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Homology
BLAST of mRNA_E-fasciculatus_F_contig1608.4161.1 vs. uniprot
Match: D7G486_ECTSI (Mitochondrial TOM complex subunit, Tom40 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G486_ECTSI) HSP 1 Score: 410 bits (1054), Expect = 5.990e-141 Identity = 212/224 (94.64%), Postives = 215/224 (95.98%), Query Frame = 1
Query: 1 QATLTVVGESETMVRASMDADCNVSMDAQAPLGMPGLAGKLTVHQGKNDVIQGTALYHGESICDTCSGQIALGTGPVEISYNQAVTPHLSVGGQGQFSSAQQAVGLLYGFKYNTPSWAVLGRLIGGGANVVTAQYLRRVVPGRVTLGAEYQAQLGAGSQMMVGAEFQLKQSKMSASVDSNGKVDSILELKCGTFPTLPVTLTMSSSLDHSEDKHTFGLALTCGQ 672
Q TLTVVGESETMVRASMDADCNVSMDA APLGMPGLAGKLTVHQGKNDVIQGTALYHG DTCSGQI+LGTGP EISYNQAVTPHLS+GGQGQFSSAQQAVGLLYGFKYNTPSWAVLGRLIGGGANVVTAQYLRRVVPGRVTLGAEYQAQLGAGSQMMVGAEFQLKQSKMSASVDSNGKVDS LELKCGTFPTLPVTLT+SSSLDHSEDK TFGLALTCGQ
Sbjct: 223 QGTLTVVGESETMVRASMDADCNVSMDAHAPLGMPGLAGKLTVHQGKNDVIQGTALYHG----DTCSGQISLGTGPTEISYNQAVTPHLSMGGQGQFSSAQQAVGLLYGFKYNTPSWAVLGRLIGGGANVVTAQYLRRVVPGRVTLGAEYQAQLGAGSQMMVGAEFQLKQSKMSASVDSNGKVDSTLELKCGTFPTLPVTLTISSSLDHSEDKQTFGLALTCGQ 442
BLAST of mRNA_E-fasciculatus_F_contig1608.4161.1 vs. uniprot
Match: A0A7S2BHQ8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHQ8_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.850e-14 Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 1
Query: 235 ISYNQAVTPHLSVGGQGQFSSAQQAVGLLYGFKYNTPSWAVLGRLIGG-----GANVVT----AQYLRRVVPGRVTLGAEYQAQLGAG---SQMMVGAEFQLKQSKMSASVDSNGKVDSILELKCGTFPTLPVTLTMSSSLDHSEDKHTFGL---ALTCG 669
++Y Q++TP S+GG+ + KYNT W G+ G+ T AQY R+VVPGR+ LG E +G G +Q+M GAEFQLKQSK++ SVD +GK+ + ++ K P + VTL+ + + G+ A CG
Sbjct: 260 LAYTQSITPRFSMGGETTLNINSLQTTSAACAKYNTKDWCATGKFSAAPDRQPGSEATTTEINAQYQRKVVPGRINLGTELSLAMGPGGLHNQVMFGAEFQLKQSKVATSVDGSGKICTTIDSKID--PHMSVTLSAEMAYSAGQPDQATGVPTDAFRCG 417
BLAST of mRNA_E-fasciculatus_F_contig1608.4161.1 vs. uniprot
Match: A0A7S1GMA5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMA5_CYCTE) HSP 1 Score: 80.1 bits (196), Expect = 5.340e-14 Identity = 66/219 (30.14%), Postives = 101/219 (46.12%), Query Frame = 1
Query: 82 AQAPLGMPGLAGKLTVHQGKNDVIQGTALYHGESICDTCSGQIALGTGPVEISYNQAVTPHLSVGGQGQFSSAQQAVGLLYGFKYNTPSWA------------------------VLGRLIGGGANVVTAQYLRRVVPGRVTLGAEYQAQLGA--GSQMMVGAEFQLKQSKMSASVDSNGKVDSILELKCGTFPTLPVTLTMSSSLDHSEDKHTFGLAL 660
A+ +G+ G A +G ND +G + ALG G I+Y Q++TP L++GG+G + SA Q++ Y +Y P+ + + V+ Y R V P RV LGAE Q + +Q++VGAEF+L +SK+SA VD +G+V S++E K G TL ++ +D +DK FG L
Sbjct: 148 AKIQMGVSGAA------EGHNDQCMTEVDLNGMTWSANLKYGSALGGGLYGINYFQSITPRLAMGGEGIYISANQSLMSNYTLRYTMPAKSGDDADDNDAADKKGVVVSSERASSTMVASYNSQQGAVSLNYKRNVTPNRVALGAELQFSPFSPQSAQVVVGAEFKLTRSKVSACVDGSGRVQSLVEAKLGRIGA--PTLQLAGEMDFGQDKMKFGYGL 358
BLAST of mRNA_E-fasciculatus_F_contig1608.4161.1 vs. uniprot
Match: A0A836CIJ7_9STRA (Eukaryotic porin-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIJ7_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 2.810e-13 Identity = 74/225 (32.89%), Postives = 108/225 (48.00%), Query Frame = 1
Query: 7 TLTVVGESETMV---RASMDADCNVSMDAQAPLGMPGLAGKLTVHQGKNDVIQGTA-LYHGESICDTCSGQIALGTGPVEISYNQAVTPHLSVGGQGQFSSAQQAVGLLYGFKYNTPSWAVLGRLIGGGANVVTAQYLRRVVPGRVTLGAEYQAQ--LGAGSQMMVGAEFQLKQSKMSASVDSNGKVDSILELKCGTFPTLPV-TLTMSSSLDHSEDKHTFGLAL 660
T TVV E +T V R S D D +D + + + GK+ G D IQ TA + S C Q+ G G S+NQA+T L+ G + + + G +Y T W G ++ G ++ QY R V RV LGAE S + VGAEF LKQSK+ +V+ +G VD +E++ LP+ +++ + L+H EDKH FG +
Sbjct: 166 TSTVVSEDQTRVLMGRMSKDGD----LDGRVFCPIGNILGKVQFTLGAQDTIQATAEMKDSSSAC-----QVTAGLGTFGFSFNQALTARLTAGMDCTYHAQMGDAPISVGGQYQTRDWT--GNVLYG-PGMMQLQYARHVNE-RVQLGAELALNPLRPQESAVAVGAEFNLKQSKLHFAVNGSGTVDGNIEVRF-----LPMASVSFAGQLNHVEDKHRFGFGM 372
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 416.8 |
| Seed ortholog evalue | 6.6e-114 |
| Seed eggNOG ortholog | 2880.D7G486 |
| Preferred name | TOMM40L |
| KEGG ko | ko:K11518 |
| KEGG TC | 3.A.8.1 |
| KEGG Pathway | ko05014,map05014 |
| GOs | GO:0001666,GO:0003674,GO:0005048,GO:0005215,GO:0005216,GO:0005261,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005742,GO:0005743,GO:0005758,GO:0005773,GO:0005774,GO:0005829,GO:0006605,GO:0006626,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008324,GO:0008565,GO:0009628,GO:0009987,GO:0010941,GO:0010942,GO:0015031,GO:0015075,GO:0015267,GO:0015318,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0019867,GO:0022803,GO:0022804,GO:0022838,GO:0022857,GO:0022884,GO:0022890,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034220,GO:0034613,GO:0036293,GO:0036294,GO:0042221,GO:0042277,GO:0042719,GO:0042886,GO:0042887,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051204,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070482,GO:0070585,GO:0070678,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098573,GO:0098588,GO:0098655,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1904680,GO:1990351,GO:1990542 |
| EggNOG free text desc. | protein import into mitochondrial matrix |
| EggNOG OGs | KOG3296@1,KOG3296@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko02000,ko03029 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Mitochondrial TOM complex subunit, Tom40 homolog |
| Ec32 ortholog | Ec-02_001720.1 |
| Exons | 5 |
| Model size | 675 |
| Cds size | 675 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1608.4161.1 >prot_E-fasciculatus_F_contig1608.4161.1 ID=prot_E-fasciculatus_F_contig1608.4161.1|Name=mRNA_E-fasciculatus_F_contig1608.4161.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=225bp
QATLTVVGESETMVRASMDADCNVSMDAQAPLGMPGLAGKLTVHQGKNDV
IQGTALYHGESICDTCSGQIALGTGPVEISYNQAVTPHLSVGGQGQFSSA
QQAVGLLYGFKYNTPSWAVLGRLIGGGANVVTAQYLRRVVPGRVTLGAEY
QAQLGAGSQMMVGAEFQLKQSKMSASVDSNGKVDSILELKCGTFPTLPVT
LTMSSSLDHSEDKHTFGLALTCGQ* back to topmRNA from alignment at E-fasciculatus_F_contig1608:13241..17003- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1608.4161.1 ID=mRNA_E-fasciculatus_F_contig1608.4161.1|Name=mRNA_E-fasciculatus_F_contig1608.4161.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3763bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1608:13241..17003- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCCACCCTTACCGTGGTGGGGGAGAGCGAGACGATGGTAAGAGCCTC
TATGGACGCCGACTGCAACGTTAGCATGGACGCCCAGGCGCCCCTGGGCA
TGCCGGGGCTGGCCGGAAAGCTGACGGTGCACCAGGGGAAGAACGACGTT
ATCCAGGGGACCGCTCTCTATCACGGCGAGTCCATTTGTTGGAGGTTGTG
TTAGTTTCGGGGGGTGGAAGTGCGGGTGGGCTTTGCAGCGCCTGGCGTCG
GCTGTCATGGTAGTGGTAGTGGTACCGCACATCCTTGACGTGGTGGTACA
GGAGTAGGCGCGTGGGACTTGGGAGGCGGCTTTGCCGTGTTGCCTACGGG
CACTGGCGGTCCAGGAGTTTGAAGAACACGTCTGTGTGGATGGAAGACGT
GCTGCAATCCTACAAAGGCAGGTCAGAGGCGGCAACGGAAAAAGCCGCCT
CGCTAAGCAGACCCTTTGCACTTTCCCCGATGCCCTTTCGCTTTGATGGC
CTGCAGGCCGGTCACATTCCAACACAATGTGTGTACGACTCTATGTTTGG
TTACTCTTGGCCTATCCCCGTCCAAACAAAGCGGAGCAGATAGGACACGG
CACATGTAATTCCGTAAAGTAAGATCAGCAAATAAGGCACGGTATGAATC
CGTCATTAAAGATATCGTAAACACGTTTCGCCAACCCGGATACAGATGGT
GTTGCCATTTGAAGCATGAGCTCTGCGTCGAGATGTGTACCTGTGGGCAA
TGGCCGAACGACTTGAGGAAAGCAACAAATGATCCCTCCCACTTCCCCAA
GGAACGATTGGCCTATCGGTGATCGGCCCTGGGGGAACCATGCCCCGTCC
TCTCGAGGACGGGTGGTCAATGGTCTACCAACTGAACATGAGTTCGCCCA
CCGCCCCCCAACCCCCTCCAGGTGATACTTGCTCGGGACAGATTGCCCTT
GGTACCGGGCCGGTGGAGATCTCGTACAACCAGGCCGTCACTCCGCACCT
GTCTGTGGGAGGCCAGGGGCAGTTCAGCTCCGCGCAACAGGCGGTCGGGC
TCCTGTACGGCTTCAAGTACAACACCCCGAGGTGCCCAACGCTATATCAT
ATCAAGGCGGAATGGTGGTCCTCGTGTGCCACGGACAGCAGTCGTTCTTT
TGGTGCTGCTGCTGCTGCTGCTGCTGCTGGCTTTTTTGTGTGGTGTTATC
GGTGTTGATGTCAGCTGTGCTTGCGCTTGTTAAAGTTGTGGTTCCTTTCT
ATGAATGAGGTGCTCATGCTTTCTATGCAGGTTTCACCACAACCAAGCCC
GCCTGTTTCCTACCTCCTACCTGACGAAGACAGCAGTTTGCCCCGATCTC
ACCTGTGTAGTCCTGCTTCGGTTGCTCGAGTCCTATACCCCCATCTGCCT
ACCGGTGCTGAAACCAAAGCGGAATTTCGCAAGGAAGTGGCAGATGCCAC
GAACCCCGGGCACGAACAGGGTCTACGGGCACGCCCTTGGTTGAACTCGC
TGAGAAACAGCGGCTGCCTTCTTACACAAACATGGCCTCGAAATGTCCAT
GAACTTGGTGTGTAGGGGTCCGGGTACGTTGCACGATTGTCATGACACCC
CCCCCCCTGCTGCGACTGTAACGACCCTATGCCGGGTTATCCATCGTATC
CCGCCCGGTTGTGCCTCATGCCTCCACCCACGCGCGGCTTTCCGCTATTT
GCCGTCCGTTGTACGATGTTCTTGGCGGTGTGTCAACAACTTACCACTTA
CTTCAGTTGGGCAGTGCTCGGGAGGCTTATCGGTGGAGGCGCTAACGTGG
TGACCGCACAGTACCTGAGGAGGGTGGTGCCCGGCAGAGTCACTCTCGGC
GCCGAGTACCAGGCGCAGCTGGGTGCCGGCAGCCAGGTAAAGTCAGTCAC
CCTAGCCATGGATATTTAGCAGCAGGACATTTGGAACGGGGGCAGAAATG
CTGTTAAGTGTTGTGTACTCCCCAGAGCAGAGGCCAATCTCGCTGTTGTC
GTCGCGGTCATCGTTGGCTATTAATGATGGTGAATGATGAAGGCGAGCAG
TGTTCTCGTCACGTTTTGTCCAACATGTCAAGGGCTGGTGGTGATGCTTG
TGGTTTGAACGTCAATTTTTTTCGCAGAGGGTGGGCGAGTGACAACCTGG
GGGGGGCGATGGTGATGATGGTGATGATGACCAAATCCCTACTCTGGCGC
GGAACGAGTACCCTTTGGTTTGAGCCCTCCGGGCTGTGTTGCTTCAGTTC
TCAGAACTGCTATTTTCCTTTCTTCGCTGTTTTTATGCACGTTTGAGCTT
CTCTTATGGCCGAGCTGCGACAAGCAATCGGCGCATGTATCGCAACTGGT
TGTTGGCACCATAGCGCTGGACCAGGAAACGTACAGCAAGCTTTATTTTG
CTCGCCTGCCGCTGTTCTGAAGTCGTCCCGGTGTGTTGGTGTGTGTACAC
CGCTGTGCGGAGTTCGCCGTGTTGTGTAGACCTTCCACTCGTCGTTCGAC
CTGCGTATTCAAAGCAGCCGCCGCCGCCGCCGCCGCTGCTGCTGCTGCTG
CTGCTGCTGCTGTTAATTTTTCTGGACGGTGAACCGTTAATCTTTCGAGT
TGGTCGTACCACCGTTCGTGACACCATCGTGCTTTTGCGGCACCTGCTCG
TGTCGGTGCCTTTTGTTTTACATCGACGCGCCTTTGCCTGCCGCCGGTTT
GCCCTTCTCCGTGCTGCCTCGACTTCCCCCTTTGGGCTCTTGGGCGTCAG
ATGATGGTCGGAGCCGAGTTTCAACTCAAGCAGAGCAAGATGTCTGCCAG
CGTTGACAGCAACGGCAAGGTCGACTCCATCCTCGAGGTACGTTGCATCG
GGGCTCATTACTGATGCTTCTGCCGTTGCTGCATGTCCGAACAGAAGCCA
ACACTCCACTCCACCAAGAGGCCCTCAACCCAAAATGTTCAGACCCTAGC
GAGGAATTTTCGAAGCCTTGCTATAGTGGGTGGGGTTGTCGAGAGAGTGA
GTGCATGGGGGGCTTTGGCTTTGGGCTGACGCGACGCTATTAATAGATTC
AACGCTTGTCTTGTCACGGCGAGGCAGTTGGACCTGTCATAGATTTCGTC
GTTGTGTGGATCCTGTCAAGCACTCATGGGGGGGGGGGGGGGGGGGGGGG
GCGTAAGGCTTCGGCTGCGTTGTTTGACAACTACGTTGACTACATGCGCT
CGCTGCACGAAGCGCCGACTGTCTTGCGTCTCGCGGACGTTCTGTTCTGT
TACACTTTGCCGTCGCTGTAAGCAAGGGGCTGCCTGCTCAAAAGTCTTGT
TTCTGTAGTTCCTTCGTCTAGCCGTGCTGTCCAGAAAAAGAATCACAGAG
CGGAGTGTCCAGGGTACTGTAGCCGTGTCGTTCACGACCAAAGCAGTAAA
GGCAGGCGCGTTACTTTGGACCCGGATGGAATGCTGGCATGGGAGCGGAA
CATTTGATGATTAACCACCCACAGCTCCCTGAATACGAGTTAGTCCCCTG
CCCTGCGTTGCTACGCCATTCCACGTTGTCATGTTTTCTGCCGGTGACGC
TGACACCATGACCCTTGATTCCTTTTTTCCGGCGCCAACCACGCTCAAAC
TAGCCTCCTCGCCCTACCACGCATGCGCCTTCCTTCCGCTCTTTTCCCGC
AGCTCAAGTGCGGGACATTCCCGACTTTGCCCGTCACGCTCACCATGTCG
TCATCGTTGGATCACTCTGAGGACAAGCACACGTTTGGGTTGGCCCTCAC
CTGCGGACAGTAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1608:13241..17003- >mRNA_E-fasciculatus_F_contig1608.4161.1 ID=mRNA_E-fasciculatus_F_contig1608.4161.1|Name=mRNA_E-fasciculatus_F_contig1608.4161.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1350bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1608:13241..17003- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCCACCCTTACCGTGGTGGGGGAGAGCGAGACGATGGTAAGAGCCTC
TATGGACGCCGACTGCAACGTTAGCATGGACGCCCAGGCGCCCCTGGGCA
TGCCGGGGCTGGCCGGAAAGCTGACGGTGCACCAGGGGAAGAACGACGTT
ATCCAGGGGACCGCTCTCTATCACGGCGAGTCCATTTCAGGCCACCCTTA
CCGTGGTGGGGGAGAGCGAGACGATGGTAAGAGCCTCTATGGACGCCGAC
TGCAACGTTAGCATGGACGCCCAGGCGCCCCTGGGCATGCCGGGGCTGGC
CGGAAAGCTGACGGTGCACCAGGGGAAGAACGACGTTATCCAGGGGACCG
CTCTCTATCACGGCGAGTCCATTTGTGATACTTGCTCGGGACAGATTGCC
CTTGGTACCGGGCCGGTGGAGATCTCGTACAACCAGGCCGTCACTCCGCA
CCTGTCTGTGGGAGGCCAGGGGCAGTTCAGCTCCGCGCAACAGGCGGTCG
GGCTCCTGTACGGCTTCAAGTACAACACCCCGAGGTGATACTTGCTCGGG
ACAGATTGCCCTTGGTACCGGGCCGGTGGAGATCTCGTACAACCAGGCCG
TCACTCCGCACCTGTCTGTGGGAGGCCAGGGGCAGTTCAGCTCCGCGCAA
CAGGCGGTCGGGCTCCTGTACGGCTTCAAGTACAACACCCCGAGTTGGGC
AGTGCTCGGGAGGCTTATCGGTGGAGGCGCTAACGTGGTGACCGCACAGT
ACCTGAGGAGGGTGGTGCCCGGCAGAGTCACTCTCGGCGCCGAGTACCAG
GCGCAGCTGGGTGCCGGCAGCCAGTTGGGCAGTGCTCGGGAGGCTTATCG
GTGGAGGCGCTAACGTGGTGACCGCACAGTACCTGAGGAGGGTGGTGCCC
GGCAGAGTCACTCTCGGCGCCGAGTACCAGGCGCAGCTGGGTGCCGGCAG
CCAGATGATGGTCGGAGCCGAGTTTCAACTCAAGCAGAGCAAGATGTCTG
CCAGCGTTGACAGCAACGGCAAGGTCGACTCCATCCTCGAGATGATGGTC
GGAGCCGAGTTTCAACTCAAGCAGAGCAAGATGTCTGCCAGCGTTGACAG
CAACGGCAAGGTCGACTCCATCCTCGAGCTCAAGTGCGGGACATTCCCGA
CTTTGCCCGTCACGCTCACCATGTCGTCATCGTTGGATCACTCTGAGGAC
AAGCACACGTTTGGGTTGGCCCTCACCTGCGGACAGTAGCTCAAGTGCGG
GACATTCCCGACTTTGCCCGTCACGCTCACCATGTCGTCATCGTTGGATC
ACTCTGAGGACAAGCACACGTTTGGGTTGGCCCTCACCTGCGGACAGTAG back to top
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