mRNA_E-fasciculatus_F_contig16076.4156.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16076.4156.1
Unique NamemRNA_E-fasciculatus_F_contig16076.4156.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16076.4156.1 vs. uniprot
Match: D7FJN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN7_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.360e-65
Identity = 90/102 (88.24%), Postives = 97/102 (95.10%), Query Frame = 1 
Query:    1 QGVSIERWDCLQSSKGGKRGDSSGSSFDINPCFCPFGAYCKNLTSGEWADPSVCPQDGTALCWDVNRTPVDLYIKSTRDCTAAQGPSCTLDAPCTPCGLDTL 306
            +G SIERWDCLQS+KGGKR DSSGSSFDINPCFCPFGA+CKNLTSGEW DPSVCP+DGTALCWD+N TPV+LYIKSTRDCTAAQGPSC+L APCTPCGLDTL
Sbjct:   70 RGASIERWDCLQSTKGGKRADSSGSSFDINPCFCPFGAFCKNLTSGEWVDPSVCPKDGTALCWDINHTPVNLYIKSTRDCTAAQGPSCSLAAPCTPCGLDTL 171
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BLAST of mRNA_E-fasciculatus_F_contig16076.4156.1 vs. uniprot
Match: A0A7S1U4E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4E8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.130e-11
Identity = 45/105 (42.86%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:    4 GVSIERWDCLQSSKGGKRGDSSGSSFDINPCFCPFGAY-CKNLTSGEWA--DPSVCPQDGTALCWDVNRTPVDLYI-KSTRDCTAAQGPSCTLDAPCTPCGLDTL 306
            G  I R+DC  SSKGGK G   G     N C+C    + C    SG     DP+ CP+D TA C D N       + +  RDC  AQ PSCT++ PCTPC   TL
Sbjct:   96 GTDILRYDCQDSSKGGKYG-RDGDEKVPNECWCLGTNWTCTYSASGVVVQNDPA-CPRDNTAACRDANGVNQKQSLSRFKRDCRNAQPPSCTMEHPCTPCERSTL 198
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BLAST of mRNA_E-fasciculatus_F_contig16076.4156.1 vs. uniprot
Match: A0A7S2CU36_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CU36_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.310e-6
Identity = 40/129 (31.01%), Postives = 49/129 (37.98%), Query Frame = 1 
Query:    4 GVSIERWDCLQSSKGGKRGDS---SGSSFDINPCFCPFGAYCK---NLTSGEWADPSVCPQDGTALCWD-----------------VNRTPVDLYIKST-------RDCTAAQGPSCTLDAPCTPCGLD 300
            GV   RWDCLQS+KGGK   +    GS   +NPC+C   A CK    +     + P  CP      C +                      V  YI          RDC   Q   CT   PC+PC L+
Sbjct:  184 GVEAYRWDCLQSTKGGKISRAMFYEGSERALNPCYCHANATCKYKSGVKEYNGSHPLGCPLTDEFTCLEQYAFQAFKTETXXXXXXXXXXKVWPYIAREALDEGFRRDCKKGQAARCTRQDPCSPCELE 312
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16076.4156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJN7_ECTSI1.360e-6588.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1U4E8_9STRA7.130e-1142.86Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2CU36_9STRA8.310e-631.01Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16076contigE-fasciculatus_F_contig16076:91..2812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size309
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16076.4156.1prot_E-fasciculatus_F_contig16076.4156.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16076 91..1919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928074.7157857-CDS-E-fasciculatus_F_contig16076:90..1911622928074.7157857-CDS-E-fasciculatus_F_contig16076:90..191Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16076 91..191 -
1695995812.7547987-CDS-E-fasciculatus_F_contig16076:90..1911695995812.7547987-CDS-E-fasciculatus_F_contig16076:90..191Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16076 91..191 -
1622928074.7328143-CDS-E-fasciculatus_F_contig16076:1852..19191622928074.7328143-CDS-E-fasciculatus_F_contig16076:1852..1919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16076 1853..1919 -
1695995812.7644196-CDS-E-fasciculatus_F_contig16076:1852..19191695995812.7644196-CDS-E-fasciculatus_F_contig16076:1852..1919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16076 1853..1919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928074.7495043-UTR-E-fasciculatus_F_contig16076:1919..19231622928074.7495043-UTR-E-fasciculatus_F_contig16076:1919..1923Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16076 1920..1923 -
1695995812.7751389-UTR-E-fasciculatus_F_contig16076:1919..19231695995812.7751389-UTR-E-fasciculatus_F_contig16076:1919..1923Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16076 1920..1923 -
1622928074.766989-UTR-E-fasciculatus_F_contig16076:2676..28121622928074.766989-UTR-E-fasciculatus_F_contig16076:2676..2812Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16076 2677..2812 -
1695995812.785947-UTR-E-fasciculatus_F_contig16076:2676..28121695995812.785947-UTR-E-fasciculatus_F_contig16076:2676..2812Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16076 2677..2812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16076.4156.1

>prot_E-fasciculatus_F_contig16076.4156.1 ID=prot_E-fasciculatus_F_contig16076.4156.1|Name=mRNA_E-fasciculatus_F_contig16076.4156.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=56bp
MGRPVGVPSGWDGSMLGCQPYTGGLVHKKHAGLHRRSGAELHLGRAMHPL
RSGHLR
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mRNA from alignment at E-fasciculatus_F_contig16076:91..2812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16076.4156.1 ID=mRNA_E-fasciculatus_F_contig16076.4156.1|Name=mRNA_E-fasciculatus_F_contig16076.4156.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2722bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16076:91..2812- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGAGTGTCGATCGAGAGATGGGACTGCCTGCAGAGCAGCAAGGGAGG
GAAGAGGGGAGACAGCTCCGGCAGCTCGTTTGATATCAACCCGTGCTTCT
GCCCCTTCGGCGCCTACTGCAAAAACTTGACCTCAGGTGGGAGTGGGAGA
TCTTTTACTGTCGCGCCCATCTATTCTGTAGTGGCCCCTGTTTTAGTGCC
GGCATGTGCCACTACAGAAAAGTCACCCGCACCAAGAAAAATTAAGATTT
ACTTGAAAATTGAGTGTCAAGACCGGCACTACTTGTAGACGGGGACTCTC
CTGCACCGTATGCATACAATAGCTTGTATGACACAAGATACCACGCCCCC
TGGACCGGTTCCAAAGCTGTTATTTAGTAGATTGCTCTACAGCTACAGCA
GTTGTGGTGGTTCCGAAAACGGTTCCGAAAACGGCGGTGTTGGAACCTTG
TCGCTTGACGAAGACGAACACGTACGTACCGTACCATTTGAGTCTCCTTC
GTCGTGGAGGAGCCGGGCTTTATAATCGATGTTCAGGGGGGGGGGGTAGC
TTATGCGACCTGCGGAACATGAGTCTTGTGGATAAGTCTGCAAACTGTTA
CTACTAGGATTAGAGTGACGCATTTAATGGGTAGTACGGTATACTTCACA
CCAGTAAACCACGAACCCCGCGTGATTATGTATGTTCTGACGTTCGATAC
TTCAGTATCTTCCTCTGTCACATCCGCAACCTTATTTCTCTAACAACGCC
CTCATTCCCCCCAACAGGGTATGTACGTATGCTGTATGCCACATGTCACT
AGGAAGACCCCCCATCACACCACACGCAAGAACATCTCACCTCAAGCCCA
GTATATACCGCACCATCAATTCCACCCGTTCCATTCCAGGTGAATGGGCC
GACCCGTCGGTGTGCCCTCAGGATGGGACGGCTCTATGCTGGGATGTCAA
CCGTACACCGGTCAGTGTTGAAAAAGAGGCTCCTCTTGAGTTGTTCTGCA
ACAAGGAGCGCAGTAAGTATCGTCGAAGTACCTCCAACAGTGCAGCTTGC
TTAAGAAATTGACAGTAAACACAAGTGAGCCTGTACAATAATAATTGAGT
ACGAAATAATGACCGTAACAACAGGCGCTGAACCAATAATCAATTTATAA
CCCACACTAAAAGCTTCATAGTCAGTCGATGCTGGGATAGATATCCCACA
CAGAGAGAAACAAGACACGGAACGCTCTCGGAAAAAGTAAGAGTAAGAGG
TTCTCAACCCCAACCCTTTGGTTCTCAACCTCAACCCTTTGGTTCTCAAC
CTAAACCCTTTGGTTCTCAACCTCAACCCTTTGGTTCTCAACCTCAACCC
TTAGGTTCTCAACCTCAACCCTTTGGTTCTCAACCGCAACCCTTAGGTAA
AGCACAAGGGCCTTTTCTGCGGGCAAGCTTGTTGATTTGTTTCCGTTGAT
GGTGGTGACCCCGTTTAGTTTCTAGTTTCTAGGTATGTAACCTATATTCA
ATCAAAGAGAGACTACCCTTCCGAGCTGCTTCCGAGGTACCGTAATACCA
CAGCAGTCAAAGGGGATGTCCACCTACCGTATGGTCCGACCCTACATTGA
CGCAAGGGAGCGCTACGATCCGGGGGTCATGCGGACGGGATTTCATTTGA
CGCCGTGCTACCTTCCTTCGTTCTTTGTTCTTTGCACGAGAGATGAATGG
TTGTTGGGCAGTCCCCGCGATGTGTACTCAAATGACCAGAAGTGTTTTCA
GGCAAATATGACCAAACACGTTTCTCAGCAGCCCCCGATAGCGTGTTGTC
AAGAAAGCTTTTCAGGCAAATTCGACCCAATGCGCATCTCGACATATGAC
TTATAGAATTCTCAACCCATGTACAGCCTCCAGGGGGTGTTATTTGTTTT
TGGTATGTGTTTTCATATGGGCCGATTTCTGTGTGAAGTGTGCCCTGCCA
CGCGCACGCCGCACCGCGCCATGCCAAACTATGTCAAGTGCCATTTTGCC
TTGTGTGCTTTGTTTTGTATCGTCAACACATACATGTTGAGTTGTTGATC
GGTATTGTAACGTCGACAAAGTGGCCCGTGTATCCTTGTTGTCGTTGTTG
TTGTTGTTGCTGCCGCTGTACTGGGACCAATTTTGTCTTCGCACTGAAGA
GTGAACAGAGTTTCGCCCGTTCGTCTGCGAAAACTTCTTGTTCCTCGCCT
GTCCTGCTCGTCACGCTATAGAAAAGAAGCCCCATTCGGTGCCGACGAAC
CTATTAATAGCCTAGTCTAGTCGAATCGCGTCCCGACGACGACAATCAGT
CGGATTAACTACTGTAATGCTCGCTGCCACGTGCAAACACAACTAACTAT
GGACCCGGAATGGGTGATGGAGCCGGAATAAAATGTCATGTAACACTGAC
TGTTGTAGCGGCTACGATTTTTTCGTCTCTTTTATATCCGGTTATCTCTT
CAAAAAATCTCTCTTGAACCGTAGCCTATACTGCTGTACATCAGAAGCGT
AAACTAGCAGTGTTTCGATTTGTTTGGATGTGGAGAAACTATTTTCACCA
CAACGTCAAAGTGACACAAATGTGTTCCCCTTATCTCGTGTGTGCGTCCC
TGGCGTTCGCCCGAACTTTAGGTGGACTTGTACATAAAAAGCACGCGGGA
TTGCACCGCCGCTCAGGGGCCGAGCTGCACCTTGGACGCGCCATGCACCC
CCTGCGGTCTGGACACCTTAGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16076:91..2812-

>mRNA_E-fasciculatus_F_contig16076.4156.1 ID=mRNA_E-fasciculatus_F_contig16076.4156.1|Name=mRNA_E-fasciculatus_F_contig16076.4156.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=336bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16076:91..2812- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCCGACCCGTCGGTGTGCCCTCAGGATGGGACGGCTCTATGCTGGG
ATGTCAACCGTACACCGATGGGCCGACCCGTCGGTGTGCCCTCAGGATGG
GACGGCTCTATGCTGGGATGTCAACCGTACACCGGTGGACTTGTACATAA
AAAGCACGCGGGATTGCACCGCCGCTCAGGGGCCGAGCTGCACCTTGGAC
GCGCCATGCACCCCCTGCGGTCTGGACACCTTAGAGTGGACTTGTACATA
AAAAGCACGCGGGATTGCACCGCCGCTCAGGGGCCGAGCTGCACCTTGGA
CGCGCCATGCACCCCCTGCGGTCTGGACACCTTAGA
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