mRNA_E-fasciculatus_F_contig16086.4163.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16086.4163.1
Unique NamemRNA_E-fasciculatus_F_contig16086.4163.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16086.4163.1 vs. uniprot
Match: D7FTM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM5_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 4.270e-39
Identity = 114/211 (54.03%), Postives = 120/211 (56.87%), Query Frame = 3 
Query:  240 GLEMRDTSRQQAKGGQQWDEEEGEA------GTFVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPPGMMAHERGVRVWSGAGRAYGSGGGERWIGFAGSPRNRR--LRAAWDXXXXXXXXXXXXXXX-LLGNNNDSPEREPLAAGSPSAMESRRRKGYRNGSRSRSRSTSPEVFGVAKQDDSS-GGEESATFFKEEDR 842
            GLEMRDTS Q  KGG+  DEEEG        GTFVG+                                      SLP G+MAHERGVRVWSGAGRAYGSGGGERWIGFAGSPRN R  +  AWD                +LGN+N S EREPLAA SPSAMES RRK            TSPEVF VAKQDDSS GGEESATFFKEEDR
Sbjct:  484 GLEMRDTSGQ-PKGGRWEDEEEGXXXXXXXXGTFVGSAGGAGRHRAGAENIPPSSPSSSTS--------------SLPQGIMAHERGVRVWSGAGRAYGSGGGERWIGFAGSPRNSRPPVPTAWDDDRGTTTTAAGAGEDEVLGNSNGSSEREPLAASSPSAMESGRRKXXXXXXXXXXXXTSPEVFRVAKQDDSSSGGEESATFFKEEDR 679
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16086.4163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTM5_ECTSI4.270e-3954.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16086contigE-fasciculatus_F_contig16086:223..1484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1262
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16086.4163.1prot_E-fasciculatus_F_contig16086.4163.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16086 471..1067 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928075.5126545-UTR-E-fasciculatus_F_contig16086:222..4701622928075.5126545-UTR-E-fasciculatus_F_contig16086:222..470Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16086 223..470 +
1695995813.097484-UTR-E-fasciculatus_F_contig16086:222..4701695995813.097484-UTR-E-fasciculatus_F_contig16086:222..470Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16086 223..470 +
1622928075.5512562-UTR-E-fasciculatus_F_contig16086:1067..14841622928075.5512562-UTR-E-fasciculatus_F_contig16086:1067..1484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16086 1068..1484 +
1695995813.1215923-UTR-E-fasciculatus_F_contig16086:1067..14841695995813.1215923-UTR-E-fasciculatus_F_contig16086:1067..1484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16086 1068..1484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928075.5356593-CDS-E-fasciculatus_F_contig16086:470..10671622928075.5356593-CDS-E-fasciculatus_F_contig16086:470..1067Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16086 471..1067 +
1695995813.108017-CDS-E-fasciculatus_F_contig16086:470..10671695995813.108017-CDS-E-fasciculatus_F_contig16086:470..1067Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16086 471..1067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16086.4163.1

>prot_E-fasciculatus_F_contig16086.4163.1 ID=prot_E-fasciculatus_F_contig16086.4163.1|Name=mRNA_E-fasciculatus_F_contig16086.4163.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=199bp
MRDTSRQQAKGGQQWDEEEGEAGTFVGTAASGAAAAAAAAAAAGRHGGAA
AGADNIPPASPSSSTSSLPPGMMAHERGVRVWSGAGRAYGSGGGERWIGF
AGSPRNRRLRAAWDDDGGTTAAGGEGQDELLGNNNDSPEREPLAAGSPSA
MESRRRKGYRNGSRSRSRSTSPEVFGVAKQDDSSGGEESATFFKEEDR*
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mRNA from alignment at E-fasciculatus_F_contig16086:223..1484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16086.4163.1 ID=mRNA_E-fasciculatus_F_contig16086.4163.1|Name=mRNA_E-fasciculatus_F_contig16086.4163.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1262bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16086:223..1484+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGTCCCGGCGGCGACGCGGATTCTTCGGGGGCGGGGGGGGGCGGCGGT
GGCAGCGACGGGCTGCCGCGGCGGCAGCGACGATCGCCGAAGCGCGGCGG
CGGCACGTTCCTCAACGGGGCCCCGCGAGATCGCAACGATGACGGGGGGG
GTGCCGGGGTCTCCAGGCGAAGGCAAGGGCTCACCAGAGGAGGAGGAGGA
CGAGGAGGACGAGGAGGGGCAACGGGGGAGGAGGAGAAGGGGTTGGAGAT
GCGGGACACATCGAGACAGCAGGCGAAAGGAGGACAGCAGTGGGACGAGG
AGGAAGGAGAGGCTGGGACGTTTGTCGGGACCGCGGCGAGCGGTGCCGCC
GCTGCTGCTGCTGCTGCTGCTGCGGCTGGCCGGCACGGAGGAGCAGCAGC
AGGCGCCGATAACATCCCCCCGGCGTCGCCTTCGTCGTCGACGTCCTCCC
TGCCCCCGGGCATGATGGCCCACGAAAGGGGGGTCCGCGTGTGGAGTGGC
GCCGGCCGGGCGTATGGCAGTGGGGGCGGGGAGAGGTGGATAGGGTTTGC
CGGTTCTCCTCGAAATAGACGGCTACGGGCGGCGTGGGACGATGACGGGG
GTACTACCGCCGCCGGGGGGGAGGGGCAGGATGAGCTCCTGGGTAACAAC
AACGACAGTCCGGAACGTGAACCTCTGGCGGCTGGCTCGCCGTCGGCGAT
GGAGAGCCGCCGCAGAAAGGGCTATCGAAACGGGAGTAGAAGTAGAAGTA
GAAGCACCAGCCCCGAGGTTTTCGGTGTTGCGAAGCAGGACGATAGCAGT
GGGGGCGAGGAATCCGCGACGTTTTTCAAAGAGGAGGATCGGTAACAGGC
TTCGGGCGCGTTCCTTGTGACGCTGCTGGTGGGATTTTTTTTGCCGGCCA
CGCCAGTCCGGTAGTCCGCGGGCAGGCGTTGGCAATATAATAGTATTGTA
GGATGGTGCTGTGTGTATTTATATGTCGTTTTGGGTCCAACGCCTGGCTG
GGCAAGCTGTTGTCGTTTGTGTCGTTTTTTTATCCGACGCTTGGCTTGAC
GCGTTCATCACCTTGCGTGCGATTGGAAGGCTCGGTTCCTCCGTCAAATG
GATGTGTCGGGTTGACCACCCTATTCATAACACGGGTGTAGTACGCATCG
GTTTCAGTCGGCATCGCCTCCTGCGGGGGGGGGGGGTTCCAGTAGAACGA
AAGCCCTCCCGCAACGAGATTTGAATGAAAAGGCATATGTCGCGCCTGGC
AAGCGCGGACTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16086:223..1484+

>mRNA_E-fasciculatus_F_contig16086.4163.1 ID=mRNA_E-fasciculatus_F_contig16086.4163.1|Name=mRNA_E-fasciculatus_F_contig16086.4163.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1194bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16086:223..1484+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGGACACATCGAGACAGCAGGCGAAAGGAGGACAGCAGTGGGACGA
GGAGGAAGGAGAGGCTGGGACGTTTGTCGGGACCGCGGCGAGCGGTGCCG
CCGCTGCTGCTGCTGCTGCTGCTGCGGCTGGCCGGCACGGAGGAGCAGCA
GCAGGCGCCGATAACATCCCCCCGGCGTCGCCTTCGTCGTCGACGTCCTC
CCTGCCCCCGGGCATGATGGCCCACGAAAGGGGGGTCCGCGTGTGGAGTG
GCGCCGGCCGGGCGTATGGCAGTGGGGGCGGGGAGAGGTGGATAGGGTTT
GCCGGTTCTCCTCGAAATAGACGGCTACGGGCGGCGTGGGACGATGACGG
GGGTACTACCGCCGCCGGGGGGGAGGGGCAGGATGAGCTCCTGGGTAACA
ACAACGACAGTCCGGAACGTGAACCTCTGGCGGCTGGCTCGCCGTCGGCG
ATGGAGAGCCGCCGCAGAAAGGGCTATCGAAACGGGAGTAGAAGTAGAAG
TAGAAGCACCAGCCCCGAGGTTTTCGGTGTTGCGAAGCAGGACGATAGCA
GTGGGGGCGAGGAATCCGCGACGTTTTTCAAAGAGGAGGATCGGTAAATG
CGGGACACATCGAGACAGCAGGCGAAAGGAGGACAGCAGTGGGACGAGGA
GGAAGGAGAGGCTGGGACGTTTGTCGGGACCGCGGCGAGCGGTGCCGCCG
CTGCTGCTGCTGCTGCTGCTGCGGCTGGCCGGCACGGAGGAGCAGCAGCA
GGCGCCGATAACATCCCCCCGGCGTCGCCTTCGTCGTCGACGTCCTCCCT
GCCCCCGGGCATGATGGCCCACGAAAGGGGGGTCCGCGTGTGGAGTGGCG
CCGGCCGGGCGTATGGCAGTGGGGGCGGGGAGAGGTGGATAGGGTTTGCC
GGTTCTCCTCGAAATAGACGGCTACGGGCGGCGTGGGACGATGACGGGGG
TACTACCGCCGCCGGGGGGGAGGGGCAGGATGAGCTCCTGGGTAACAACA
ACGACAGTCCGGAACGTGAACCTCTGGCGGCTGGCTCGCCGTCGGCGATG
GAGAGCCGCCGCAGAAAGGGCTATCGAAACGGGAGTAGAAGTAGAAGTAG
AAGCACCAGCCCCGAGGTTTTCGGTGTTGCGAAGCAGGACGATAGCAGTG
GGGGCGAGGAATCCGCGACGTTTTTCAAAGAGGAGGATCGGTAA
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