mRNA_E-fasciculatus_F_contig1609.4168.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1609.4168.1
Unique NamemRNA_E-fasciculatus_F_contig1609.4168.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Match: D7FY69_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY69_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 2.870e-62
Identity = 104/116 (89.66%), Postives = 106/116 (91.38%), Query Frame = 1
Query:    1 GNGNAVLFKSKPEVFTFSIHCKANYFSEKEASTRHSDVDVEVEEGAGDEEYLRLLSERLPSLVDQVRPDLIFYQGGVDPLVHDRLGRLSLTREGLRLRNSLVYDTALARGIPTVVT 348
            GNGNAVLFKSKPEV TFSIHCKANYFSEKE     SDVD+EVEEGAGDEEYL LLSERLPSLVD VRPDLIFYQGGVDPL HDRLGRLSLTREGLRLRN LVYDTALARGIPTV+T
Sbjct:  191 GNGNAVLFKSKPEVSTFSIHCKANYFSEKE----DSDVDIEVEEGAGDEEYLSLLSERLPSLVDHVRPDLIFYQGGVDPLEHDRLGRLSLTREGLRLRNRLVYDTALARGIPTVLT 302          
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Match: A0A6H5K9Q6_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q6_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.530e-40
Identity = 74/93 (79.57%), Postives = 78/93 (83.87%), Query Frame = 1
Query:   97 TRHSDVDVEVEEGAGDEEYLRLLSERLPSLVDQVRPDLIFYQ---------GGVDPLVHDRLGRLSLTREGLRLRNSLVYDTALARGIPTVVT 348
            T+ SDVD+EVEEGAGD EYL LLSE LPSLVDQVRPDLIFYQ         GGVDPL HDRLGRLSLTR+GLRLRN LVYDTALARGIPTV+T
Sbjct:    4 TQDSDVDIEVEEGAGDAEYLSLLSEHLPSLVDQVRPDLIFYQIRSDAVVYQGGVDPLEHDRLGRLSLTRDGLRLRNRLVYDTALARGIPTVLT 96          
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Match: A0A7S2E319_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E319_9STRA)

HSP 1 Score: 140 bits (352), Expect = 7.680e-40
Identity = 70/116 (60.34%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 GNGNAVLFKSKPEVFTFSIHCKANYFSEKEASTRHSDVDVEVEEGAGDEEYLRLLSERLPSLVDQVRPDLIFYQGGVDPLVHDRLGRLSLTREGLRLRNSLVYDTALARGIPTVVT 348
            GNGNA +FK+ P+VFTFS+HC ANYFS+ E S     +D+EV EGA D+ YL +L   LP L+ +V P L+F+Q GVDPL  DRLGRLSLTR GLR RN LVYDT L+ G+  VVT
Sbjct:   26 GNGNADIFKTDPDVFTFSVHCAANYFSKVETSN----LDLEVPEGADDDAYLTILQRWLPILMREVNPSLVFFQSGVDPLQSDRLGRLSLTRAGLRRRNQLVYDTCLSHGVSVVVT 137          
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Match: A0A835Z933_9STRA (Hist_deacetyl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z933_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.670e-36
Identity = 69/116 (59.48%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 GNGNAVLFKSKPEVFTFSIHCKANYFSEKEASTRHSDVDVEVEEGAGDEEYLRLLSERLPSLVDQVRPDLIFYQGGVDPLVHDRLGRLSLTREGLRLRNSLVYDTALARGIPTVVT 348
            GNGNA LF     V+TFS+HCKANYFS ++    +SD+DVEV+  AGD+ YL L+ + +P L+DQVRPDL+FYQ GVDPL  DRLG L LTREGL  RN +VY  AL R    VVT
Sbjct:  191 GNGNAALFAGNDAVYTFSMHCKANYFSARQ----YSDMDVEVDASAGDDAYLSLVEQWVPKLLDQVRPDLVFYQAGVDPLWCDRLGHLKLTREGLSRRNRIVYSAALQRCTRLVVT 302          
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Match: A0A7S3MFR4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFR4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.270e-35
Identity = 67/116 (57.76%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 GNGNAVLFKSKPEVFTFSIHCKANYFSEKEASTRHSDVDVEVEEGAGDEEYLRLLSERLPSLVDQVRPDLIFYQGGVDPLVHDRLGRLSLTREGLRLRNSLVYDTALARGIPTVVT 348
            GNGNAVLFK+ P VFTFS+HCK NYFS+KE    HS++DVEVE G  DEEYL  L+  LP L ++V+P L+F+Q GVD    DRLG+L +TR GL+ RN  VY   + R I  VVT
Sbjct:   38 GNGNAVLFKNDPRVFTFSMHCKDNYFSKKE----HSNIDVEVEAGCQDEEYLAKLNLWLPILFEKVQPQLVFFQAGVDIYEGDRLGKLKITRTGLQQRNQAVYREIVKRKIKCVVT 149          
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Match: A0A7S4FM83_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FM83_9EUGL)

HSP 1 Score: 129 bits (325), Expect = 3.360e-35
Identity = 64/116 (55.17%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 GNGNAVLFKSKPEVFTFSIHCKANYFSEKEASTRHSDVDVEVEEGAGDEEYLRLLSERLPSLVDQVRPDLIFYQGGVDPLVHDRLGRLSLTREGLRLRNSLVYDTALARGIPTVVT 348
            GNGNAVLF+    VFTFS+HC+ANYFS+K+ S     +DVE+ +G  D+EY+R L   LP L+DQ++P L++YQ GVD  V DRLG++ ++REGLR RN  VY+ AL R IP V T
Sbjct:   89 GNGNAVLFQEDERVFTFSMHCEANYFSKKQVSN----LDVELPKGCNDKEYMRHLRWHLPRLLDQLQPSLVYYQAGVDIFVGDRLGKMDISREGLRERNWYVYEEALTRDIPLVTT 200          
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Match: A0A7S0H8Q2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0H8Q2_9EUKA)

HSP 1 Score: 125 bits (313), Expect = 2.330e-34
Identity = 65/116 (56.03%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 GNGNAVLFKSKPEVFTFSIHCKANYFSEKEASTRHSDVDVEVEEGAGDEEYLRLLSERLPSLVDQVRPDLIFYQGGVDPLVHDRLGRLSLTREGLRLRNSLVYDTALARGIPTVVT 348
            GNG AVLF+ +P V TFS+HC  N+FS+K+     SD+DVEV  GAGD EYL LL E LP L ++V+PDL F+Q GVDP   D LG+L L+  GL+ RN LVYD A A     VVT
Sbjct:   32 GNGCAVLFQDEPRVTTFSLHCAGNFFSDKQ----RSDLDVEVPPGAGDAEYLALLQEHLPPLFERVKPDLTFFQAGVDPHEDDALGKLRLSSAGLKRRNKLVYDQAAAHATRLVVT 143          
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Match: A0A7S1IVC4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IVC4_9EUGL)

HSP 1 Score: 128 bits (321), Expect = 1.510e-33
Identity = 62/116 (53.45%), Postives = 84/116 (72.41%), Query Frame = 1
Query:    1 GNGNAVLFKSKPEVFTFSIHCKANYFSEKEASTRHSDVDVEVEEGAGDEEYLRLLSERLPSLVDQVRPDLIFYQGGVDPLVHDRLGRLSLTREGLRLRNSLVYDTALARGIPTVVT 348
            GNGNAVLFK++  VFTFS+HCK NYFS+K+ S    D+D+E+ +G  D+EYL +L   L  L D+V+PDL+F+Q GVD    D+LG++ LTR GL  RN  VY+TA+ R +P V+T
Sbjct:  185 GNGNAVLFKNEDRVFTFSMHCKQNYFSQKQTS----DLDIELPKGCTDQEYLAVLQMHLARLFDRVQPDLVFFQAGVDVFYQDKLGKMLLTRGGLLRRNRHVYETAIFRQVPVVIT 296          
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Match: A0A0G4EU19_VITBC (Hist_deacetyl domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EU19_VITBC)

HSP 1 Score: 128 bits (322), Expect = 3.210e-33
Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 GNGNAVLFKSKPEVFTFSIHCKANYFSEKEASTRHSDVDVEVEEGAGDEEYLRLLSERLPSLVDQVRPDLIFYQGGVDPLVHDRLGRLSLTREGLRLRNSLVYDTALA---RGIPTVVT 348
            GNGNAVLF+ +  VFT S+HC ANYFS KEAS     VD+EV EG GD  YL LL++ LP +V + RPDLIFYQ GVD L  DR G+LSL+R GL+ RN LVY+ A+      +P VVT
Sbjct:  240 GNGNAVLFQDQSNVFTLSVHCTANYFSPKEASH----VDIEVPEGTGDGAYLSLLAKTLPDIVREFRPDLIFYQSGVDCLKTDRFGKLSLSRGGLQTRNRLVYEMAMTDKHTPVPVVVT 354          
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Match: A0A8J5XGD3_DIALT (Hist_deacetyl domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XGD3_DIALT)

HSP 1 Score: 124 bits (310), Expect = 4.320e-32
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 GNGNAVLFKSKPEVFTFSIHCKANYFSEKEASTRHSDVDVEVEEGAGDEEYLRLLSERLPSLVDQVRPDLIFYQGGVDPLVHDRLGRLSLTREGLRLRNSLVYDTALARGIPTVVT 348
            GNGNAVLFK +  VFTFS+HC  NYFS  EAS    D+D+EV  GAGD EY   L   LP L   + P L+F+QGGVDPL +DR G+L L+R GLR RN  V+      G+P VVT
Sbjct:  167 GNGNAVLFKDEHRVFTFSMHCAGNYFSPVEAS----DLDIEVPIGAGDAEYCGKLEAVLPPLFHALAPQLVFFQGGVDPLANDRYGKLQLSRAGLRRRNEAVFGLCAQHGVPLVVT 278          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1609.4168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY69_ECTSI2.870e-6289.66Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K9Q6_9PHAE2.530e-4079.57Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
A0A7S2E319_9STRA7.680e-4060.34Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z933_9STRA2.670e-3659.48Hist_deacetyl domain-containing protein n=1 Tax=Tr... [more]
A0A7S3MFR4_9STRA2.270e-3557.76Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4FM83_9EUGL3.360e-3555.17Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S0H8Q2_9EUKA2.330e-3456.03Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S1IVC4_9EUGL1.510e-3353.45Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0G4EU19_VITBC3.210e-3357.98Hist_deacetyl domain-containing protein n=2 Tax=Vi... [more]
A0A8J5XGD3_DIALT4.320e-3255.17Hist_deacetyl domain-containing protein n=1 Tax=Di... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1609contigE-fasciculatus_F_contig1609:15066..16049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size351
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1609.4168.1prot_E-fasciculatus_F_contig1609.4168.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1609 15468..16045 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928075.7897506-UTR-E-fasciculatus_F_contig1609:15065..151941622928075.7897506-UTR-E-fasciculatus_F_contig1609:15065..15194Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1609 15066..15194 -
1695995813.237766-UTR-E-fasciculatus_F_contig1609:15065..151941695995813.237766-UTR-E-fasciculatus_F_contig1609:15065..15194Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1609 15066..15194 -
1622928075.8043194-UTR-E-fasciculatus_F_contig1609:15456..154671622928075.8043194-UTR-E-fasciculatus_F_contig1609:15456..15467Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1609 15457..15467 -
1695995813.2479503-UTR-E-fasciculatus_F_contig1609:15456..154671695995813.2479503-UTR-E-fasciculatus_F_contig1609:15456..15467Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1609 15457..15467 -
1622928075.84031-UTR-E-fasciculatus_F_contig1609:16045..160491622928075.84031-UTR-E-fasciculatus_F_contig1609:16045..16049Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1609 16046..16049 -
1695995813.2955973-UTR-E-fasciculatus_F_contig1609:16045..160491695995813.2955973-UTR-E-fasciculatus_F_contig1609:16045..16049Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1609 16046..16049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928075.816611-CDS-E-fasciculatus_F_contig1609:15467..155761622928075.816611-CDS-E-fasciculatus_F_contig1609:15467..15576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1609 15468..15576 -
1695995813.259434-CDS-E-fasciculatus_F_contig1609:15467..155761695995813.259434-CDS-E-fasciculatus_F_contig1609:15467..15576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1609 15468..15576 -
1622928075.8271568-CDS-E-fasciculatus_F_contig1609:15947..160451622928075.8271568-CDS-E-fasciculatus_F_contig1609:15947..16045Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1609 15948..16045 -
1695995813.273004-CDS-E-fasciculatus_F_contig1609:15947..160451695995813.273004-CDS-E-fasciculatus_F_contig1609:15947..16045Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1609 15948..16045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1609.4168.1

>prot_E-fasciculatus_F_contig1609.4168.1 ID=prot_E-fasciculatus_F_contig1609.4168.1|Name=mRNA_E-fasciculatus_F_contig1609.4168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MGTPCCSSRNLRFSRSASTARPTTSPRRRRARVIPTWMLRWRKVPGTRSI
CAYCPNAFLVLWTRSGQT*
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mRNA from alignment at E-fasciculatus_F_contig1609:15066..16049-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1609.4168.1 ID=mRNA_E-fasciculatus_F_contig1609.4168.1|Name=mRNA_E-fasciculatus_F_contig1609.4168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1609:15066..16049- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAATGGGAACGCCGTGCTGTTCAAGTCGAAACCTGAGGTTTTCACGTT CAGCATCCACTGCAAGGCCAACTACTTCTCCGAGAAGGAGGCGAGCACGC GTGTCCCGCATGTATCTTCATTCCAATTTCACTGCGCTCTCGATCGTTCG TGTTCGGCACCACGGTTCATTCCAGCTTCACGTTTCTCTGTCGTCCGTGT TCTGCATGTCGATTCATGTCAACTTCACTGTGCTTTATCGCTCGTGTTCC GCTTGTCGATTCATTACAATTTCACCATTCTCTACCGGTCTTCACGCATC TCATTCATTCCAATTTCACTGCACGTGCTGGCCTTGAAAGTTGCGACCAC ATCATGATATCGGGCCCTCCCCCGTACATGGCAAATGAAGCCCCCCCCGG CCAACGGTCTGACGACTATGGCATGCCTTTACGCGAGTTAACCCCCCCCC CCCCGGGTATTCCGTGCACGTAGCATTCCGACGTGGATGTTGAGGTGGAG GAAGGTGCCGGGGACGAGGAGTATCTGCGCCTATTGTCCGAACGCCTTCC TAGTCTTGTGGACCAGGTCCGGCCAGACCTAATATTTTACCAGGTACGCA GAAAGATGAAACTGCCAGATTTTCTTTCAAGCTTAGTGGTTCATGTCCGA CCACATGAGCGCTGGTGCACAACATGAACGTAAAACCCGAGACGTAATCC GTGGGCTCTCGATGAAAAACTCTCGTAATTCAACACGGAATTTTACAACA CCTGTGAACTTTTGGTGTTGGTGGGAGGAAGACATCTGATTTCGTGAGTA TGTCGGTCGTGTGTCACTGTGTGCCCTCGACGGTTGGCGCTGGCAACGGC AACAGGGAGGCGTCGACCCCCTAGTGCACGACCGGCTGGGGAGGTTAAGC CTCACAAGGGAGGGGCTGCGCCTCCGAAATAGCCTGGTATACGACACCGC GCTTGCGAGGGGCATCCCTACCGTGGTGACGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1609:15066..16049-

>mRNA_E-fasciculatus_F_contig1609.4168.1 ID=mRNA_E-fasciculatus_F_contig1609.4168.1|Name=mRNA_E-fasciculatus_F_contig1609.4168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1609:15066..16049- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGAACGCCGTGCTGTTCAAGTCGAAACCTGAGGTTTTCACGTTCAGC
ATCCACTGCAAGGCCAACTACTTCTCCGAGAAGGAGGCGAGCACGCGTAT
GGGAACGCCGTGCTGTTCAAGTCGAAACCTGAGGTTTTCACGTTCAGCAT
CCACTGCAAGGCCAACTACTTCTCCGAGAAGGAGGCGAGCACGCGTCATT
CCGACGTGGATGTTGAGGTGGAGGAAGGTGCCGGGGACGAGGAGTATCTG
CGCCTATTGTCCGAACGCCTTCCTAGTCTTGTGGACCAGGTCCGGCCAGA
CCTAACATTCCGACGTGGATGTTGAGGTGGAGGAAGGTGCCGGGGACGAG
GAGTATCTGCGCCTATTGTCCGAACGCCTTCCTAGTCTTGTGGACCAGGT
CCGGCCAGACCTAA
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