGGACGGGAAGCGCGCGATGAACACGTCCATCGCAATCGCCCGC
ATCAAGATGACCTACGCGGAGACCCGCCAGGCGGTCATGAACATGGACGA
GACCGTTCTGTCTTCGAACGTGCTTCAGTCGCTTCAGGGAGGAGGCGAAA
AAGAAAGACGTGAAGAAGGAGGCGCCCAAGGAGATCAGTCTGCTGGACGG
GAAGCGCGCGATGAACACGTCCATCGCAATCGCCCGCATCAAGATGACCT
ACGCGGAGACCCGCCAGGCGGTCATGAACATGGACGAGACCGTTCTGTCT
TCGAACGTGCTTCAGTCGCTTCAGGAATTCATGCCGACGAAAGAAGAGGA
GAAAACCCTGCTGAACTACAACGGCGACCCAGTCATGCTCGGGAACGCGG
AAAAGAATTCATGCCGACGAAAGAAGAGGAGAAAACCCTGCTGAACTACA
ACGGCGACCCAGTCATGCTCGGGAACGCGGAAAA
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