mRNA_E-fasciculatus_F_contig16105.4176.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16105.4176.1
Unique NamemRNA_E-fasciculatus_F_contig16105.4176.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Match: D8LGB2_ECTSI (Peroxisomal membrane protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB2_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.800e-71
Identity = 112/127 (88.19%), Postives = 113/127 (88.98%), Query Frame = 1
Query:    1 IQKTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKADDDSVKSALVPADAGNIERFAEDAKED 381
            I +TIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQ             IGYNIFLSFLGNKKADDDSVKSALVPADAGNIERFAEDAKED
Sbjct:   90 IDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQ-------------IGYNIFLSFLGNKKADDDSVKSALVPADAGNIERFAEDAKED 203          
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Match: G3G651_9PHAE (Mpv17-like protein (Fragment) n=17 Tax=Fucaceae TaxID=3010 RepID=G3G651_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.960e-50
Identity = 87/119 (73.11%), Postives = 92/119 (77.31%), Query Frame = 1
Query:   25 IFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKADDDSVKSALVPADAGNIERFAEDAKED 381
            IFGVMFFTYLGL EGKS DDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQ             IGYNIFLSFLGN+K ++  VK +L+P     IER AED  ED
Sbjct:    1 IFGVMFFTYLGLTEGKSFDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQ-------------IGYNIFLSFLGNRKTEEPDVKLSLMPET--EIERLAEDIDED 104          
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Match: A0A835Z5E2_9STRA (Peroxisomal membrane protein-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E2_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.540e-47
Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    1 IQKTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKADDDSV 315
            I +TIWNPIFG+MFF+YLGL EGKSVD I +KIK DLATAVMGSWTVWIPAHTINFKFVPTSQRLLYIN+IQ             IGYN+FLSFLGNKKA +D+V
Sbjct:   90 IDQTIWNPIFGIMFFSYLGLTEGKSVDQIYQKIKADLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINSIQ-------------IGYNVFLSFLGNKKAPEDAV 181          
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Match: W7TJ93_9STRA (Mpv17-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJ93_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.070e-43
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    1 IQKTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKADD-DSVKSA 324
            I + +WNP FGVMFF+YLGLAEGKS  DIQ KIKNDLATAV+GSWTVWIPAH INF+FVP++QRLLYIN+IQ             IGYNIFLSFLGNKK DD + +K+A
Sbjct:   93 IDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQ-------------IGYNIFLSFLGNKKVDDTEELKAA 188          
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Match: Q0IHG9_XENLA (MGC154358 protein n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q0IHG9_XENLA)

HSP 1 Score: 149 bits (375), Expect = 5.810e-43
Identity = 73/120 (60.83%), Postives = 85/120 (70.83%), Query Frame = 1
Query:    1 IQKTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKADDDSVKSALVPADAGNIERF 360
            I + +WNP FGVMFF+YLGLAEGKS  DIQ KIKNDL TAV+GSWTVWIPAH +NF+FVP+SQRLLYIN+IQ             IGYNIFLSFLGNKK D+  V      A    +++ 
Sbjct:   93 IDQLLWNPCFGVMFFSYLGLAEGKSFADIQTKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQ-------------IGYNIFLSFLGNKKVDEPEVVKEAEAAVTSAVDKM 199          
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Match: A0A7S2RA66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA66_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.510e-42
Identity = 71/102 (69.61%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    1 IQKTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKADD 306
            I +  WNP FG+MFFTYLGLAEGKS  DI KKIK DL TAVMGSW VW+PAHTINF F+P SQRLLYIN+IQ             IGYNIFLSFLGNKK DD
Sbjct:   99 IDQVFWNPCFGIMFFTYLGLAEGKSFADIMKKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQ-------------IGYNIFLSFLGNKKVDD 187          
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Match: A0A7S2V4A9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A9_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.390e-42
Identity = 72/106 (67.92%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    1 IQKTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKADDDSVK 318
            I +  WNPIFG +FFTYLGLAEGKS  +I  KIK+DL TAVMGSWTVW+PAH INFKFVP+SQRLLYINTIQ             IGYNIFLSFLGNK AD+   K
Sbjct:   90 IDQLFWNPIFGTVFFTYLGLAEGKSGGEIVNKIKSDLKTAVMGSWTVWVPAHIINFKFVPSSQRLLYINTIQ-------------IGYNIFLSFLGNKSADEPEKK 182          
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Match: A0A7S2LHQ9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHQ9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.810e-41
Identity = 68/106 (64.15%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    1 IQKTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKADDDSVK 318
            I +TIWNPIFG+MFF YL L EGKS DD +KKI++DL TAVMGSW VW+PAHTINF F+P SQRLLYIN+IQ             IGYN+FLSFLGNKK D +  +
Sbjct:   90 IDQTIWNPIFGLMFFGYLNLVEGKSFDDYKKKIQSDLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQ-------------IGYNVFLSFLGNKKVDGEEAE 182          
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Match: A0A7R9Z9F5_9STRA (Hypothetical protein n=3 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9Z9F5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.970e-40
Identity = 70/108 (64.81%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 IQKTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKADDDSVKSA 324
            I +TIWNPIFG MFF YL L EGKS +D + KIK DL TAVMGSW VW+PAHTINF FVP SQRLLYINTIQ             IGYN+FLSFLGNK+ D +  K A
Sbjct:  117 IDQTIWNPIFGCMFFGYLNLMEGKSFEDYKNKIKADLKTAVMGSWAVWVPAHTINFAFVPPSQRLLYINTIQ-------------IGYNVFLSFLGNKEVDGEEKKEA 211          
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Match: B7G8P1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8P1_PHATC)

HSP 1 Score: 140 bits (353), Expect = 8.050e-40
Identity = 68/106 (64.15%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 IQKTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKADDDSVK 318
            I +TIWNPIFG MFF YL L EGKS+DD   KIK DL TAVMGSW VW+PAHTINF FVP +QRLLYINTIQ             IGYN+FLSFLGNK  +++  K
Sbjct:   91 IDQTIWNPIFGCMFFGYLNLMEGKSLDDYTTKIKTDLKTAVMGSWAVWVPAHTINFAFVPPAQRLLYINTIQ-------------IGYNVFLSFLGNKSVEEEPKK 183          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16105.4176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGB2_ECTSI1.800e-7188.19Peroxisomal membrane protein-related n=1 Tax=Ectoc... [more]
G3G651_9PHAE1.960e-5073.11Mpv17-like protein (Fragment) n=17 Tax=Fucaceae Ta... [more]
A0A835Z5E2_9STRA1.540e-4774.29Peroxisomal membrane protein-related n=1 Tax=Tribo... [more]
W7TJ93_9STRA1.070e-4368.81Mpv17-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
Q0IHG9_XENLA5.810e-4360.83MGC154358 protein n=1 Tax=Xenopus laevis TaxID=835... [more]
A0A7S2RA66_9STRA3.510e-4269.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V4A9_9STRA8.390e-4267.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2LHQ9_9STRA3.810e-4164.15Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7R9Z9F5_9STRA2.970e-4064.81Hypothetical protein n=3 Tax=Odontellaceae TaxID=2... [more]
B7G8P1_PHATC8.050e-4064.15Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16105contigE-fasciculatus_F_contig16105:1639..2214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.5
Seed ortholog evalue2.3e-55
Seed eggNOG ortholog2880.D8LGB2
KEGG koko:K13348
KEGG Pathwayko04146,map04146
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionperoxisomal membrane protein-related
Ec32 orthologEc-06_002720.1
Exons2
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928077.3719716-CDS-E-fasciculatus_F_contig16105:1638..18901622928077.3719716-CDS-E-fasciculatus_F_contig16105:1638..1890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16105 1639..1890 +
1695995814.2650068-CDS-E-fasciculatus_F_contig16105:1638..18901695995814.2650068-CDS-E-fasciculatus_F_contig16105:1638..1890Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16105 1639..1890 +
1622928077.3835204-CDS-E-fasciculatus_F_contig16105:2082..22141622928077.3835204-CDS-E-fasciculatus_F_contig16105:2082..2214Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16105 2083..2214 +
1695995814.2754147-CDS-E-fasciculatus_F_contig16105:2082..22141695995814.2754147-CDS-E-fasciculatus_F_contig16105:2082..2214Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16105 2083..2214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16105.4176.1prot_E-fasciculatus_F_contig16105.4176.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16105 1639..2214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16105.4176.1

>prot_E-fasciculatus_F_contig16105.4176.1 ID=prot_E-fasciculatus_F_contig16105.4176.1|Name=mRNA_E-fasciculatus_F_contig16105.4176.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=128bp
IQKTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIP
AHTINFKFVPTSQRLLYINTIQASYLGLCSSALRQIGYNIFLSFLGNKKA
DDDSVKSALVPADAGNIERFAEDAKED*
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mRNA from alignment at E-fasciculatus_F_contig16105:1639..2214+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16105.4176.1 ID=mRNA_E-fasciculatus_F_contig16105.4176.1|Name=mRNA_E-fasciculatus_F_contig16105.4176.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=576bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16105:1639..2214+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCCAAAAGACAATCTGGAACCCCATCTTCGGTGTGATGTTCTTCACCTA CCTGGGGCTGGCGGAGGGCAAGTCGGTCGACGACATCCAGAAGAAGATCA AGAACGACCTGGCCACCGCGGTCATGGGGTCTTGGACGGTGTGGATCCCA GCGCACACCATCAACTTTAAGTTCGTGCCCACGTCGCAGCGGTTGCTCTA CATCAACACCATCCAGGCAAGCTACCTTGGGCTATGTTCTTCCGCTCTAC GCGTGTACCGTGGTGGAATGTTCGCACGGCCTCCGCTCTCTTCGTATGTA TGAAGACTTGCTGCGATGATTTTTTGTGTTCATGAGCTCTCAGTCGTTTT TGTTCTAAGCCCCCCTCCCCCTGCGCTACTCTGCCTACTGAAAACATCGG CCACTGCCGGAAACGACGAACAACGCAACAACGAAACGTACGAGCAGATC GGGTACAACATCTTCTTGTCCTTCTTGGGCAACAAGAAGGCGGATGACGA CAGCGTCAAGTCGGCTCTCGTGCCGGCCGACGCGGGCAACATCGAGCGCT TTGCTGAGGATGCTAAGGAGGACTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16105:1639..2214+

>mRNA_E-fasciculatus_F_contig16105.4176.1 ID=mRNA_E-fasciculatus_F_contig16105.4176.1|Name=mRNA_E-fasciculatus_F_contig16105.4176.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16105:1639..2214+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCCAAAAGACAATCTGGAACCCCATCTTCGGTGTGATGTTCTTCACCTA
CCTGGGGCTGGCGGAGGGCAAGTCGGTCGACGACATCCAGAAGAAGATCA
AGAACGACCTGGCCACCGCGGTCATGGGGTCTTGGACGGTGTGGATCCCA
GCGCACACCATCAACTTTAAGTTCGTGCCCACGTCGCAGCGGTTGCTCTA
CATCAACACCATCCAGGCAAGCTACCTTGGGCTATGTTCTTCCGCTCTAC
GCATCCAAAAGACAATCTGGAACCCCATCTTCGGTGTGATGTTCTTCACC
TACCTGGGGCTGGCGGAGGGCAAGTCGGTCGACGACATCCAGAAGAAGAT
CAAGAACGACCTGGCCACCGCGGTCATGGGGTCTTGGACGGTGTGGATCC
CAGCGCACACCATCAACTTTAAGTTCGTGCCCACGTCGCAGCGGTTGCTC
TACATCAACACCATCCAGGCAAGCTACCTTGGGCTATGTTCTTCCGCTCT
ACGCCAGATCGGGTACAACATCTTCTTGTCCTTCTTGGGCAACAAGAAGG
CGGATGACGACAGCGTCAAGTCGGCTCTCGTGCCGGCCGACGCGGGCAAC
ATCGAGCGCTTTGCTGAGGATGCTAAGGAGGACTAGCAGATCGGGTACAA
CATCTTCTTGTCCTTCTTGGGCAACAAGAAGGCGGATGACGACAGCGTCA
AGTCGGCTCTCGTGCCGGCCGACGCGGGCAACATCGAGCGCTTTGCTGAG
GATGCTAAGGAGGACTAG
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