mRNA_E-fasciculatus_F_contig1608.4160.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1608.4160.1
Unique NamemRNA_E-fasciculatus_F_contig1608.4160.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Match: D7G487_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G487_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 4.640e-32
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSIFQVLK 177
            MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSS+FQVLK
Sbjct:    1 MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSLFQVLK 59
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Match: D0MTV7_PHYIT (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=D0MTV7_PHYIT)

HSP 1 Score: 60.8 bits (146), Expect = 5.120e-11
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   13 KTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSIFQVLK 177
            K RL SEKHL N+T+RG V + + E+K  GY+VGP L+ FFLFV++GSS+ Q+L+
Sbjct:    6 KMRLRSEKHLANITKRGQVSQPQKEDK--GYSVGPILMGFFLFVLVGSSVIQILR 58
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Match: K3WKY6_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WKY6_GLOUD)

HSP 1 Score: 60.5 bits (145), Expect = 7.270e-11
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   13 KTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSIFQVLK 177
            K RL SEKHL N+T+RG V K   E  ++GY VGP LL FF+FV++GSS+ Q+L+
Sbjct:    6 KMRLRSEKHLANITKRGMVSKP--EKNESGYGVGPVLLGFFVFVLVGSSVIQILR 58
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Match: A0A3M6VCY0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCY0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.470e-10
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   13 KTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSIFQVLK 177
            K RL SEKHL N+T+RG V + + E K  GY+VGP LL FF+FV++GSSI Q+L+
Sbjct:    6 KIRLRSEKHLANITKRGLVSQPEKEEK--GYSVGPLLLGFFVFVLVGSSIIQILR 58
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Match: A0A2D4BJU9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJU9_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 3.640e-10
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   19 RLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSIFQVLK 177
            RL SEKHL N+T+RG V +   + K++GY VGP LL FF+FV++GSS+ Q+L+
Sbjct:    2 RLRSEKHLANITKRGLVSQP--DKKESGYTVGPVLLGFFIFVLVGSSVIQILR 52
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Match: T2M9E3_HYDVU (Stress-associated endoplasmic reticulum protein 2 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M9E3_HYDVU)

HSP 1 Score: 58.2 bits (139), Expect = 6.110e-10
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   19 RLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSIFQVLK 177
            R+A+EKH QNVT RG+VPK  +  K   YAVGP LL  FLFVV GS++FQ+++
Sbjct:    8 RVANEKHSQNVTMRGNVPK-TMNPKDEKYAVGPYLLGLFLFVVCGSAVFQIIQ 59
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Match: A0A4D9DDX7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDX7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 9.330e-10
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    7 SRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSIFQVLK 177
            SR TRL SEK  +NVT+RG+VP GK   ++    V P LL FF+FVV+GS+ FQ+++
Sbjct:    4 SRATRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIR 60
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Match: A0A0N7L5X2_PLAHL (Stress-associated endoplasmic reticulum protein 2-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5X2_PLAHL)

HSP 1 Score: 57.0 bits (136), Expect = 1.710e-9
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   19 RLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSIFQVLK 177
            RL SEKHL N+T+RG V + K E+K  GY+VGP L  FF+FV++GS++ Q+L+
Sbjct:    8 RLRSEKHLANITKRGQVSQPKKEDK--GYSVGPILFGFFVFVLVGSALVQILQ 58
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Match: UPI00077A7D3F (stress-associated endoplasmic reticulum protein 2-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A7D3F)

HSP 1 Score: 56.6 bits (135), Expect = 2.430e-9
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   19 RLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSIFQVLK 177
            R+A+EKH QN+T RG+VPK  +  ++  Y VGP LL  FLFVV GS+IFQ+++
Sbjct:    8 RVANEKHSQNITTRGNVPKS-LRPQEEKYPVGPILLGLFLFVVCGSAIFQIIQ 59
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Match: A0A485KRK7_9STRA (Aste57867_10511 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRK7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.650e-9
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   13 KTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSIFQVLK 177
            K RL +EKHL N+T+RG VP       + GY VGP L+ F  F+V+GS+I +VL+
Sbjct:    9 KLRLRNEKHLNNITKRGKVPTSARVTHEEGYKVGPVLMGFLFFLVVGSAILEVLR 63
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1608.4160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G487_ECTSI4.640e-3298.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D0MTV7_PHYIT5.120e-1156.36Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
K3WKY6_GLOUD7.270e-1156.36Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A3M6VCY0_9STRA1.470e-1058.18Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A2D4BJU9_PYTIN3.640e-1054.72Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
T2M9E3_HYDVU6.110e-1058.49Stress-associated endoplasmic reticulum protein 2 ... [more]
A0A4D9DDX7_9STRA9.330e-1052.63Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0N7L5X2_PLAHL1.710e-954.72Stress-associated endoplasmic reticulum protein 2-... [more]
UPI00077A7D3F2.430e-954.72stress-associated endoplasmic reticulum protein 2-... [more]
A0A485KRK7_9STRA5.650e-949.09Aste57867_10511 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1608contigE-fasciculatus_F_contig1608:8794..10245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog115417.EPrPW00000018374
Preferred nameSERP1
GOsGO:0001501,GO:0002791,GO:0002793,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005840,GO:0005856,GO:0005874,GO:0005881,GO:0005975,GO:0005996,GO:0006006,GO:0006417,GO:0006464,GO:0006486,GO:0006807,GO:0006950,GO:0006986,GO:0007009,GO:0007154,GO:0007165,GO:0007275,GO:0007517,GO:0007568,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009791,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010256,GO:0010259,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010817,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0019222,GO:0019318,GO:0019538,GO:0023051,GO:0023052,GO:0023056,GO:0030968,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0032024,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034620,GO:0034645,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036498,GO:0040008,GO:0042175,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045927,GO:0046620,GO:0046622,GO:0046883,GO:0046887,GO:0048513,GO:0048518,GO:0048522,GO:0048638,GO:0048639,GO:0048644,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050796,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051716,GO:0060123,GO:0060124,GO:0060255,GO:0061024,GO:0061061,GO:0065007,GO:0065008,GO:0070085,GO:0070201,GO:0070887,GO:0071310,GO:0071704,GO:0071840,GO:0080090,GO:0090087,GO:0090276,GO:0090277,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951,GO:1990904,GO:2000112
EggNOG free text desc.Ribosome associated membrane protein RAMP4
EggNOG OGs1MJXN@121069,KOG3491@1,KOG3491@2759
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionStress-associated endoplasmic reticulum protein
Ec32 orthologEc-02_001730.1
Exons2
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928075.223002-CDS-E-fasciculatus_F_contig1608:8793..88591622928075.223002-CDS-E-fasciculatus_F_contig1608:8793..8859Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1608 8794..8859 +
1695995812.9884923-CDS-E-fasciculatus_F_contig1608:8793..88591695995812.9884923-CDS-E-fasciculatus_F_contig1608:8793..8859Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1608 8794..8859 +
1622928075.245035-CDS-E-fasciculatus_F_contig1608:10134..102451622928075.245035-CDS-E-fasciculatus_F_contig1608:10134..10245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1608 10135..10245 +
1695995813.0011737-CDS-E-fasciculatus_F_contig1608:10134..102451695995813.0011737-CDS-E-fasciculatus_F_contig1608:10134..10245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1608 10135..10245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1608.4160.1prot_E-fasciculatus_F_contig1608.4160.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1608 8794..10245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1608.4160.1

>prot_E-fasciculatus_F_contig1608.4160.1 ID=prot_E-fasciculatus_F_contig1608.4160.1|Name=mRNA_E-fasciculatus_F_contig1608.4160.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=59bp
MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVL
GSSIFQVLK
back to top

mRNA from alignment at E-fasciculatus_F_contig1608:8794..10245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1608.4160.1 ID=mRNA_E-fasciculatus_F_contig1608.4160.1|Name=mRNA_E-fasciculatus_F_contig1608.4160.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1452bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1608:8794..10245+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTTCTCGCAAAACCCGTTTGGCCAGCGAGAAGCACCTCCAGAATGT
CACACGGCGCGGCTCGGTGAGTTGCTGAAACGACGAGTGTTGTGTATAAT
CCACATCATCACACCGGGTTGCTGCTCAATTATGTTAGGCGAACAGCAAC
CGCACGCCGCCTACTGCTGTACTGACTGTAGTAGACCTTTGATCACTGCC
GCGTGGGTTGCGTGCTGCCGTCTACCGGCTGCCTTCTCTATCTGTTGGTG
CACCTGCAACAAGCCCGGTGCTGCTCAGGGGACGGGTCGGGGAAGAGATA
TTTGGTGCCTCTTTCTTCGGGCACGGCCAGCTCGTCCACGTGCTTGGTTG
TAGCTGGAGTGCTGTGCTCTCCGCTTCGCACACAGCTGCAAGGGTGCTTA
CAATGCCAACAACACCAATAGTGTACAGTAGTGTGGGTGTGCTTCGCTCT
TGCGCTGTAGGCGCCGTCCGTAGAGCTATCACGGGAGGTTCGACGGCGGG
GGGGAGGGGTTAGAGCGGTTGGCATTGCTTTCAAGACGTTCGGCGGCGGC
GAGACTAGTACTGCTGTATTGTACCGCTACTTGTACAGCAGCAGAGGCGA
TGAGGCGATGCGCGGTGTGAGGTGCACCCGGAACAATGCCAACAGCGCGG
CCCGCCTCTTCAGGCCTTACTAGACACTAGTGCACCACCGTTGGGACCAG
GAGCCATGCTGCTAACACTTTGGACGGTATACGGGGCTAACGGGTTTCTC
CGGGGTAGCGGGGTGGCGGTACGTGTCGATGTCTGGGACCACAAGCCGGA
GCACTCTGTAACCGCTCCTTCTTCTCGTTCAAACCAATCAGAGGGAGGCA
CGTACAATAGCCGGGGGCACGTTCTCTTGTTTGCAGCTACCTCGACGCCT
CGACGGGTTCAAGAACTCGACCATTGACTACGAGCCAGTGCTTTCGTCAC
TGCTCTCTGATACCCAGACTGGCATGCGTCTGATGCGTCGACCGTTTTGT
GTGTGCGCGTCTGCTGCTGTATCTTCACGAGCTTTACCAGACGGCCACAA
CAGCAGTAGCACCGTACGGAAGATCACCTATTATTCCTGGCACCGACACG
TAGCTGTAACAAAACTCGCTGAAATCGACGTGAGAGGGTCCGTTTTGGCA
GCGTGCTACACGTGGGCGTGAGAAAATGACACCGCGGATAATGACCATTT
GCGAGTGACAAGCTTTTTCGTTGCCTGCCGCCGCTTTCCACTGGTTGATT
CCGATGGGACTCGAAATGCGCAACCCTTCTAACCTTTTCCGGGCTGACTG
GGCGTCCCGCTTCGTTTCACTCGATGACCCGACGTCGGCAGGTACCGAAG
GGGAAGATCGAGAACAAGAAGACTGGCTACGCGGTAGGACCGTGCCTGCT
CTTCTTTTTCTTGTTCGTCGTGTTGGGGTCGAGCATTTTCCAGGTCTTGA
AG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1608:8794..10245+

>mRNA_E-fasciculatus_F_contig1608.4160.1 ID=mRNA_E-fasciculatus_F_contig1608.4160.1|Name=mRNA_E-fasciculatus_F_contig1608.4160.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1608:8794..10245+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTTCTCGCAAAACCCGTTTGGCCAGCGAGAAGCACCTCCAGAATGT
CACACGGCGCGGCTCGATGTCTTCTCGCAAAACCCGTTTGGCCAGCGAGA
AGCACCTCCAGAATGTCACACGGCGCGGCTCGGTACCGAAGGGGAAGATC
GAGAACAAGAAGACTGGCTACGCGGTAGGACCGTGCCTGCTCTTCTTTTT
CTTGTTCGTCGTGTTGGGGTCGAGCATTTTCCAGGTCTTGAAGGTACCGA
AGGGGAAGATCGAGAACAAGAAGACTGGCTACGCGGTAGGACCGTGCCTG
CTCTTCTTTTTCTTGTTCGTCGTGTTGGGGTCGAGCATTTTCCAGGTCTT
GAAG
back to top