mRNA_E-fasciculatus_F_contig16090.4170.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Match: D8LL95_ECTSI (Coatomer subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL95_ECTSI) HSP 1 Score: 277 bits (709), Expect = 4.100e-84 Identity = 143/146 (97.95%), Postives = 143/146 (97.95%), Query Frame = 3
Query: 3 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSFKCPYCGSAYPPSAKGCVCVTCGLSQIGVETLGLVTTSSAG 440
RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPS KCPYCGSAYP SAKG VCVTCGLSQIGVETLGLVTTSSAG
Sbjct: 1110 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSCKCPYCGSAYPLSAKGMVCVTCGLSQIGVETLGLVTTSSAG 1255
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Match: A0A6H5KXQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXQ0_9PHAE) HSP 1 Score: 270 bits (690), Expect = 5.440e-83 Identity = 141/149 (94.63%), Postives = 143/149 (95.97%), Query Frame = 3
Query: 3 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIK---AQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSFKCPYCGSAYPPSAKGCVCVTCGLSQIGVETLGLVTTSSAG 440
R+MELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLR+K AQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPS KCPYCGSAYP SAKG VCVTCGLSQIGVETLGLVTTSSAG
Sbjct: 741 RNMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRLKVGLAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSCKCPYCGSAYPLSAKGTVCVTCGLSQIGVETLGLVTTSSAG 889
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Match: A0A835Z8J6_9STRA (Coatomer subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J6_9STRA) HSP 1 Score: 221 bits (562), Expect = 5.550e-64 Identity = 112/145 (77.24%), Postives = 127/145 (87.59%), Query Frame = 3
Query: 3 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSFKCPYCGSAYPPSAKGCVCVTCGLSQIGVETLGLVTTSSA 437
RSMEL AYFT CNLQPAHLLLALRMAM +AFK KNFITAASFAQRLLELPDL+SER+A+LR KAQK+LQKSQQMARNE LDYDERNPF +DC +LKPIYRG P KCPYC S+Y P++ VC TCG+SQ+GVETLGLVTT+++
Sbjct: 1082 RSMELSAYFTHCNLQPAHLLLALRMAMGTAFKNKNFITAASFAQRLLELPDLASERNAELRDKAQKILQKSQQMARNEVDLDYDERNPFVIDCATLKPIYRGAPVVKCPYCSSSYSPASDKTVCQTCGISQVGVETLGLVTTTAS 1226
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Match: A0A7S3YID5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YID5_HETAK) HSP 1 Score: 194 bits (494), Expect = 3.510e-60 Identity = 101/145 (69.66%), Postives = 116/145 (80.00%), Query Frame = 3
Query: 3 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSFKCPYCGSAYPPSAKGCVCVTCGLSQIGVETLGLVTTSSA 437
R MEL AYFT NLQP HLLLALR+AMASAFK KNFITAASFA+RLLELPD+SSE++ADL++KAQKVLQKS+QM NEH LDYDERNPF VD L PIYRG+P CP+C S Y P +C TC +SQIGVET+GLV+ +A
Sbjct: 93 RQMELGAYFTHQNLQPGHLLLALRLAMASAFKHKNFITAASFARRLLELPDISSEKNADLKLKAQKVLQKSEQMGSNEHALDYDERNPFAVDAADLVPIYRGSPEVTCPFCASHYQPRHANGLCATCNISQIGVETIGLVSQVAA 237
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Match: W7TRK7_9STRA (Coatomer subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRK7_9STRA) HSP 1 Score: 205 bits (521), Expect = 1.980e-58 Identity = 99/146 (67.81%), Postives = 126/146 (86.30%), Query Frame = 3
Query: 3 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSFKCPYCGSAYPPSAKGCVCVTCGLSQIGVETLGLVTTSSAG 440
R +EL AYFT CNLQPAHLLLALRMAM SAFK +N+ITAASFA RLLE+P+++SE++A+LR+KAQKVLQKS+QMARNEH ++YD+R F +DC++L PI RG P KC YCGS+Y P +KG +CVTCG+SQ+G+ETLGLVT++ +G
Sbjct: 1125 RQIELSAYFTHCNLQPAHLLLALRMAMVSAFKFQNYITAASFAHRLLEMPEMASEKNAELRLKAQKVLQKSEQMARNEHAIEYDDRQAFVIDCRTLLPIPRGAPCLKCSYCGSSYTPESKGVLCVTCGISQVGLETLGLVTSAGSG 1270
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Match: A0A7S2FV00_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV00_9STRA) HSP 1 Score: 190 bits (482), Expect = 1.640e-57 Identity = 96/145 (66.21%), Postives = 115/145 (79.31%), Query Frame = 3
Query: 3 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSFKCPYCGSAYPPSAKGCVCVTCGLSQIGVETLGLVTTSSA 437
R EL AYFT CNLQPAHLLLAL+ AM S FK KN+ITAASFA RLLELP++SSE++ADL+ KAQKV+ KS++ RNEHTL YDERNPF++DCQ+ P+YRG+P KC YCGSAY P +C TCG++ IGVETLGL T S+
Sbjct: 161 RMTELWAYFTHCNLQPAHLLLALKSAMISGFKIKNYITAASFAHRLLELPEVSSEKNADLKGKAQKVILKSEKEGRNEHTLQYDERNPFDIDCQAFVPVYRGSPVVKCAYCGSAYQPECTNKLCTTCGIALIGVETLGLPTGRSS 305
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Match: A0A7S3GXR2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXR2_9STRA) HSP 1 Score: 195 bits (495), Expect = 2.160e-57 Identity = 94/144 (65.28%), Postives = 119/144 (82.64%), Query Frame = 3
Query: 3 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSFKCPYCGSAYPPSAKGCVCVTCGLSQIGVETLGLVTTSS 434
R +EL AYFT CNLQP+HL+LAL+ AMASAFK KNFI AASFA+RLLELPD++SE++AD R KAQKVLQKS+Q RNE+T+DYDERNPF +DC +LKP+Y+GTP KC YC + Y KG +C+ CG+S +G++T+GLVT S+
Sbjct: 353 RGLELAAYFTHCNLQPSHLMLALKTAMASAFKNKNFINAASFARRLLELPDMNSEKNADSRSKAQKVLQKSEQQGRNEYTIDYDERNPFSLDCSTLKPLYKGTPLVKCSYCAACYAVDYKGKLCLICGISTVGLDTVGLVTQSA 496
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Match: A0A7S3GXJ7_9STRA (Coatomer subunit alpha n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXJ7_9STRA) HSP 1 Score: 195 bits (495), Expect = 6.290e-55 Identity = 94/144 (65.28%), Postives = 119/144 (82.64%), Query Frame = 3
Query: 3 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSFKCPYCGSAYPPSAKGCVCVTCGLSQIGVETLGLVTTSS 434
R +EL AYFT CNLQP+HL+LAL+ AMASAFK KNFI AASFA+RLLELPD++SE++AD R KAQKVLQKS+Q RNE+T+DYDERNPF +DC +LKP+Y+GTP KC YC + Y KG +C+ CG+S +G++T+GLVT S+
Sbjct: 1110 RGLELAAYFTHCNLQPSHLMLALKTAMASAFKNKNFINAASFARRLLELPDMNSEKNADSRSKAQKVLQKSEQQGRNEYTIDYDERNPFSLDCSTLKPLYKGTPLVKCSYCAACYAVDYKGKLCLICGISTVGLDTVGLVTQSA 1253
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Match: A0A7S1Z9W7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z9W7_9STRA) HSP 1 Score: 185 bits (469), Expect = 1.650e-53 Identity = 97/143 (67.83%), Postives = 110/143 (76.92%), Query Frame = 3
Query: 3 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSFKCPYCGSAYPPSAKGCVCVTCGLSQIGVETLGLVTTS 431
RS EL AYFT CNLQP HLLLALR AM +AFK KNFI AASFA+RLLELPD++SER+ADLR+KA KVLQKS+QMARNEHTL+Y E F +DC+ PIY S KC YCGS Y S KG VC TC S +GV+T+GLVT S
Sbjct: 364 RSTELSAYFTHCNLQPIHLLLALRSAMGTAFKHKNFILAASFARRLLELPDMASERNADLRVKATKVLQKSEQMARNEHTLNYKENTTFYIDCKEFVPIYSEAESAKCSYCGSHYSESMKGMVCTTCTFSTVGVQTIGLVTGS 506
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Match: A0A7S2IKP0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IKP0_9STRA) HSP 1 Score: 188 bits (478), Expect = 1.200e-52 Identity = 98/143 (68.53%), Postives = 113/143 (79.02%), Query Frame = 3
Query: 3 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSFKCPYCGSAYPPSAKGCVCVTCGLSQIGVETLGLVTTS 431
RS EL AYFT CNLQP HLLLALR AM +AFK KNFI AASFA+RLLELPD++SER+ADLR+KA KVLQKS+QMARNEH L+Y+E F +DC+ PIY S KC YCGSAY S KG VC+TCG S +GV+T+GLVT S
Sbjct: 1019 RSTELSAYFTHCNLQPIHLLLALRSAMGTAFKHKNFIVAASFARRLLELPDMASERNADLRVKATKVLQKSEQMARNEHKLNYNENAAFSIDCKDFVPIYSDGDSAKCSYCGSAYSTSMKGQVCLTCGFSTVGVQTIGLVTGS 1161 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16090.4170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16090.4170.1 >prot_E-fasciculatus_F_contig16090.4170.1 ID=prot_E-fasciculatus_F_contig16090.4170.1|Name=mRNA_E-fasciculatus_F_contig16090.4170.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp CAAWSCWRTSPVATCSRRTCCWPSAWPWPARSRARTLSRRPASRSACSSCback to top mRNA from alignment at E-fasciculatus_F_contig16090:257..1411- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16090.4170.1 ID=mRNA_E-fasciculatus_F_contig16090.4170.1|Name=mRNA_E-fasciculatus_F_contig16090.4170.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1155bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16090:257..1411- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16090:257..1411- >mRNA_E-fasciculatus_F_contig16090.4170.1 ID=mRNA_E-fasciculatus_F_contig16090.4170.1|Name=mRNA_E-fasciculatus_F_contig16090.4170.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16090:257..1411- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |