mRNA_E-fasciculatus_F_contig16070.4153.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16070.4153.1
Unique NamemRNA_E-fasciculatus_F_contig16070.4153.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig16070.4153.1 vs. uniprot
Match: A0A6H5KIH1_9PHAE (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIH1_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 6.120e-88
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1
Query:    1 LSEVVLKFTTVADGNEASSFTVKRGGATVGRGSCNDICIPNDSCMGESEHASIVWREGAFHVEDRGLPYGASVRIGTGRGVRDWPLDQGAMFSAGNSVFHTTEIDEDKGMLLEIVAGPLKGQKRRVQKDGANIGRATESTIRY 429
            LSEV+LKFTTVADGNEASSFTVKR GATVGRGSCNDICIPNDSCMGESEHASIVWREGAFHVEDRGLPYGASVRIGTGRGVRDWPLDQGAMFSAGNSVFHTTEIDEDKGMLLEIVAGPLKGQKRRVQKDGANIGRATESTIR+
Sbjct:  324 LSEVILKFTTVADGNEASSFTVKREGATVGRGSCNDICIPNDSCMGESEHASIVWREGAFHVEDRGLPYGASVRIGTGRGVRDWPLDQGAMFSAGNSVFHTTEIDEDKGMLLEIVAGPLKGQKRRVQKDGANIGRATESTIRH 466          
BLAST of mRNA_E-fasciculatus_F_contig16070.4153.1 vs. uniprot
Match: A0A7S0XEJ1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEJ1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 8.270e-34
Identity = 71/143 (49.65%), Postives = 100/143 (69.93%), Query Frame = 1
Query:    1 LSEVVLKFTTVADG-NEASSFTVKRGGATVGRGSCNDICIPNDSCMGESEHASIVWREGAFHVEDRGLPYGASVRIGTGRGVR-DWPLDQGAMFSAGNSVFHTTEIDEDKGMLLEIVAGPLKGQKRRVQKDGANIGRATESTI 423
            L+++VLKFTTV++  NEA SFTV   GA +G GS N+I IP+D  + +  HA+I + +G+F++ D G    AS+RIG G G R  W L+  A FSAGNSVF +  IDED  ++L+++ GPLK +KR V K GA+ GR++E+TI
Sbjct:   90 LNKIVLKFTTVSESCNEAPSFTVSTKGANIGSGSTNEIYIPSDLRLNKDAHATINYSKGSFYICDNGYDNPASIRIGVGTGHRMTWYLENNARFSAGNSVFCSEGIDEDGNLVLKVLEGPLKNEKRVVTKRGASFGRSSENTI 232          
BLAST of mRNA_E-fasciculatus_F_contig16070.4153.1 vs. uniprot
Match: A0A7R9U1S5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1S5_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.310e-32
Identity = 56/118 (47.46%), Postives = 85/118 (72.03%), Query Frame = 1
Query:   76 GATVGRGSCNDICIPNDSCMGESEHASIVWREG--AFHVEDRGLPYGASVRIGTGRGVRDWPLDQGAMFSAGNSVFHTTEIDEDKGMLLEIVAGPLKGQKRRVQKDGANIGRATESTI 423
            GA++GRG  N++ +P D+ +   +HA IV++    AF+++D GL +GA+VRI  G G+R W L + A+FSAGNS F   E D D G+L+E+ AGPLKG++RRV + GA++GRAT++ +
Sbjct:    2 GASIGRGPANEVAVPTDTTLEADKHAMIVYKHDRKAFYLKDMGLEHGAAVRIEAGTGLRQWRLSENALFSAGNSSFKVVESD-DTGVLIEVGAGPLKGERRRVTQKGASLGRATDNVL 118          
BLAST of mRNA_E-fasciculatus_F_contig16070.4153.1 vs. uniprot
Match: A0A7S1UBQ7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBQ7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.880e-31
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    1 LSEVVLKFTTVADGNEASSFTVKRGGATVGRGSCNDICIPNDSCMGESEHASIVWREG--AFHVEDRGLPYGASVRIGTGRGVRDWPLDQGAMFSAGNSVFHTTEIDEDKGMLLEIVAGPLKGQKRRVQKDGANIGR 405
            L E+VLKFTT+++GNEA +F V  GGA++GR   N++ +P D+ +    HA I +R    AF++ D G  +GA++RI  G G+R W L + A+FSAGNS F     D    +LLE+ +GPLKG++RRV + GA +GR
Sbjct:  168 LEEIVLKFTTLSEGNEAPAFLVGMGGASIGRDPTNEVSVPTDATLEPERHAVIEYRADRQAFYLRDMGHDHGAAIRIEAGSGLRQWRLQENAVFSAGNSSFKVVTCDASS-VLLEVGSGPLKGERRRVGEKGATLGR 303          
BLAST of mRNA_E-fasciculatus_F_contig16070.4153.1 vs. uniprot
Match: A0A7S1XX31_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX31_9STRA)

HSP 1 Score: 125 bits (315), Expect = 9.230e-31
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    1 LSEVVLKFTTVADGNEASSFTVKRGGATVGRGSCNDICIPNDSCMGESEHASIVWREG--AFHVEDRGLPYGASVRIGTGRGVRDWPLDQGAMFSAGNSVFHTTEIDEDKGMLLEIVAGPLKGQKRRVQKDGANIGR 405
            L E+VLKFTT+++GNEA +F V  GGA++GR   N++ +P D+ +    HA I +R    AF++ D G  +GA++RI  G G+R W L + A+FSAGNS F     D    +LLE+ +GPLKG++RRV + GA +GR
Sbjct:  168 LEEIVLKFTTLSEGNEAPAFLVGMGGASIGRDPTNEVSVPTDATLEPERHAVIEYRADRQAFYLRDMGHDHGAAIRIEAGSGLRQWRLQENAVFSAGNSSFKVVTCDASS-VLLEVGSGPLKGERRRVGEKGATLGR 303          
BLAST of mRNA_E-fasciculatus_F_contig16070.4153.1 vs. uniprot
Match: A0A7S2FV88_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV88_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.730e-31
Identity = 58/143 (40.56%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    1 LSEVVLKFTTVADGNEASSFTVKRGGATVGRGSCNDICIPNDSCMGESEHASIVWREGAFHVEDRGLPYGASVRIGTGRGVRDWPLDQGAMFSAGNSVFHTTEID--EDKGMLLEIVAGPLKGQKRRVQKDGANIGRATESTI 423
            +  +VLKFTT++DGNE +SF +   G T+GRG  N +C+P+D+ + +  HA + +  G F + D    Y A+VR+G GR  + WPL + A FS+GNS+F   +++      + L +  GP KG+   V KDGA +GRAT++T+
Sbjct:    1 VDRLVLKFTTLSDGNEKASFCLDARGGTIGRGLENHVCVPSDTTLAKLRHACVEYSNGEFQLVDTSSDYHAAVRVGVGRAAQAWPLTKTAAFSSGNSIFEVVDVELHPTPAVSLAVRTGPRKGETLVVGKDGATLGRATDNTV 143          
BLAST of mRNA_E-fasciculatus_F_contig16070.4153.1 vs. uniprot
Match: A0A7S3YCX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCX7_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 2.740e-16
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  169 EGAFHVEDRGLPYGASVRIGTGRGVRDWPLDQGAMFSAGNSVF--HTTEIDEDKGML-LEIVAGPLKGQKRRVQKDGANIGRATESTI 423
            E  FH+ D G P GA+V+IG G   R+WPL   + FSAGNSV    + +++ D+ M+ L I  GPLKG++R++ K+GA +GRATE+ +
Sbjct:    3 EPGFHLHDLGQPLGAAVQIGKGIEDREWPLIVNSAFSAGNSVLVVESADLNGDEPMIWLRIEEGPLKGERRKITKEGAALGRATENAL 90          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16070.4153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KIH1_9PHAE6.120e-8897.90PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S0XEJ1_9STRA8.270e-3449.65Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7R9U1S5_9STRA4.310e-3247.46Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1UBQ7_9STRA2.880e-3145.99Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XX31_9STRA9.230e-3145.99Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2FV88_9STRA9.730e-3140.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3YCX7_HETAK2.740e-1646.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16070contigE-fasciculatus_F_contig16070:1829..2584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score281.2
Seed ortholog evalue2.7e-73
Seed eggNOG ortholog2880.D7G1B3
KEGG koko:K01090
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928074.5706885-CDS-E-fasciculatus_F_contig16070:1828..21331622928074.5706885-CDS-E-fasciculatus_F_contig16070:1828..2133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16070 1829..2133 +
1695995812.693071-CDS-E-fasciculatus_F_contig16070:1828..21331695995812.693071-CDS-E-fasciculatus_F_contig16070:1828..2133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16070 1829..2133 +
1622928074.5829644-CDS-E-fasciculatus_F_contig16070:2457..25841622928074.5829644-CDS-E-fasciculatus_F_contig16070:2457..2584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16070 2458..2584 +
1695995812.708592-CDS-E-fasciculatus_F_contig16070:2457..25841695995812.708592-CDS-E-fasciculatus_F_contig16070:2457..2584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16070 2458..2584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16070.4153.1prot_E-fasciculatus_F_contig16070.4153.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16070 1829..2584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16070.4153.1

>prot_E-fasciculatus_F_contig16070.4153.1 ID=prot_E-fasciculatus_F_contig16070.4153.1|Name=mRNA_E-fasciculatus_F_contig16070.4153.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=144bp
LSEVVLKFTTVADGNEASSFTVKRGGATVGRGSCNDICIPNDSCMGESEH
ASIVWREGAFHVEDRGLPYGASVRIGTGRGVRDWPLDQGAMFSAGNSVFH
TTEIDEDKGMLLEIVAGPLKGQKRRVQKDGANIGRATESTIRYA
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mRNA from alignment at E-fasciculatus_F_contig16070:1829..2584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16070.4153.1 ID=mRNA_E-fasciculatus_F_contig16070.4153.1|Name=mRNA_E-fasciculatus_F_contig16070.4153.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=756bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16070:1829..2584+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTCCGAAGTTGTCCTCAAGTTCACGACGGTGGCCGACGGCAACGAAGC GTCTAGCTTCACGGTGAAGAGGGGAGGGGCGACCGTGGGGCGTGGGTCCT GCAACGACATCTGCATCCCGAACGACTCGTGCATGGGCGAGTCGGAGCAC GCGAGCATCGTGTGGCGGGAGGGGGCGTTCCACGTGGAGGATAGGGGACT CCCGTACGGGGCGTCTGTGCGGATCGGGACGGGGAGGGGGGTACGCGACT GGCCACTCGATCAGGGGGCTATGTTCTCGGCGGGCAACAGCGTTTTCCAT ACCACGTGAGACGTGTTGGGTTTGTGGTGGTACAGTCGTTTCGTCTTGCG CGTGATATCTCTTATGTACCAAGGGTTAGAGAGTTTGTCTGTTATTGTTG CGGGCATAGCACAGCAGAAAGGTGCGAATGCGTACCATTTGAGTTCGGTC ATATCTTCGTCATGGAGCAAGTAGTCGAGCTTTGAACATCGGTGTAGGGT GTGGTATCTTGGTGCAACTTGCGGTGCTAGAAAATCTCCCTGGGTATGTA CGTATGTACAGAGTAGGTGTGTCCAAGTGTTTGCTGCATGTTCCTGATCG CTCTCCCACCGTTGTCCCAAATGTTGCAGGGAGATCGACGAGGACAAGGG CATGCTGCTGGAGATAGTTGCCGGTCCCCTGAAGGGACAAAAGCGGCGAG TTCAGAAGGATGGTGCCAACATCGGCCGCGCCACAGAAAGCACCATCAGG TATGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16070:1829..2584+

>mRNA_E-fasciculatus_F_contig16070.4153.1 ID=mRNA_E-fasciculatus_F_contig16070.4153.1|Name=mRNA_E-fasciculatus_F_contig16070.4153.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16070:1829..2584+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTCCGAAGTTGTCCTCAAGTTCACGACGGTGGCCGACGGCAACGAAGC
GTCTAGCTTCACGGTGAAGAGGGGAGGGGCGACCGTGGGGCGTGGGTCCT
GCAACGACATCTGCATCCCGAACGACTCGTGCATGGGCGAGTCGGAGCAC
GCGAGCATCGTGTGGCGGGAGGGGGCGTTCCACGTGGAGGATAGGGGACT
CCCGTACGGGGCGTCTGTGCGGATCGGGACGGGGAGGGGGGTACGCGACT
GGCCACTCGATCAGGGGGCTATGTTCTCGGCGGGCAACAGCGTTTTCCAT
ACCACCTCTCCGAAGTTGTCCTCAAGTTCACGACGGTGGCCGACGGCAAC
GAAGCGTCTAGCTTCACGGTGAAGAGGGGAGGGGCGACCGTGGGGCGTGG
GTCCTGCAACGACATCTGCATCCCGAACGACTCGTGCATGGGCGAGTCGG
AGCACGCGAGCATCGTGTGGCGGGAGGGGGCGTTCCACGTGGAGGATAGG
GGACTCCCGTACGGGGCGTCTGTGCGGATCGGGACGGGGAGGGGGGTACG
CGACTGGCCACTCGATCAGGGGGCTATGTTCTCGGCGGGCAACAGCGTTT
TCCATACCACGGAGATCGACGAGGACAAGGGCATGCTGCTGGAGATAGTT
GCCGGTCCCCTGAAGGGACAAAAGCGGCGAGTTCAGAAGGATGGTGCCAA
CATCGGCCGCGCCACAGAAAGCACCATCAGGTATGCAGGAGATCGACGAG
GACAAGGGCATGCTGCTGGAGATAGTTGCCGGTCCCCTGAAGGGACAAAA
GCGGCGAGTTCAGAAGGATGGTGCCAACATCGGCCGCGCCACAGAAAGCA
CCATCAGGTATGCA
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