mRNA_E-fasciculatus_F_contig16088.4165.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16088.4165.1
Unique NamemRNA_E-fasciculatus_F_contig16088.4165.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Match: D7G152_ECTSI (Mcl1_mid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G152_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 5.530e-124
Identity = 213/242 (88.02%), Postives = 222/242 (91.74%), Query Frame = 1
Query:    1 SQSFGWQWAPLLDTLKVSKNKRNRFWPVGVVSGKLLAATLKGGEEHPAAYPRPVITAVPLTALCAQSQDGEEMSKFEKSFPAMEARARQRKFNLDHGLVMGDDVSAEPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKFQGPENEDAFDEDEGFEAGEGGLARGXXXXXXXXXXXXXM---DEEQNLGPLDRARLEQA 717
            ++SFGWQW PLLDTLKVSK+KR RFWPVGVVSGKLLAATLK GEEHPAAYPRPVITAVPLTA+CAQSQDGEEMSKF+KSFPAMEARA+QRKFNLDHGLVMGDDVSAEPE EMEGELM Q A LDTMVVKRIQEACAAEK ERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKFQGP++EDAFD DEG EAG+GG AR     XXXXXXXXX    DEEQNLGPLDRARLEQA
Sbjct:  563 TRSFGWQWTPLLDTLKVSKSKRYRFWPVGVVSGKLLAATLKDGEEHPAAYPRPVITAVPLTAICAQSQDGEEMSKFDKSFPAMEARAKQRKFNLDHGLVMGDDVSAEPE-EMEGELMTQLAKLDTMVVKRIQEACAAEKPERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKFQGPDDEDAFDGDEGSEAGDGGWARSGRSGXXXXXXXXXXXXXDEEQNLGPLDRARLEQA 803          
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Match: A0A6H5KWI2_9PHAE (Mcl1_mid domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI2_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 2.180e-107
Identity = 168/182 (92.31%), Postives = 174/182 (95.60%), Query Frame = 1
Query:    1 SQSFGWQWAPLLDTLKVSKNKRNRFWPVGVVSGKLLAATLKGGEEHPAAYPRPVITAVPLTALCAQSQDGEEMSKFEKSFPAMEARARQRKFNLDHGLVMGDDVSAEPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAK 546
            ++SFGWQW PLLDTLKVSK+KR RFWPVGVVSGKLLAATLK GEEHPAAYPRPVITAVPLTA+CAQSQDGEEMSKFEK+FP+MEARARQRKFNLDHGLVMGDDVSAEPE EMEGELM Q A LDTMVVKRIQEACAAEK ERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAK
Sbjct:   82 TRSFGWQWTPLLDTLKVSKSKRYRFWPVGVVSGKLLAATLKDGEEHPAAYPRPVITAVPLTAICAQSQDGEEMSKFEKTFPSMEARARQRKFNLDHGLVMGDDVSAEPE-EMEGELMTQLAKLDTMVVKRIQEACAAEKPERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAK 262          
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Match: A0A836CJ04_9STRA (Mcl1_mid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ04_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.800e-19
Identity = 67/194 (34.54%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   46 KVSKNKRNRFWPVGVVSGKLLAATLKGGEEHPAAYPRPVITAVPLTALCAQSQDGEEMSKFEKSF--------PAMEARARQRKFNL----------DHGLVMGDDVSAEPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKFQGPENEDA 573
            + + +  +R WPV V    L A  LKG E+ PA +PRPV+T V L     +  +G   ++FE S          A EAR   RK             D G +   D           E + + A +D  V+K +QEA   +   RA+DL++ L+LEKS++IAI++ANHHGL+ LAA +D  M   F      DA
Sbjct:  822 ETAASTHSRMWPVSVAGAHLTAVALKGSEKFPATFPRPVVTQVALAVPPVRGPEGAAAARFEASLMLAKATRRAAAEARLALRKAMRAAGVRAERWDDGGELQDFDEVXXXXXXXXXEHLLELADIDKGVLKALQEAITQQNQGRALDLAARLNLEKSHTIAIRLANHHGLSQLAASIDACMQRLFNDDGGNDA 1015          
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Match: A0A139A7A8_GONPJ (WD40 repeat-like protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A7A8_GONPJ)

HSP 1 Score: 86.3 bits (212), Expect = 1.180e-15
Identity = 60/175 (34.29%), Postives = 95/175 (54.29%), Query Frame = 1
Query:   22 WAPLLDTLKVSKNKRNRFWPVGVVSGKLLAATLKGGEEHPAAYPRPVITAVPLTALCAQSQDGEEMSKFEKSFPAMEARARQRKFNLDHGLVMGDDVSAEPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAK 546
            WAPL DT  + + K+  +WP+GV   KL+    KGG++ P  YP  +I+ + L A          ++  E S  AME +  + K  L H   + +  SA+     E +L+ ++   D + ++ IQ AC AEK++RA+DLS+ L+L +S   A+K+A HH L  LA  ++    AK
Sbjct:  651 WAPLCDTRILRQGKQEWYWPIGVTDSKLMFVITKGGQKSPQ-YPNRLISELDLKAPF--------LALDESSLGAMEEKLYRLKIILTH---LENQASAD-----ERDLLRRKIESDKVALQLIQNACKAEKAQRALDLSTHLYLSQSLDGAVKLAVHHHLPGLAERINIVKEAK 808          
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Match: A0A7S0UJP5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJP5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.360e-15
Identity = 66/193 (34.20%), Postives = 105/193 (54.40%), Query Frame = 1
Query:    7 SFGWQWAPLLDTLKVSKNKRNRFWPVGVVSGKLLAATLKGGEEHPAAYPRPVITAVPLTALCAQSQDGEEMSKFEKSFPAMEARARQRKFNLDHGLVMGDDVSAEPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKFQGPENEDAFDED 585
            ++ W+WAP+LDT+ + K+  +  WPV V +GKL+   LKGG  +P A  RPV T + L    A+S   +  +  E S  +  A + Q+KF  +       D  +E   ++E E +A  A +D + ++       + K E A DL S LH EKSY IAI++A+ H    LA  ++   V K++ P+++D  +ED
Sbjct:  184 TYIWEWAPVLDTIGLRKSSDDYHWPVTVHNGKLVCIPLKGGNTYPDANRRPVTTTLGLKMPLAKSVVSKNSALEELSVRSNIALS-QKKFLREL------DCDSE---DLEAEYVALCAQVDKVTLRLYSGMVDSGKLESAFDLVSRLHSEKSYEIAIRLADRH--YKLADEVE--RVKKYKFPDDDDVSNED 362          
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Match: A0A8H7UD51_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UD51_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 8.120e-14
Identity = 55/186 (29.57%), Postives = 91/186 (48.92%), Query Frame = 1
Query:   22 WAPLLDTLKVSKNKR--NRFWPVGVVSGKLLAATLKGGEEHPAAYPRPVITAVPLTALCAQSQDGEEMSKFEKSFPAMEARARQRKFNLDHGLVMGDDVSA-EPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKFQGPENED 570
            W P+ D  KV++ +     +WPVG++  +++   LKG      A+PRPVI+ + L           E +K E+S+      +   +          D+ +A   E E    L      +D  +++ IQ AC AEKS+RA+D++  LHL +S   A+K+A+HH + +LA   +     KF    N+D
Sbjct:  654 WVPVFDGSKVAQERGLDEHYWPVGLLRDQIMCLVLKGKTNQYPAFPRPVISNIILQMPFLHMDT--ETTKLEESYVRTNIMSTHER----------DEATATSQEDEFHRILSNADIEMDKTLLRLIQFACKAEKSQRAIDIAKSLHLSRSLDAAVKIASHHRMPALAERFNQIKETKFMSSINDD 827          
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Match: A0A7S2XSN8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSN8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-13
Identity = 63/204 (30.88%), Postives = 98/204 (48.04%), Query Frame = 1
Query:    1 SQSFGWQWAPLLDTLKVSKNKRNRFWPVGVVSGKLLAATLKGGEEHPAAYPRPVITAVPLTALCAQSQDGEEMSKFEKSFPAMEARARQRKFNLDHGLVMGDDVSAEPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKFQGPENEDAFDEDEGFEAGEGG 612
            S    ++W P+LDTL + K+  + FWP+ V+ GKL+   LKGG EHP A  RPV T +      A+    +     E S  A  A  +++ FN    ++  D  + +   E    + +Q   +D + +K         K ERA+DL S LHLEKS+ +AI +++      L+  ++     +F  P  ED  D+    E G  G
Sbjct:  112 STGNSFEWLPMLDTLGLKKSDDDVFWPITVLDGKLVCVPLKGGNEHPDATRRPVTTTLSFRMPLARGTATKSSMLEEVSVRANIALNQKKFFN---DIISADHENPDDLLEEYDSVCSQ---VDKVTLKLFIGYLEGGKVERALDLVSRLHLEKSFDVAITLSDRMSQGKLSDRIEIVKECRFTLP-LEDEMDDGSFIEDGADG 308          
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Match: F4NTR3_BATDJ (Mcl1_mid domain-containing protein n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4NTR3_BATDJ)

HSP 1 Score: 77.8 bits (190), Expect = 9.520e-13
Identity = 56/179 (31.28%), Postives = 88/179 (49.16%), Query Frame = 1
Query:   22 WAPLLDTLKVSKNKRNRFWPVGVVSGKLLAATLKGGEEHPAAYPRPVITAVPLTALCAQSQDGEEMSKFEKSFPAMEARARQRKFNLDHGLV---MGDDVSAEPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKF 549
            W PLLDT  V   K++ +W +GVV  + +    K  +     +P+P+I  +PL     Q         F  +   ME    Q+K  L H +    M  D  ++ ++      + +  ALD  V+K I  AC AE+S+RA+DL S+LH  KS   A K+A H  L +LA+ ++    A++
Sbjct:  679 WVPLLDTDVVRGTKQDHYWALGVVGSQFMCIICKNDKTPQ--FPKPIINELPLQVPFCQ---------FNLTSTQMEESFFQQKLFLRHKIAENSMNMDEFSDNDSHDTDMFLHENLALDKTVLKLIHGACTAERSQRALDLCSMLHSTKSLEGATKLAIHLHLPNLASRINSIKEARY 846          
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Match: A0A2G5B252_COERN (Mcl1_mid domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B252_COERN)

HSP 1 Score: 75.5 bits (184), Expect = 5.710e-12
Identity = 56/189 (29.63%), Postives = 95/189 (50.26%), Query Frame = 1
Query:   22 WAPLLDTLKVSKN--KRNRFWPVGVVSGKLLAATLKGGEEHPAAYPRPVITA--VPLTALCAQSQDGEEMSKF--EKSFPAMEARARQRKFNLDHGLVMGDDVSAEPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKFQGPENED 570
            W P+LDT ++S+   K   FWPV + + + +  T +G    P  +PRP++    V +  L + +Q G++ +KF   + F   +    +R      G   GD   A  E E            D ++++ IQ AC A+KS+RA+DL+ ++ LE+S+  A+K+A +   T+LA  +      +F G E  D
Sbjct:  652 WMPVLDTRRLSRERGKHENFWPVALSARQFIVVTCRGKSRFPP-FPRPILDELDVEMPLLHSDTQVGQQEAKFLAVRVFCEQQQGEAERTGKEYPG---GDTAHARDELEQ-----------DKLLLRLIQLACKADKSQRAVDLALMIRLERSFDAALKIAIYQKQTALAERLVRIKEHRFAGDEYSD 825          
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Match: A0A7S2XVD2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XVD2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.630e-6
Identity = 53/179 (29.61%), Postives = 82/179 (45.81%), Query Frame = 1
Query:   76 WPVGVVSGKLLAATLKGGEEHPAAYPRPVITAVPLTALCAQSQDGEEMSKFEKSFPAMEARARQRKFNLDHGLVMGDDVSAEPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLLHLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKFQGPENEDAFDEDEGFEAGEGG 612
            W + V+ GKL+   LKGG EHP A  RPV T +      A+    +     E S  A  A  +++ FN    ++  D  + +   E    + +Q   +D + +K         K ERA+DL S LHLEKS+ +AI +++      L+  ++     +F  P  ED  D+    E G  G
Sbjct:    3 WTITVLDGKLVCVPLKGGNEHPDATRRPVTTTLSFRMPLARGTATKSSMLEEVSVRANIALNQKKFFN---DIISADHENPDDLLEEYDSVCSQ---VDKVTLKLFIGYLEGGKVERALDLVSRLHLEKSFDVAITLSDRMSQGKLSDRIEIVKECRFTLP-LEDEMDDGSFIEDGADG 174          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16088.4165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G152_ECTSI5.530e-12488.02Mcl1_mid domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KWI2_9PHAE2.180e-10792.31Mcl1_mid domain-containing protein n=1 Tax=Ectocar... [more]
A0A836CJ04_9STRA1.800e-1934.54Mcl1_mid domain-containing protein n=1 Tax=Tribone... [more]
A0A139A7A8_GONPJ1.180e-1534.29WD40 repeat-like protein n=1 Tax=Gonapodya prolife... [more]
A0A7S0UJP5_9STRA2.360e-1534.20Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A8H7UD51_9FUNG8.120e-1429.57Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A7S2XSN8_9STRA1.400e-1330.88Hypothetical protein n=1 Tax=Attheya septentrional... [more]
F4NTR3_BATDJ9.520e-1331.28Mcl1_mid domain-containing protein n=1 Tax=Batrach... [more]
A0A2G5B252_COERN5.710e-1229.63Mcl1_mid domain-containing protein n=1 Tax=Coemans... [more]
A0A7S2XVD2_9STRA1.630e-629.61Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16088contigE-fasciculatus_F_contig16088:15..2563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.4
Seed ortholog evalue1.2e-105
Seed eggNOG ortholog2880.D7G152
Preferred nameWDHD1
KEGG koko:K11274
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000727,GO:0000775,GO:0000785,GO:0000790,GO:0000819,GO:0000981,GO:0001302,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0019219,GO:0019222,GO:0019899,GO:0022402,GO:0022616,GO:0030702,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033260,GO:0033301,GO:0033554,GO:0033567,GO:0034085,GO:0034641,GO:0034645,GO:0035185,GO:0040029,GO:0042023,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043954,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045448,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0061641,GO:0065007,GO:0070013,GO:0070063,GO:0070827,GO:0070828,GO:0070829,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902679,GO:1902969,GO:1903047,GO:1903461,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.heterochromatin maintenance
EggNOG OGsKOG1274@1,KOG1274@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size720
Cds size720
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16088.4165.1prot_E-fasciculatus_F_contig16088.4165.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16088 15..2563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928075.6986878-CDS-E-fasciculatus_F_contig16088:14..1831622928075.6986878-CDS-E-fasciculatus_F_contig16088:14..183Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16088 15..183 +
1695995813.1773875-CDS-E-fasciculatus_F_contig16088:14..1831695995813.1773875-CDS-E-fasciculatus_F_contig16088:14..183Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16088 15..183 +
1622928075.713033-CDS-E-fasciculatus_F_contig16088:910..10691622928075.713033-CDS-E-fasciculatus_F_contig16088:910..1069Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16088 911..1069 +
1695995813.190766-CDS-E-fasciculatus_F_contig16088:910..10691695995813.190766-CDS-E-fasciculatus_F_contig16088:910..1069Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16088 911..1069 +
1622928075.7235925-CDS-E-fasciculatus_F_contig16088:1323..14781622928075.7235925-CDS-E-fasciculatus_F_contig16088:1323..1478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16088 1324..1478 +
1695995813.2008827-CDS-E-fasciculatus_F_contig16088:1323..14781695995813.2008827-CDS-E-fasciculatus_F_contig16088:1323..1478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16088 1324..1478 +
1622928075.734776-CDS-E-fasciculatus_F_contig16088:1846..19091622928075.734776-CDS-E-fasciculatus_F_contig16088:1846..1909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16088 1847..1909 +
1695995813.2118633-CDS-E-fasciculatus_F_contig16088:1846..19091695995813.2118633-CDS-E-fasciculatus_F_contig16088:1846..1909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16088 1847..1909 +
1622928075.7488916-CDS-E-fasciculatus_F_contig16088:2389..25631622928075.7488916-CDS-E-fasciculatus_F_contig16088:2389..2563Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16088 2390..2563 +
1695995813.2280855-CDS-E-fasciculatus_F_contig16088:2389..25631695995813.2280855-CDS-E-fasciculatus_F_contig16088:2389..2563Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16088 2390..2563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16088.4165.1

>prot_E-fasciculatus_F_contig16088.4165.1 ID=prot_E-fasciculatus_F_contig16088.4165.1|Name=mRNA_E-fasciculatus_F_contig16088.4165.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=240bp
SQSFGWQWAPLLDTLKVSKNKRNRFWPVGVVSGKLLAATLKGGEEHPAAY
PRPVITAVPLTALCAQSQDGEEMSKFEKSFPAMEARARQRKFNLDHGLVM
GDDVSAEPEAEMEGELMAQQAALDTMVVKRIQEACAAEKSERAMDLSSLL
HLEKSYSIAIKVANHHGLTSLAAGMDDAMVAKFQGPENEDAFDEDEGFEA
GEGGLARGGGGAAGGVRGGGGMDEEQNLGPLDRARLEQA*
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mRNA from alignment at E-fasciculatus_F_contig16088:15..2563+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16088.4165.1 ID=mRNA_E-fasciculatus_F_contig16088.4165.1|Name=mRNA_E-fasciculatus_F_contig16088.4165.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2549bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16088:15..2563+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGCAGTCCTTCGGATGGCAGTGGGCGCCCCTCCTCGACACCCTCAAGGT GTCCAAGAACAAGAGGAACCGCTTCTGGCCGGTGGGGGTGGTGTCCGGCA AGCTTCTCGCGGCCACTCTCAAGGGCGGAGAGGAACACCCCGCCGCCTAC CCTCGACCCGTCATCACAGGTGACCGAGTTTCGTTTTGTTTTTTTCGTGA ACACAACTAGACACGAATCCATCTCGAGCCATAGATTGAAAAAGGGTTTG GTAATCACTTCATAGCGTATATAGGGGAGTGTTCCTGTGCTTCTACATGC CGCGCACGTTGTGTGCGGCGCAATAGAAGAGTAGAAGAAGTGTTGACCTA AAGTGTTTACCTAACAGTAGTACCCGGGACGTGGCGCCCCGAGCCTCAAA AGGGAGGAGGGCATCGGCACGATACTGTAGATGAGAGAAAGAACGACACC GCCATTTGCTGCTCTTTTTCCCGATGTGAAAAGAATAGACACCGATCACT GGTATAACTCAGTGTGTATGGGCTTGAACAGACTCAAAAAAGCCCAGATT CCAGCAGGTTTCCGTTCATTGCTAGCGACATCTATTTGTTGGGGCGCGTG TGAGTGATACGGCAGCAGAGGCAATCGAGTTCAGGCCGTCCTTGTTATCT TCATGCACTGACTGTATTTTATTGTCCCACCCTTTTCATGGGTACAGACG AAACGAAACGTAATACCATCATATATTGAACGAAGCATCTACTTCACCGC AGAAGTTTCACATGGCTACCTTTTTTTTCGTAGTGCGTCTGCTGGAACTG CAGTAAATTTCACATGGCATCCTTTTTTCTCGTTGTTGTCTCTACTGCTG CTGCTGCTGCTGCTGTTACTTCTGCTGCTGCTCGCGCGCGATTCAGCGGT GCCCCTGACGGCCCTCTGCGCCCAGTCACAGGACGGCGAGGAGATGTCCA AGTTCGAGAAGTCGTTCCCGGCGATGGAGGCTAGGGCTAGGCAAAGGAAG TTCAACCTCGACCATGGCCTCGTCATGGGGGATGACGTCTCCGCTGAGCC TGAGGGTGAGTCAAGCAGGTTGGACCATGGGGGGTGACAGACAGAATGAG CGCGTGCGCGCGGGGGGGGTGATGATATCTCCGCTGAGCCTGACGGTAAG CCAGCCCTGTTGGAGCTGTGGGGCGGGGGCGTACGAGTGGTTTGCGTGCG TTAGTTGTTAGACTATTGAAAATGGGTGGTCAAAATGTTTGACCTGAAGA ACGATCACGTTGTCTTCTCGCCTCACCCACCCCCCAACCGACGGGACCCC CCCCGAAAGCAGAGATGGAGGGAGAGCTGATGGCGCAGCAGGCCGCGCTG GACACGATGGTTGTGAAGCGGATCCAGGAGGCCTGCGCGGCGGAGAAGTC GGAGCGTGCGATGGACCTGTCCTCTCTCCTGCACCTCGAGAAGTCCTACT CGATCGCGATCAAGGTGACCGATTAGAGGAGAAGCATCGTGTTGCTGTTT GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTCTCCACATAAAAC AAACCCTTCCGGTCTCCGCGCGGTAGCTTCTAATATCCGTAACTGGTCTA CGCTCGCTCCTTCTGTGGCCACAGGCCAACCAATTCCCGAAAAGGAAAAA ATATTGATGTAAAGAAATAGTTTTTTATGTTGATTCATGCGCAAGATAAG AACAAATTGCTAGAAGCACACACACACATGCTGCTATATAGGAAGTACAC CACGTAAGGTCCTTTCTCCTAACATTGATTCCTCTTGTACCCAAATTTGT TCACGGCGACGACGACGACGACGATTACTCAGGTGGCCAACCACCACGGA CTAACTTCCTTGGCGGCTGGCATGGACGACGCCATGGTGGCGAAGGTGAC GAACTTGAACATGAAAATAGAACCATCGCAGACAAACGAAACGAAAGGCG GAGATCTACTCTAAGCGTAGATAGTCCCCACCGTTTTTGCTGTTTTTTTA CGGAGATATACGTTGTCGTATGCATAGCTCCCCGTTATTGCCCATGTCTC GGAAGAAAGCTACAAGAAATAGCAACGTTACAATTTCCTTCTCACCTTTC AAAGAAATACAGGTGGAAACGCACAGAGGTACGCTATCCTAACCCCCAGT TTGTTGGGCGACTTTTCCCATCTTTCATGTCTCCTTAGAACCCCTTCCCC ACAATCCCCACACCAAAGAAAAGCATCAAATCTTCCTAATGCACACACGC CTTACAAGCTTTCGTTTGCGACTGCATCTCTCGTAGATCAACCCTACTCA ATCCTACCCTAACATCTAGCTCGCCTCCCGTCCCTCCCGCCTGACGTTGG GTTTGAATTCATCAACTCTTCACAGTTCCAGGGTCCTGAAAATGAAGATG CCTTCGATGAAGACGAAGGGTTCGAAGCTGGTGAAGGGGGATTGGCCAGG GGCGGCGGCGGCGCTGCGGGCGGAGTTCGGGGGGGCGGCGGGATGGACGA GGAACAGAACCTTGGTCCTCTAGACCGAGCGAGGCTCGAGCAAGCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16088:15..2563+

>mRNA_E-fasciculatus_F_contig16088.4165.1 ID=mRNA_E-fasciculatus_F_contig16088.4165.1|Name=mRNA_E-fasciculatus_F_contig16088.4165.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1440bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16088:15..2563+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGCAGTCCTTCGGATGGCAGTGGGCGCCCCTCCTCGACACCCTCAAGGT
GTCCAAGAACAAGAGGAACCGCTTCTGGCCGGTGGGGGTGGTGTCCGGCA
AGCTTCTCGCGGCCACTCTCAAGGGCGGAGAGGAACACCCCGCCGCCTAC
CCTCGACCCGTCATCACAGTCGCAGTCCTTCGGATGGCAGTGGGCGCCCC
TCCTCGACACCCTCAAGGTGTCCAAGAACAAGAGGAACCGCTTCTGGCCG
GTGGGGGTGGTGTCCGGCAAGCTTCTCGCGGCCACTCTCAAGGGCGGAGA
GGAACACCCCGCCGCCTACCCTCGACCCGTCATCACAGCGGTGCCCCTGA
CGGCCCTCTGCGCCCAGTCACAGGACGGCGAGGAGATGTCCAAGTTCGAG
AAGTCGTTCCCGGCGATGGAGGCTAGGGCTAGGCAAAGGAAGTTCAACCT
CGACCATGGCCTCGTCATGGGGGATGACGTCTCCGCTGAGCCTGAGGCGG
TGCCCCTGACGGCCCTCTGCGCCCAGTCACAGGACGGCGAGGAGATGTCC
AAGTTCGAGAAGTCGTTCCCGGCGATGGAGGCTAGGGCTAGGCAAAGGAA
GTTCAACCTCGACCATGGCCTCGTCATGGGGGATGACGTCTCCGCTGAGC
CTGAGGCAGAGATGGAGGGAGAGCTGATGGCGCAGCAGGCCGCGCTGGAC
ACGATGGTTGTGAAGCGGATCCAGGAGGCCTGCGCGGCGGAGAAGTCGGA
GCGTGCGATGGACCTGTCCTCTCTCCTGCACCTCGAGAAGTCCTACTCGA
TCGCGATCAAGCAGAGATGGAGGGAGAGCTGATGGCGCAGCAGGCCGCGC
TGGACACGATGGTTGTGAAGCGGATCCAGGAGGCCTGCGCGGCGGAGAAG
TCGGAGCGTGCGATGGACCTGTCCTCTCTCCTGCACCTCGAGAAGTCCTA
CTCGATCGCGATCAAGGTGGCCAACCACCACGGACTAACTTCCTTGGCGG
CTGGCATGGACGACGCCATGGTGGCGAAGGTGGCCAACCACCACGGACTA
ACTTCCTTGGCGGCTGGCATGGACGACGCCATGGTGGCGAAGTTCCAGGG
TCCTGAAAATGAAGATGCCTTCGATGAAGACGAAGGGTTCGAAGCTGGTG
AAGGGGGATTGGCCAGGGGCGGCGGCGGCGCTGCGGGCGGAGTTCGGGGG
GGCGGCGGGATGGACGAGGAACAGAACCTTGGTCCTCTAGACCGAGCGAG
GCTCGAGCAAGCGTGATTCCAGGGTCCTGAAAATGAAGATGCCTTCGATG
AAGACGAAGGGTTCGAAGCTGGTGAAGGGGGATTGGCCAGGGGCGGCGGC
GGCGCTGCGGGCGGAGTTCGGGGGGGCGGCGGGATGGACGAGGAACAGAA
CCTTGGTCCTCTAGACCGAGCGAGGCTCGAGCAAGCGTGA
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